RNA–Protein interactions for RNA: ENST00000577751.5

SS18-208, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-208ENST00000577751 TRIM28Q13263 835 aaKnown RBP24.83■■□□□ 1.57
SS18-208ENST00000577751 RIC3Q7Z5B4 369 aa24.83■■□□□ 1.57
SS18-208ENST00000577751 TRMT2AQ8IZ69 625 aaKnown RBP24.83■■□□□ 1.57
SS18-208ENST00000577751 UTP14AQ9BVJ6 771 aaKnown RBP24.83■■□□□ 1.57
SS18-208ENST00000577751 RNF123Q5XPI4 1314 aa24.83■■□□□ 1.56
SS18-208ENST00000577751 DDX58O95786 925 aaKnown RBP24.82■■□□□ 1.56
SS18-208ENST00000577751 YY1P25490 414 aa24.82■■□□□ 1.56
SS18-208ENST00000577751 STYK1Q6J9G0 422 aa24.82■■□□□ 1.56
SS18-208ENST00000577751 CDCA7LQ96GN5 454 aa24.82■■□□□ 1.56
SS18-208ENST00000577751 MASTLQ96GX5 879 aa24.82■■□□□ 1.56
SS18-208ENST00000577751 SLC10A5Q5PT55 438 aa24.81■■□□□ 1.56
SS18-208ENST00000577751 G2E3Q7L622 706 aa24.81■■□□□ 1.56
SS18-208ENST00000577751 ZNF622Q969S3 477 aaKnown RBP eCLIP24.81■■□□□ 1.56
SS18-208ENST00000577751 CRY2Q49AN0 593 aa24.8■■□□□ 1.56
SS18-208ENST00000577751 ATP5J2-PTCD1G3V325 749 aa24.79■■□□□ 1.56
SS18-208ENST00000577751 KSR2Q6VAB6 950 aa24.79■■□□□ 1.56
SS18-208ENST00000577751 NPR1P16066 1061 aa24.78■■□□□ 1.56
SS18-208ENST00000577751 CNKSR1Q969H4 720 aa24.78■■□□□ 1.56
SS18-208ENST00000577751 METTL22Q9BUU2 404 aaPredicted RBP24.78■■□□□ 1.56
SS18-208ENST00000577751 ADCY9O60503 1353 aa24.78■■□□□ 1.56
SS18-208ENST00000577751 SLX4Q8IY92 1834 aa24.77■■□□□ 1.56
SS18-208ENST00000577751 CACNA1SQ13698 1873 aa24.77■■□□□ 1.56
SS18-208ENST00000577751 PI4KAP2A4QPH2 592 aa24.77■■□□□ 1.56
SS18-208ENST00000577751 FLIIQ13045 1269 aa24.77■■□□□ 1.56
SS18-208ENST00000577751 ARHGAP27Q6ZUM4 889 aa24.77■■□□□ 1.56
SS18-208ENST00000577751 PI4KAP1Q8N8J0 262 aa24.77■■□□□ 1.56
SS18-208ENST00000577751 TRMT112Q9UI30 125 aaKnown RBP24.77■■□□□ 1.56
SS18-208ENST00000577751 MAP3K2Q9Y2U5 619 aa24.77■■□□□ 1.56
SS18-208ENST00000577751 MYD88Q99836 296 aa24.76■■□□□ 1.55
SS18-208ENST00000577751 SH3TC1Q8TE82 1336 aa24.76■■□□□ 1.55
SS18-208ENST00000577751 SYNE4Q8N205 404 aa24.75■■□□□ 1.55
SS18-208ENST00000577751 PRPF40BQ6NWY9 871 aaKnown RBP24.74■■□□□ 1.55
SS18-208ENST00000577751 C3orf67Q6ZVT6 689 aa24.74■■□□□ 1.55
SS18-208ENST00000577751 CCDC191Q8NCU4 936 aa24.74■■□□□ 1.55
SS18-208ENST00000577751 NLRP3Q96P20 1036 aa24.74■■□□□ 1.55
SS18-208ENST00000577751 LAMB2P55268 1798 aa24.74■■□□□ 1.55
SS18-208ENST00000577751 DDX60Q8IY21 1712 aaKnown RBP24.73■■□□□ 1.55
SS18-208ENST00000577751 HOXA10P31260 410 aaPredicted RBP24.73■■□□□ 1.55
SS18-208ENST00000577751 ALDH1B1P30837 517 aa24.72■■□□□ 1.55
SS18-208ENST00000577751 C7orf43Q8WVR3 580 aa24.72■■□□□ 1.55
SS18-208ENST00000577751 FAM89AQ96GI7 184 aa24.72■■□□□ 1.55
SS18-208ENST00000577751 SBF1O95248 1867 aa24.71■■□□□ 1.55
SS18-208ENST00000577751 C21orf2O43822 256 aa24.71■■□□□ 1.55
SS18-208ENST00000577751 IGKV5-2P06315 115 aa24.71■■□□□ 1.55
SS18-208ENST00000577751 HCLS1P14317 486 aaPredicted RBP24.71■■□□□ 1.55
SS18-208ENST00000577751 FKBP5Q13451 457 aaPredicted RBP24.71■■□□□ 1.55
SS18-208ENST00000577751 ZBTB38Q8NAP3 1195 aaPredicted RBP24.71■■□□□ 1.55
SS18-208ENST00000577751 ZNF428Q96B54 188 aa24.71■■□□□ 1.55
SS18-208ENST00000577751 FER1L6Q2WGJ9 1857 aa24.7■■□□□ 1.55
SS18-208ENST00000577751 HNRNPUQ00839 825 aaKnown RBP eCLIP24.7■■□□□ 1.54
SS18-208ENST00000577751 CWC25Q9NXE8 425 aaPredicted RBP24.7■■□□□ 1.54
SS18-208ENST00000577751 NEXNQ0ZGT2 675 aa24.69■■□□□ 1.54
SS18-208ENST00000577751 RPGRQ92834 1020 aaKnown RBP24.69■■□□□ 1.54
SS18-208ENST00000577751 CRAMP1Q96RY5 1269 aa24.69■■□□□ 1.54
SS18-208ENST00000577751 DNAAF4Q8WXU2 420 aa24.68■■□□□ 1.54
SS18-208ENST00000577751 NFKBIEO00221 500 aa24.67■■□□□ 1.54
SS18-208ENST00000577751 PCCAP05165 728 aaPredicted RBP24.67■■□□□ 1.54
SS18-208ENST00000577751 CT47B1P0C2W7 299 aaPredicted RBP24.67■■□□□ 1.54
SS18-208ENST00000577751 MRPL50Q8N5N7 158 aaKnown RBP24.67■■□□□ 1.54
SS18-208ENST00000577751 RBM17Q96I25 401 aaKnown RBP24.67■■□□□ 1.54
SS18-208ENST00000577751 ZNF219Q9P2Y4 722 aaPredicted RBP24.67■■□□□ 1.54
SS18-208ENST00000577751 NEURL1BA8MQ27 555 aa24.66■■□□□ 1.54
SS18-208ENST00000577751 IRS4O14654 1257 aaPredicted RBP24.66■■□□□ 1.54
SS18-208ENST00000577751 SOGA3Q5TF21 947 aa24.66■■□□□ 1.54
SS18-208ENST00000577751 SF3B3Q15393 1217 aaKnown RBP24.65■■□□□ 1.54
SS18-208ENST00000577751 CWF19L2Q2TBE0 894 aaKnown RBP24.65■■□□□ 1.54
SS18-208ENST00000577751 ALDH1L2Q3SY69 923 aa24.65■■□□□ 1.54
SS18-208ENST00000577751 RTL5Q5HYW3 569 aaPredicted RBP24.65■■□□□ 1.54
SS18-208ENST00000577751 SSH1Q8WYL5 1049 aa24.65■■□□□ 1.54
SS18-208ENST00000577751 CCDC88AQ3V6T2 1871 aa24.64■■□□□ 1.54
SS18-208ENST00000577751 F6X3S4 739 aa24.64■■□□□ 1.54
SS18-208ENST00000577751 PRELPP51888 382 aa24.64■■□□□ 1.54
SS18-208ENST00000577751 RASSF7Q02833 373 aa24.64■■□□□ 1.54
SS18-208ENST00000577751 ZNF784Q8NCA9 323 aaPredicted RBP24.64■■□□□ 1.54
SS18-208ENST00000577751 LINS1Q8NG48 757 aa24.64■■□□□ 1.54
SS18-208ENST00000577751 LTBP3Q9NS15 1303 aa24.63■■□□□ 1.53
SS18-208ENST00000577751 C9orf131Q5VYM1 1079 aa24.63■■□□□ 1.53
SS18-208ENST00000577751 CDHR2Q9BYE9 1310 aa24.62■■□□□ 1.53
SS18-208ENST00000577751 SNED1Q8TER0 1413 aa24.62■■□□□ 1.53
SS18-208ENST00000577751 HSP90B1P14625 803 aaKnown RBP24.62■■□□□ 1.53
SS18-208ENST00000577751 CCDC93Q567U6 631 aa24.62■■□□□ 1.53
SS18-208ENST00000577751 ABCC4O15439 1325 aa24.61■■□□□ 1.53
SS18-208ENST00000577751 H7C1W4 665 aa24.61■■□□□ 1.53
SS18-208ENST00000577751 GCKRQ14397 625 aa24.61■■□□□ 1.53
SS18-208ENST00000577751 BEND3Q5T5X7 828 aa24.61■■□□□ 1.53
SS18-208ENST00000577751 OLFM4Q6UX06 510 aa24.61■■□□□ 1.53
SS18-208ENST00000577751 JARID2Q92833 1246 aaPredicted RBP24.61■■□□□ 1.53
SS18-208ENST00000577751 TAF1P21675 1872 aa24.61■■□□□ 1.53
SS18-208ENST00000577751 ZBED9Q6R2W3 1325 aa24.61■■□□□ 1.53
SS18-208ENST00000577751 PDE8AO60658 829 aa24.6■■□□□ 1.53
SS18-208ENST00000577751 LMNB1P20700 586 aa24.6■■□□□ 1.53
SS18-208ENST00000577751 DDX46Q7L014 1031 aaKnown RBP24.6■■□□□ 1.53
SS18-208ENST00000577751 RNF181Q9P0P0 153 aa24.6■■□□□ 1.53
SS18-208ENST00000577751 PTPRCP08575 1304 aa24.6■■□□□ 1.53
SS18-208ENST00000577751 BBOX1O75936 387 aa24.59■■□□□ 1.53
SS18-208ENST00000577751 CC2D2BQ6DHV5 1058 aa24.59■■□□□ 1.53
SS18-208ENST00000577751 RTKN2Q8IZC4 609 aa24.59■■□□□ 1.53
SS18-208ENST00000577751 TAOK3Q9H2K8 898 aa24.59■■□□□ 1.53
SS18-208ENST00000577751 DICER1Q9UPY3 1922 aaKnown RBP24.59■■□□□ 1.53
SS18-208ENST00000577751 PPEF1O14829 653 aaPredicted RBP24.58■■□□□ 1.53
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms