RNA–Protein interactions for RNA: ENST00000580095.5

TOP3A-209, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 1 (best)

Gene TOP3A, Length 2,929 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-209ENST00000580095 RBM8AQ9Y5S9 174 aaKnown RBP12.61□□□□□ -0.39
TOP3A-209ENST00000580095 PHKG2P15735 406 aa12.6□□□□□ -0.39
TOP3A-209ENST00000580095 WDR33Q9C0J8 1336 aaKnown RBP12.6□□□□□ -0.39
TOP3A-209ENST00000580095 HEG1Q9ULI3 1381 aa12.6□□□□□ -0.39
TOP3A-209ENST00000580095 CYP27B1O15528 508 aa12.6□□□□□ -0.39
TOP3A-209ENST00000580095 GCKRQ14397 625 aa12.6□□□□□ -0.39
TOP3A-209ENST00000580095 SLFNL1Q499Z3 407 aa12.6□□□□□ -0.39
TOP3A-209ENST00000580095 ZNF589Q86UQ0 364 aaPredicted RBP12.6□□□□□ -0.39
TOP3A-209ENST00000580095 CHMP3Q9Y3E7 222 aa12.6□□□□□ -0.39
TOP3A-209ENST00000580095 TUBGCP6Q96RT7 1819 aa12.6□□□□□ -0.39
TOP3A-209ENST00000580095 VPS37CA5D8V6 355 aaPredicted RBP12.59□□□□□ -0.39
TOP3A-209ENST00000580095 STX6O43752 255 aa12.59□□□□□ -0.39
TOP3A-209ENST00000580095 TATP17735 454 aaPredicted RBP12.59□□□□□ -0.39
TOP3A-209ENST00000580095 NEXNQ0ZGT2 675 aa12.59□□□□□ -0.39
TOP3A-209ENST00000580095 FAM173BQ6P4H8 233 aa12.59□□□□□ -0.39
TOP3A-209ENST00000580095 FERMT3Q86UX7 667 aa12.59□□□□□ -0.39
TOP3A-209ENST00000580095 EVI5LQ96CN4 794 aa12.59□□□□□ -0.39
TOP3A-209ENST00000580095 GJB2P29033 226 aa12.59□□□□□ -0.39
TOP3A-209ENST00000580095 STK3Q13188 491 aa12.59□□□□□ -0.39
TOP3A-209ENST00000580095 RUFY2Q8WXA3 655 aa12.59□□□□□ -0.39
TOP3A-209ENST00000580095 CHMP4AQ9BY43 222 aa12.59□□□□□ -0.39
TOP3A-209ENST00000580095 C19orf44Q9H6X5 657 aa12.59□□□□□ -0.39
TOP3A-209ENST00000580095 KDM6AO15550 1401 aaPredicted RBP12.59□□□□□ -0.39
TOP3A-209ENST00000580095 ZSCAN22P10073 491 aaPredicted RBP12.58□□□□□ -0.39
TOP3A-209ENST00000580095 ATF3P18847 181 aa12.58□□□□□ -0.39
TOP3A-209ENST00000580095 ST3GAL1Q11201 340 aa12.58□□□□□ -0.39
TOP3A-209ENST00000580095 ME3Q16798 604 aa12.58□□□□□ -0.39
TOP3A-209ENST00000580095 CREB3L3Q68CJ9 461 aa12.58□□□□□ -0.39
TOP3A-209ENST00000580095 LARP1Q6PKG0 1096 aaKnown RBP12.58□□□□□ -0.39
TOP3A-209ENST00000580095 ANKRD13DQ6ZTN6 518 aa12.58□□□□□ -0.39
TOP3A-209ENST00000580095 ERC1Q8IUD2 1116 aa12.58□□□□□ -0.39
TOP3A-209ENST00000580095 TTC5Q8N0Z6 440 aa12.58□□□□□ -0.39
TOP3A-209ENST00000580095 CYP46A1Q9Y6A2 500 aa12.58□□□□□ -0.39
TOP3A-209ENST00000580095 CCDC171Q6TFL3 1326 aa12.58□□□□□ -0.4
TOP3A-209ENST00000580095 USP42Q9H9J4 1324 aaKnown RBP12.58□□□□□ -0.4
TOP3A-209ENST00000580095 CACNA1FO60840 1977 aa12.58□□□□□ -0.4
TOP3A-209ENST00000580095 MBD3O95983 291 aa12.58□□□□□ -0.4
TOP3A-209ENST00000580095 DNM1Q05193 864 aaKnown RBP12.58□□□□□ -0.4
TOP3A-209ENST00000580095 TFCP2Q12800 502 aa12.58□□□□□ -0.4
TOP3A-209ENST00000580095 CCDC129Q6ZRS4 1044 aa12.58□□□□□ -0.4
TOP3A-209ENST00000580095 DNAJC2Q99543 621 aaKnown RBP12.58□□□□□ -0.4
TOP3A-209ENST00000580095 TPCN1Q9ULQ1 816 aa12.58□□□□□ -0.4
TOP3A-209ENST00000580095 KDM3BQ7LBC6 1761 aa12.58□□□□□ -0.4
TOP3A-209ENST00000580095 NECTIN1Q15223 517 aa12.58□□□□□ -0.4
TOP3A-209ENST00000580095 C1orf167Q5SNV9 1468 aa12.57□□□□□ -0.4
TOP3A-209ENST00000580095 ZSCAN30Q86W11 494 aa12.57□□□□□ -0.4
TOP3A-209ENST00000580095 IL17RAQ96F46 866 aa12.57□□□□□ -0.4
TOP3A-209ENST00000580095 SEC62Q99442 399 aaKnown RBP12.57□□□□□ -0.4
TOP3A-209ENST00000580095 MEGF6O75095 1541 aa12.57□□□□□ -0.4
TOP3A-209ENST00000580095 DBNLQ9UJU6 430 aaKnown RBP12.57□□□□□ -0.4
TOP3A-209ENST00000580095 A0A087WZG4 1122 aa12.56□□□□□ -0.4
TOP3A-209ENST00000580095 SLC27A2O14975 620 aa12.56□□□□□ -0.4
TOP3A-209ENST00000580095 PPFIA3O75145 1194 aa12.56□□□□□ -0.4
TOP3A-209ENST00000580095 ZKSCAN1P17029 563 aaPredicted RBP12.56□□□□□ -0.4
TOP3A-209ENST00000580095 METTL22Q9BUU2 404 aaPredicted RBP12.56□□□□□ -0.4
TOP3A-209ENST00000580095 MSNP26038 577 aaKnown RBP12.56□□□□□ -0.4
TOP3A-209ENST00000580095 IFNL2Q8IZJ0 200 aa12.56□□□□□ -0.4
TOP3A-209ENST00000580095 TSPY26PQ9H489 355 aa12.56□□□□□ -0.4
TOP3A-209ENST00000580095 ZSWIM6Q9HCJ5 1215 aa12.56□□□□□ -0.4
TOP3A-209ENST00000580095 ZNF330Q9Y3S2 320 aaPredicted RBP12.56□□□□□ -0.4
TOP3A-209ENST00000580095 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.56□□□□□ -0.4
TOP3A-209ENST00000580095 F13A1P00488 732 aa12.55□□□□□ -0.4
TOP3A-209ENST00000580095 CABP4P57796 275 aa12.55□□□□□ -0.4
TOP3A-209ENST00000580095 DDX46Q7L014 1031 aaKnown RBP12.55□□□□□ -0.4
TOP3A-209ENST00000580095 DBNDD2Q9BQY9 259 aa12.55□□□□□ -0.4
TOP3A-209ENST00000580095 STRCQ7RTU9 1775 aa12.55□□□□□ -0.4
TOP3A-209ENST00000580095 NCAPD2Q15021 1401 aa12.55□□□□□ -0.4
TOP3A-209ENST00000580095 SNRPA1P09661 255 aaKnown RBP12.55□□□□□ -0.4
TOP3A-209ENST00000580095 LRRC2Q9BYS8 371 aa12.55□□□□□ -0.4
TOP3A-209ENST00000580095 USP54Q70EL1 1684 aa12.55□□□□□ -0.4
TOP3A-209ENST00000580095 LMO7Q8WWI1 1683 aa12.55□□□□□ -0.4
TOP3A-209ENST00000580095 TMEM94Q12767 1356 aa12.55□□□□□ -0.4
TOP3A-209ENST00000580095 HSPA2P54652 639 aa12.55□□□□□ -0.4
TOP3A-209ENST00000580095 PLCB2Q00722 1185 aa12.55□□□□□ -0.4
TOP3A-209ENST00000580095 PTPN12Q05209 780 aaKnown RBP12.55□□□□□ -0.4
TOP3A-209ENST00000580095 VPS53Q5VIR6 699 aa12.55□□□□□ -0.4
TOP3A-209ENST00000580095 MAP4K1Q92918 833 aa12.55□□□□□ -0.4
TOP3A-209ENST00000580095 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.55□□□□□ -0.4
TOP3A-209ENST00000580095 UTYO14607 1347 aa12.54□□□□□ -0.4
TOP3A-209ENST00000580095 GIMAP6Q6P9H5 292 aa12.54□□□□□ -0.4
TOP3A-209ENST00000580095 LMBR1LQ6UX01 489 aa12.54□□□□□ -0.4
TOP3A-209ENST00000580095 LRP10Q7Z4F1 713 aa12.54□□□□□ -0.4
TOP3A-209ENST00000580095 MTMR6Q9Y217 621 aa12.54□□□□□ -0.4
TOP3A-209ENST00000580095 RGPD5Q99666 1765 aa12.54□□□□□ -0.4
TOP3A-209ENST00000580095 A1BGP04217 495 aa12.54□□□□□ -0.4
TOP3A-209ENST00000580095 HCLS1P14317 486 aaPredicted RBP12.54□□□□□ -0.4
TOP3A-209ENST00000580095 TTLL7Q6ZT98 887 aa12.54□□□□□ -0.4
TOP3A-209ENST00000580095 CCDC85AQ96PX6 553 aaPredicted RBP12.54□□□□□ -0.4
TOP3A-209ENST00000580095 SLIT3O75094 1523 aa12.53□□□□□ -0.4
TOP3A-209ENST00000580095 FOSBP53539 338 aa12.53□□□□□ -0.4
TOP3A-209ENST00000580095 PAXIP1Q6ZW49 1069 aaPredicted RBP12.53□□□□□ -0.4
TOP3A-209ENST00000580095 CDC37L1Q7L3B6 337 aa12.53□□□□□ -0.4
TOP3A-209ENST00000580095 PDLIM2Q96JY6 352 aa12.53□□□□□ -0.4
TOP3A-209ENST00000580095 ZNF830Q96NB3 372 aaPredicted RBP12.53□□□□□ -0.4
TOP3A-209ENST00000580095 NEUROD6Q96NK8 337 aa12.53□□□□□ -0.4
TOP3A-209ENST00000580095 ZBTB3Q9H5J0 574 aa12.53□□□□□ -0.4
TOP3A-209ENST00000580095 TNNI3KQ59H18 835 aa12.53□□□□□ -0.4
TOP3A-209ENST00000580095 ZNF594Q96JF6 807 aaPredicted RBP12.53□□□□□ -0.4
TOP3A-209ENST00000580095 FMNL2Q96PY5 1086 aa12.53□□□□□ -0.4
TOP3A-209ENST00000580095 USP25Q9UHP3 1055 aa12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 59.5 ms