RNA–Protein interactions for RNA: ENST00000580419.5

SMARCE1-216, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 1 (best) BASIC

Gene SMARCE1, Length 1,228 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-216ENST00000580419 NCBP3Q53F19 620 aaKnown RBP18.92■□□□□ 0.62
SMARCE1-216ENST00000580419 SUSD4Q5VX71 490 aa18.92■□□□□ 0.62
SMARCE1-216ENST00000580419 CHMP4AQ9BY43 222 aa18.92■□□□□ 0.62
SMARCE1-216ENST00000580419 ZBTB3Q9H5J0 574 aa18.92■□□□□ 0.62
SMARCE1-216ENST00000580419 ZNF853P0CG23 659 aa18.91■□□□□ 0.62
SMARCE1-216ENST00000580419 NGEFQ8N5V2 710 aa18.91■□□□□ 0.62
SMARCE1-216ENST00000580419 VPS33BQ9H267 617 aa18.91■□□□□ 0.62
SMARCE1-216ENST00000580419 PCNTO95613 3336 aa18.9■□□□□ 0.62
SMARCE1-216ENST00000580419 IQCA1LA6NCM1 817 aa18.9■□□□□ 0.62
SMARCE1-216ENST00000580419 EIF2S2P20042 333 aaKnown RBP18.9■□□□□ 0.62
SMARCE1-216ENST00000580419 CCDC146Q8IYE0 955 aa18.9■□□□□ 0.62
SMARCE1-216ENST00000580419 UTP14AQ9BVJ6 771 aaKnown RBP18.9■□□□□ 0.62
SMARCE1-216ENST00000580419 DBF4Q9UBU7 674 aaPredicted RBP18.9■□□□□ 0.62
SMARCE1-216ENST00000580419 TCIRG1Q13488 830 aa18.89■□□□□ 0.61
SMARCE1-216ENST00000580419 NUTM1Q86Y26 1132 aa18.89■□□□□ 0.61
SMARCE1-216ENST00000580419 RPGRQ92834 1020 aaKnown RBP18.89■□□□□ 0.61
SMARCE1-216ENST00000580419 RBM17Q96I25 401 aaKnown RBP18.89■□□□□ 0.61
SMARCE1-216ENST00000580419 NLRP3Q96P20 1036 aa18.89■□□□□ 0.61
SMARCE1-216ENST00000580419 IFT57Q9NWB7 429 aa18.89■□□□□ 0.61
SMARCE1-216ENST00000580419 GPTP24298 496 aa18.88■□□□□ 0.61
SMARCE1-216ENST00000580419 PROSER3Q2NL68 480 aa18.88■□□□□ 0.61
SMARCE1-216ENST00000580419 COPS6Q7L5N1 327 aa18.88■□□□□ 0.61
SMARCE1-216ENST00000580419 HYPKQ9NX55 129 aa18.88■□□□□ 0.61
SMARCE1-216ENST00000580419 ZNF219Q9P2Y4 722 aaPredicted RBP18.88■□□□□ 0.61
SMARCE1-216ENST00000580419 FAM177BA6PVY3 158 aa18.87■□□□□ 0.61
SMARCE1-216ENST00000580419 FZD9O00144 591 aa18.87■□□□□ 0.61
SMARCE1-216ENST00000580419 IARSP41252 1262 aaKnown RBP18.87■□□□□ 0.61
SMARCE1-216ENST00000580419 TRIM28Q13263 835 aaKnown RBP18.87■□□□□ 0.61
SMARCE1-216ENST00000580419 NEUROD2Q15784 382 aa18.87■□□□□ 0.61
SMARCE1-216ENST00000580419 JMYQ8N9B5 988 aa18.87■□□□□ 0.61
SMARCE1-216ENST00000580419 PLBD2Q8NHP8 589 aa18.87■□□□□ 0.61
SMARCE1-216ENST00000580419 GNAI1P63096 354 aa18.86■□□□□ 0.61
SMARCE1-216ENST00000580419 HDGFL1Q5TGJ6 251 aa18.86■□□□□ 0.61
SMARCE1-216ENST00000580419 NLRP10Q86W26 655 aa18.86■□□□□ 0.61
SMARCE1-216ENST00000580419 XAGE3Q8WTP9 111 aa18.86■□□□□ 0.61
SMARCE1-216ENST00000580419 BBOX1O75936 387 aa18.85■□□□□ 0.61
SMARCE1-216ENST00000580419 TMC4Q7Z404 712 aa18.85■□□□□ 0.61
SMARCE1-216ENST00000580419 SYNE4Q8N205 404 aa18.85■□□□□ 0.61
SMARCE1-216ENST00000580419 KLRG1Q96E93 195 aa18.85■□□□□ 0.61
SMARCE1-216ENST00000580419 LAMB2P55268 1798 aa18.84■□□□□ 0.61
SMARCE1-216ENST00000580419 SH3TC1Q8TE82 1336 aa18.84■□□□□ 0.61
SMARCE1-216ENST00000580419 DDNO94850 711 aaPredicted RBP18.84■□□□□ 0.61
SMARCE1-216ENST00000580419 CCDC27Q2M243 656 aa18.84■□□□□ 0.61
SMARCE1-216ENST00000580419 ANKRD13DQ6ZTN6 518 aa18.84■□□□□ 0.61
SMARCE1-216ENST00000580419 GPC2Q8N158 579 aa18.84■□□□□ 0.61
SMARCE1-216ENST00000580419 ZNF277Q9NRM2 450 aaPredicted RBP18.84■□□□□ 0.61
SMARCE1-216ENST00000580419 CHPF2Q9P2E5 772 aa18.84■□□□□ 0.61
SMARCE1-216ENST00000580419 ATP6V0A2Q9Y487 856 aa18.84■□□□□ 0.61
SMARCE1-216ENST00000580419 APAF1O14727 1248 aa18.83■□□□□ 0.6
SMARCE1-216ENST00000580419 CHADLQ6NUI6 762 aa18.83■□□□□ 0.6
SMARCE1-216ENST00000580419 JDP2Q8WYK2 163 aa18.83■□□□□ 0.6
SMARCE1-216ENST00000580419 RTFDC1Q9BY42 306 aaPredicted RBP18.83■□□□□ 0.6
SMARCE1-216ENST00000580419 TMX4Q9H1E5 349 aaPredicted RBP18.83■□□□□ 0.6
SMARCE1-216ENST00000580419 MBIPQ9NS73 344 aa18.83■□□□□ 0.6
SMARCE1-216ENST00000580419 PPEF1O14829 653 aaPredicted RBP18.82■□□□□ 0.6
SMARCE1-216ENST00000580419 DUSP27Q5VZP5 1158 aa18.82■□□□□ 0.6
SMARCE1-216ENST00000580419 LDHDQ86WU2 507 aa18.82■□□□□ 0.6
SMARCE1-216ENST00000580419 ISCA1Q9BUE6 129 aa18.82■□□□□ 0.6
SMARCE1-216ENST00000580419 ANXA1P04083 346 aa18.81■□□□□ 0.6
SMARCE1-216ENST00000580419 KRT24Q2M2I5 525 aa18.81■□□□□ 0.6
SMARCE1-216ENST00000580419 PNMA8AQ86V59 439 aaPredicted RBP18.81■□□□□ 0.6
SMARCE1-216ENST00000580419 SUPT20HQ8NEM7 779 aa18.81■□□□□ 0.6
SMARCE1-216ENST00000580419 TAF1DQ9H5J8 278 aaPredicted RBP18.81■□□□□ 0.6
SMARCE1-216ENST00000580419 LAS1LQ9Y4W2 734 aaKnown RBP18.81■□□□□ 0.6
SMARCE1-216ENST00000580419 CACNA1FO60840 1977 aa18.81■□□□□ 0.6
SMARCE1-216ENST00000580419 ADAMTSL1Q8N6G6 1762 aa18.81■□□□□ 0.6
SMARCE1-216ENST00000580419 HSP90B1P14625 803 aaKnown RBP18.8■□□□□ 0.6
SMARCE1-216ENST00000580419 OLFM4Q6UX06 510 aa18.8■□□□□ 0.6
SMARCE1-216ENST00000580419 SP8Q8IXZ3 490 aa18.8■□□□□ 0.6
SMARCE1-216ENST00000580419 TRMT112Q9UI30 125 aaKnown RBP18.8■□□□□ 0.6
SMARCE1-216ENST00000580419 AIMP1Q12904 312 aaKnown RBP18.79■□□□□ 0.6
SMARCE1-216ENST00000580419 SF3B3Q15393 1217 aaKnown RBP18.79■□□□□ 0.6
SMARCE1-216ENST00000580419 C3orf67Q6ZVT6 689 aa18.79■□□□□ 0.6
SMARCE1-216ENST00000580419 HACL1Q9UJ83 578 aa18.79■□□□□ 0.6
SMARCE1-216ENST00000580419 ABCC4O15439 1325 aa18.78■□□□□ 0.6
SMARCE1-216ENST00000580419 ZNF541Q9H0D2 1346 aa18.78■□□□□ 0.6
SMARCE1-216ENST00000580419 LRRC37AA6NMS7 1700 aa18.78■□□□□ 0.6
SMARCE1-216ENST00000580419 DDX60Q8IY21 1712 aaKnown RBP18.78■□□□□ 0.6
SMARCE1-216ENST00000580419 CREBZFQ9NS37 354 aa18.78■□□□□ 0.6
SMARCE1-216ENST00000580419 IL16Q14005 1332 aa18.77■□□□□ 0.6
SMARCE1-216ENST00000580419 EIF6P56537 245 aaKnown RBP18.77■□□□□ 0.6
SMARCE1-216ENST00000580419 GRAPQ13588 217 aa18.77■□□□□ 0.6
SMARCE1-216ENST00000580419 DDX46Q7L014 1031 aaKnown RBP18.77■□□□□ 0.6
SMARCE1-216ENST00000580419 GRAPLQ8TC17 118 aaPredicted RBP18.77■□□□□ 0.6
SMARCE1-216ENST00000580419 NECTIN2Q92692 538 aa18.77■□□□□ 0.6
SMARCE1-216ENST00000580419 PASKQ96RG2 1323 aa18.76■□□□□ 0.59
SMARCE1-216ENST00000580419 LARGE2Q8N3Y3 721 aa18.76■□□□□ 0.59
SMARCE1-216ENST00000580419 COL4A5P29400 1685 aa18.76■□□□□ 0.59
SMARCE1-216ENST00000580419 CDHR2Q9BYE9 1310 aa18.75■□□□□ 0.59
SMARCE1-216ENST00000580419 EPHX2P34913 555 aa18.75■□□□□ 0.59
SMARCE1-216ENST00000580419 CCDC30Q5VVM6 783 aa18.75■□□□□ 0.59
SMARCE1-216ENST00000580419 HCLS1P14317 486 aaPredicted RBP18.74■□□□□ 0.59
SMARCE1-216ENST00000580419 GOLGA2Q08379 1002 aa18.74■□□□□ 0.59
SMARCE1-216ENST00000580419 IFFO2Q5TF58 517 aa18.74■□□□□ 0.59
SMARCE1-216ENST00000580419 CCDC191Q8NCU4 936 aa18.74■□□□□ 0.59
SMARCE1-216ENST00000580419 ITGBL1O95965 494 aaPredicted RBP18.73■□□□□ 0.59
SMARCE1-216ENST00000580419 KIAA2012Q0VF49 1180 aa18.73■□□□□ 0.59
SMARCE1-216ENST00000580419 NIM1KQ8IY84 436 aa18.73■□□□□ 0.59
SMARCE1-216ENST00000580419 ZBTB38Q8NAP3 1195 aaPredicted RBP18.73■□□□□ 0.59
SMARCE1-216ENST00000580419 ZNRF3Q9ULT6 936 aa18.73■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms