RNA–Protein interactions for RNA: ENST00000574933.1

CCDC40-213, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 326 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-213ENST00000574933 DDX60Q8IY21 1712 aaKnown RBP23.07■■□□□ 1.28
CCDC40-213ENST00000574933 NTSR2O95665 410 aa23.06■■□□□ 1.28
CCDC40-213ENST00000574933 INTS3Q68E01 1043 aaKnown RBP23.05■■□□□ 1.28
CCDC40-213ENST00000574933 TPTE2Q6XPS3 522 aa23.05■■□□□ 1.28
CCDC40-213ENST00000574933 NBPF5PQ86XG9 351 aaPredicted RBP23.05■■□□□ 1.28
CCDC40-213ENST00000574933 SRCIN1Q9C0H9 1055 aa23.05■■□□□ 1.28
CCDC40-213ENST00000574933 CWC25Q9NXE8 425 aaPredicted RBP23.05■■□□□ 1.28
CCDC40-213ENST00000574933 RIC1Q4ADV7 1423 aa23.05■■□□□ 1.28
CCDC40-213ENST00000574933 CCT4P50991 539 aaKnown RBP23.04■■□□□ 1.28
CCDC40-213ENST00000574933 CWF19L2Q2TBE0 894 aaKnown RBP23.04■■□□□ 1.28
CCDC40-213ENST00000574933 PRR5LQ6MZQ0 368 aa23.04■■□□□ 1.28
CCDC40-213ENST00000574933 SLC4A10Q6U841 1118 aa23.04■■□□□ 1.28
CCDC40-213ENST00000574933 GOLGA6L2Q8N9W4 650 aaPredicted RBP23.04■■□□□ 1.28
CCDC40-213ENST00000574933 UTP14AQ9BVJ6 771 aaKnown RBP23.04■■□□□ 1.28
CCDC40-213ENST00000574933 C10orf71Q711Q0 1435 aa23.04■■□□□ 1.28
CCDC40-213ENST00000574933 KIAA1551Q9HCM1 1747 aa23.03■■□□□ 1.28
CCDC40-213ENST00000574933 MS4A1P11836 297 aa23.03■■□□□ 1.28
CCDC40-213ENST00000574933 GCKRQ14397 625 aa23.03■■□□□ 1.28
CCDC40-213ENST00000574933 TNNQ9UQP3 1299 aa23.03■■□□□ 1.28
CCDC40-213ENST00000574933 PCCAP05165 728 aaPredicted RBP23.02■■□□□ 1.28
CCDC40-213ENST00000574933 DZIP1LQ8IYY4 767 aaKnown RBP23.02■■□□□ 1.28
CCDC40-213ENST00000574933 CNBD1Q8NA66 436 aa23.02■■□□□ 1.28
CCDC40-213ENST00000574933 ZBTB38Q8NAP3 1195 aaPredicted RBP23.02■■□□□ 1.28
CCDC40-213ENST00000574933 DLEC1Q9Y238 1755 aa23.01■■□□□ 1.27
CCDC40-213ENST00000574933 H7C1W4 665 aa23.01■■□□□ 1.27
CCDC40-213ENST00000574933 SLC10A5Q5PT55 438 aa23.01■■□□□ 1.27
CCDC40-213ENST00000574933 TRMT112Q9UI30 125 aaKnown RBP23.01■■□□□ 1.27
CCDC40-213ENST00000574933 SH3TC1Q8TE82 1336 aa23.01■■□□□ 1.27
CCDC40-213ENST00000574933 PDE3AQ14432 1141 aa23■■□□□ 1.27
CCDC40-213ENST00000574933 UTYO14607 1347 aa23■■□□□ 1.27
CCDC40-213ENST00000574933 CDHR2Q9BYE9 1310 aa23■■□□□ 1.27
CCDC40-213ENST00000574933 TNRC6CQ9HCJ0 1690 aaKnown RBP23■■□□□ 1.27
CCDC40-213ENST00000574933 PLIN1O60240 522 aa22.99■■□□□ 1.27
CCDC40-213ENST00000574933 RLBP1P12271 317 aa22.99■■□□□ 1.27
CCDC40-213ENST00000574933 CASP7P55210 303 aa22.99■■□□□ 1.27
CCDC40-213ENST00000574933 RRP1P56182 461 aaKnown RBP22.99■■□□□ 1.27
CCDC40-213ENST00000574933 CLUAP1Q96AJ1 413 aa22.99■■□□□ 1.27
CCDC40-213ENST00000574933 BRCA1P38398 1863 aaKnown RBP22.98■■□□□ 1.27
CCDC40-213ENST00000574933 FAM177BA6PVY3 158 aa22.98■■□□□ 1.27
CCDC40-213ENST00000574933 ST5P78524 1137 aa22.98■■□□□ 1.27
CCDC40-213ENST00000574933 ERFEQ4G0M1 354 aa22.98■■□□□ 1.27
CCDC40-213ENST00000574933 NUTM1Q86Y26 1132 aa22.98■■□□□ 1.27
CCDC40-213ENST00000574933 FTSJ3Q8IY81 847 aaKnown RBP22.98■■□□□ 1.27
CCDC40-213ENST00000574933 BRIP1Q9BX63 1249 aa22.98■■□□□ 1.27
CCDC40-213ENST00000574933 CD2APQ9Y5K6 639 aa22.98■■□□□ 1.27
CCDC40-213ENST00000574933 ABCC12Q96J65 1359 aa22.98■■□□□ 1.27
CCDC40-213ENST00000574933 COL11A2P13942 1736 aaPredicted RBP22.97■■□□□ 1.27
CCDC40-213ENST00000574933 KLRG2A4D1S0 409 aaPredicted RBP22.97■■□□□ 1.27
CCDC40-213ENST00000574933 GRM8O00222 908 aa22.97■■□□□ 1.27
CCDC40-213ENST00000574933 TMEM57Q8N5G2 664 aa22.97■■□□□ 1.27
CCDC40-213ENST00000574933 FAM89AQ96GI7 184 aa22.97■■□□□ 1.27
CCDC40-213ENST00000574933 GTF2E1P29083 439 aaPredicted RBP22.96■■□□□ 1.27
CCDC40-213ENST00000574933 SYNE4Q8N205 404 aa22.96■■□□□ 1.27
CCDC40-213ENST00000574933 USP44Q9H0E7 712 aa22.96■■□□□ 1.27
CCDC40-213ENST00000574933 HSP90B1P14625 803 aaKnown RBP22.95■■□□□ 1.26
CCDC40-213ENST00000574933 PLA2G12BQ9BX93 195 aa22.95■■□□□ 1.26
CCDC40-213ENST00000574933 PDZRN3Q9UPQ7 1066 aa22.95■■□□□ 1.26
CCDC40-213ENST00000574933 NPHP1O15259 732 aa22.94■■□□□ 1.26
CCDC40-213ENST00000574933 UBE3BQ7Z3V4 1068 aa22.94■■□□□ 1.26
CCDC40-213ENST00000574933 PANK1Q8TE04 598 aa22.94■■□□□ 1.26
CCDC40-213ENST00000574933 C9orf78Q9NZ63 289 aaPredicted RBP22.94■■□□□ 1.26
CCDC40-213ENST00000574933 IRS4O14654 1257 aaPredicted RBP22.93■■□□□ 1.26
CCDC40-213ENST00000574933 PDE6BP35913 854 aa22.93■■□□□ 1.26
CCDC40-213ENST00000574933 CENPBP07199 599 aaPredicted RBP22.92■■□□□ 1.26
CCDC40-213ENST00000574933 NBPF7P0C2Y1 421 aaPredicted RBP22.92■■□□□ 1.26
CCDC40-213ENST00000574933 TGFB2P61812 414 aa22.92■■□□□ 1.26
CCDC40-213ENST00000574933 CCDC24Q8N4L8 307 aa22.92■■□□□ 1.26
CCDC40-213ENST00000574933 PDE8AO60658 829 aa22.91■■□□□ 1.26
CCDC40-213ENST00000574933 HCLS1P14317 486 aaPredicted RBP22.91■■□□□ 1.26
CCDC40-213ENST00000574933 MVPQ14764 893 aaKnown RBP22.91■■□□□ 1.26
CCDC40-213ENST00000574933 CRY2Q49AN0 593 aa22.91■■□□□ 1.26
CCDC40-213ENST00000574933 C20orf194Q5TEA3 1177 aa22.91■■□□□ 1.26
CCDC40-213ENST00000574933 JARID2Q92833 1246 aaPredicted RBP22.91■■□□□ 1.26
CCDC40-213ENST00000574933 PPP1R1BQ9UD71 204 aaPredicted RBP22.91■■□□□ 1.26
CCDC40-213ENST00000574933 SUPT16HQ9Y5B9 1047 aaKnown RBP22.91■■□□□ 1.26
CCDC40-213ENST00000574933 TAF1P21675 1872 aa22.9■■□□□ 1.26
CCDC40-213ENST00000574933 CACNA1SQ13698 1873 aa22.9■■□□□ 1.26
CCDC40-213ENST00000574933 SF3B3Q15393 1217 aaKnown RBP22.9■■□□□ 1.26
CCDC40-213ENST00000574933 RTL5Q5HYW3 569 aaPredicted RBP22.9■■□□□ 1.26
CCDC40-213ENST00000574933 NLRP3Q96P20 1036 aa22.9■■□□□ 1.26
CCDC40-213ENST00000574933 GNAI3P08754 354 aa22.89■■□□□ 1.25
CCDC40-213ENST00000574933 ITPRIPQ8IWB1 547 aa22.89■■□□□ 1.25
CCDC40-213ENST00000574933 MEIS3Q99687 375 aa22.89■■□□□ 1.25
CCDC40-213ENST00000574933 FHDC1Q9C0D6 1143 aaPredicted RBP22.89■■□□□ 1.25
CCDC40-213ENST00000574933 ZBTB7BO15156 539 aaPredicted RBP22.88■■□□□ 1.25
CCDC40-213ENST00000574933 KAZALD1Q96I82 304 aa22.88■■□□□ 1.25
CCDC40-213ENST00000574933 DDX19BQ9UMR2 479 aa22.88■■□□□ 1.25
CCDC40-213ENST00000574933 HDAC5Q9UQL6 1122 aa22.88■■□□□ 1.25
CCDC40-213ENST00000574933 ARFGEF1Q9Y6D6 1849 aa22.87■■□□□ 1.25
CCDC40-213ENST00000574933 SRGNP10124 158 aa22.87■■□□□ 1.25
CCDC40-213ENST00000574933 C3orf67Q6ZVT6 689 aa22.87■■□□□ 1.25
CCDC40-213ENST00000574933 SUCLG2Q96I99 432 aa22.87■■□□□ 1.25
CCDC40-213ENST00000574933 SYT17Q9BSW7 474 aa22.87■■□□□ 1.25
CCDC40-213ENST00000574933 COG6Q9Y2V7 657 aa22.87■■□□□ 1.25
CCDC40-213ENST00000574933 CSF1RP07333 972 aa22.86■■□□□ 1.25
CCDC40-213ENST00000574933 UBTFL1P0CB47 393 aaPredicted RBP22.86■■□□□ 1.25
CCDC40-213ENST00000574933 HOXA10P31260 410 aaPredicted RBP22.86■■□□□ 1.25
CCDC40-213ENST00000574933 FOXO4P98177 505 aa22.86■■□□□ 1.25
CCDC40-213ENST00000574933 RTL9Q8NET4 1388 aa22.86■■□□□ 1.25
CCDC40-213ENST00000574933 SLX4Q8IY92 1834 aa22.85■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms