RNA–Protein interactions for RNA: ENST00000573867.1

SCARF1-207, Transcript of scavenger receptor class F member 1, humanhuman

TSL 2

Gene SCARF1, Length 939 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCARF1-207ENST00000573867 VAMP4O75379 141 aa35.76■■■■□ 3.32
SCARF1-207ENST00000573867 C3orf67Q6ZVT6 689 aa35.76■■■■□ 3.32
SCARF1-207ENST00000573867 UTP14AQ9BVJ6 771 aaKnown RBP35.76■■■■□ 3.32
SCARF1-207ENST00000573867 SLX4Q8IY92 1834 aa35.76■■■■□ 3.31
SCARF1-207ENST00000573867 SYNE4Q8N205 404 aa35.75■■■■□ 3.31
SCARF1-207ENST00000573867 ATP5J2-PTCD1G3V325 749 aa35.74■■■■□ 3.31
SCARF1-207ENST00000573867 NPR1P16066 1061 aa35.74■■■■□ 3.31
SCARF1-207ENST00000573867 CRY2Q49AN0 593 aa35.74■■■■□ 3.31
SCARF1-207ENST00000573867 PRPF40BQ6NWY9 871 aaKnown RBP35.74■■■■□ 3.31
SCARF1-207ENST00000573867 CHMP4AQ9BY43 222 aa35.74■■■■□ 3.31
SCARF1-207ENST00000573867 MYH16Q9H6N6 1097 aa35.74■■■■□ 3.31
SCARF1-207ENST00000573867 CACNA1SQ13698 1873 aa35.73■■■■□ 3.31
SCARF1-207ENST00000573867 G2E3Q7L622 706 aa35.73■■■■□ 3.31
SCARF1-207ENST00000573867 CNKSR1Q969H4 720 aa35.73■■■■□ 3.31
SCARF1-207ENST00000573867 ZNF219Q9P2Y4 722 aaPredicted RBP35.73■■■■□ 3.31
SCARF1-207ENST00000573867 C21orf2O43822 256 aa35.72■■■■□ 3.31
SCARF1-207ENST00000573867 RASSF7Q02833 373 aa35.72■■■■□ 3.31
SCARF1-207ENST00000573867 RIC3Q7Z5B4 369 aa35.72■■■■□ 3.31
SCARF1-207ENST00000573867 STK31Q9BXU1 1019 aa35.71■■■■□ 3.31
SCARF1-207ENST00000573867 PRELPP51888 382 aa35.7■■■■□ 3.31
SCARF1-207ENST00000573867 SLC10A5Q5PT55 438 aa35.7■■■■□ 3.31
SCARF1-207ENST00000573867 RNF123Q5XPI4 1314 aa35.69■■■■□ 3.3
SCARF1-207ENST00000573867 NFKBIEO00221 500 aa35.69■■■■□ 3.3
SCARF1-207ENST00000573867 TRMT112Q9UI30 125 aaKnown RBP35.69■■■■□ 3.3
SCARF1-207ENST00000573867 SLC4A2P04920 1241 aa35.68■■■■□ 3.3
SCARF1-207ENST00000573867 C7orf43Q8WVR3 580 aa35.68■■■■□ 3.3
SCARF1-207ENST00000573867 TRIM28Q13263 835 aaKnown RBP35.67■■■■□ 3.3
SCARF1-207ENST00000573867 C9orf131Q5VYM1 1079 aa35.67■■■■□ 3.3
SCARF1-207ENST00000573867 HCLS1P14317 486 aaPredicted RBP35.66■■■■□ 3.3
SCARF1-207ENST00000573867 MYD88Q99836 296 aa35.66■■■■□ 3.3
SCARF1-207ENST00000573867 SH3TC1Q8TE82 1336 aa35.65■■■■□ 3.3
SCARF1-207ENST00000573867 DDX58O95786 925 aaKnown RBP35.64■■■■□ 3.3
SCARF1-207ENST00000573867 HOXA10P31260 410 aaPredicted RBP35.64■■■■□ 3.3
SCARF1-207ENST00000573867 OLFM4Q6UX06 510 aa35.64■■■■□ 3.3
SCARF1-207ENST00000573867 METTL22Q9BUU2 404 aaPredicted RBP35.64■■■■□ 3.3
SCARF1-207ENST00000573867 MAP3K2Q9Y2U5 619 aa35.64■■■■□ 3.3
SCARF1-207ENST00000573867 SBF1O95248 1867 aa35.64■■■■□ 3.3
SCARF1-207ENST00000573867 PI4KAP2A4QPH2 592 aa35.63■■■■□ 3.29
SCARF1-207ENST00000573867 KSR2Q6VAB6 950 aa35.63■■■■□ 3.29
SCARF1-207ENST00000573867 PI4KAP1Q8N8J0 262 aa35.63■■■■□ 3.29
SCARF1-207ENST00000573867 CDCA7LQ96GN5 454 aa35.63■■■■□ 3.29
SCARF1-207ENST00000573867 LAMB2P55268 1798 aa35.63■■■■□ 3.29
SCARF1-207ENST00000573867 FER1L6Q2WGJ9 1857 aa35.63■■■■□ 3.29
SCARF1-207ENST00000573867 SLFN5Q08AF3 891 aa35.62■■■■□ 3.29
SCARF1-207ENST00000573867 SLC51AQ86UW1 340 aa35.62■■■■□ 3.29
SCARF1-207ENST00000573867 FAM89AQ96GI7 184 aa35.62■■■■□ 3.29
SCARF1-207ENST00000573867 NLRP3Q96P20 1036 aa35.62■■■■□ 3.29
SCARF1-207ENST00000573867 DDX60Q8IY21 1712 aaKnown RBP35.62■■■■□ 3.29
SCARF1-207ENST00000573867 E9PSI1 815 aa35.61■■■■□ 3.29
SCARF1-207ENST00000573867 FLIIQ13045 1269 aa35.61■■■■□ 3.29
SCARF1-207ENST00000573867 RPGRQ92834 1020 aaKnown RBP35.61■■■■□ 3.29
SCARF1-207ENST00000573867 RNF181Q9P0P0 153 aa35.61■■■■□ 3.29
SCARF1-207ENST00000573867 ALDH1B1P30837 517 aa35.6■■■■□ 3.29
SCARF1-207ENST00000573867 RTL5Q5HYW3 569 aaPredicted RBP35.59■■■■□ 3.29
SCARF1-207ENST00000573867 IGKV5-2P06315 115 aa35.58■■■■□ 3.29
SCARF1-207ENST00000573867 ZNF526Q8TF50 670 aaPredicted RBP35.57■■■■□ 3.28
SCARF1-207ENST00000573867 CRAMP1Q96RY5 1269 aa35.57■■■■□ 3.28
SCARF1-207ENST00000573867 SNED1Q8TER0 1413 aa35.57■■■■□ 3.28
SCARF1-207ENST00000573867 LMNB1P20700 586 aa35.56■■■■□ 3.28
SCARF1-207ENST00000573867 CCDC191Q8NCU4 936 aa35.56■■■■□ 3.28
SCARF1-207ENST00000573867 RBM17Q96I25 401 aaKnown RBP35.55■■■■□ 3.28
SCARF1-207ENST00000573867 CCDC93Q567U6 631 aa35.54■■■■□ 3.28
SCARF1-207ENST00000573867 TRMT2AQ8IZ69 625 aaKnown RBP35.54■■■■□ 3.28
SCARF1-207ENST00000573867 ZBTB38Q8NAP3 1195 aaPredicted RBP35.54■■■■□ 3.28
SCARF1-207ENST00000573867 JARID2Q92833 1246 aaPredicted RBP35.54■■■■□ 3.28
SCARF1-207ENST00000573867 ABCC4O15439 1325 aa35.54■■■■□ 3.28
SCARF1-207ENST00000573867 LTBP3Q9NS15 1303 aa35.54■■■■□ 3.28
SCARF1-207ENST00000573867 FKBP5Q13451 457 aaPredicted RBP35.53■■■■□ 3.28
SCARF1-207ENST00000573867 SOGA3Q5TF21 947 aa35.53■■■■□ 3.28
SCARF1-207ENST00000573867 CWC25Q9NXE8 425 aaPredicted RBP35.53■■■■□ 3.28
SCARF1-207ENST00000573867 CWF19L2Q2TBE0 894 aaKnown RBP35.52■■■■□ 3.28
SCARF1-207ENST00000573867 TAOK3Q9H2K8 898 aa35.52■■■■□ 3.28
SCARF1-207ENST00000573867 CACNA1FO60840 1977 aa35.52■■■■□ 3.28
SCARF1-207ENST00000573867 IRS4O14654 1257 aaPredicted RBP35.51■■■■□ 3.28
SCARF1-207ENST00000573867 CCDC88AQ3V6T2 1871 aa35.5■■■■□ 3.27
SCARF1-207ENST00000573867 PCCAP05165 728 aaPredicted RBP35.5■■■■□ 3.27
SCARF1-207ENST00000573867 COL4A1P02462 1669 aa35.49■■■■□ 3.27
SCARF1-207ENST00000573867 PPEF1O14829 653 aaPredicted RBP35.49■■■■□ 3.27
SCARF1-207ENST00000573867 TIAM2Q8IVF5 1701 aa35.49■■■■□ 3.27
SCARF1-207ENST00000573867 NEURL1BA8MQ27 555 aa35.48■■■■□ 3.27
SCARF1-207ENST00000573867 DNAAF4Q8WXU2 420 aa35.48■■■■□ 3.27
SCARF1-207ENST00000573867 GPBP1L1Q9HC44 474 aaPredicted RBP35.48■■■■□ 3.27
SCARF1-207ENST00000573867 SF3B3Q15393 1217 aaKnown RBP35.47■■■■□ 3.27
SCARF1-207ENST00000573867 F6X3S4 739 aa35.46■■■■□ 3.27
SCARF1-207ENST00000573867 FKBP4Q02790 459 aaKnown RBP eCLIP35.46■■■■□ 3.27
SCARF1-207ENST00000573867 NEXNQ0ZGT2 675 aa35.46■■■■□ 3.27
SCARF1-207ENST00000573867 TAF1P21675 1872 aa35.46■■■■□ 3.27
SCARF1-207ENST00000573867 DDX46Q7L014 1031 aaKnown RBP35.44■■■■□ 3.26
SCARF1-207ENST00000573867 RTKN2Q8IZC4 609 aa35.44■■■■□ 3.26
SCARF1-207ENST00000573867 GRAPQ13588 217 aa35.43■■■■□ 3.26
SCARF1-207ENST00000573867 MRPL50Q8N5N7 158 aaKnown RBP35.43■■■■□ 3.26
SCARF1-207ENST00000573867 GRAPLQ8TC17 118 aaPredicted RBP35.43■■■■□ 3.26
SCARF1-207ENST00000573867 ZNF277Q9NRM2 450 aaPredicted RBP35.43■■■■□ 3.26
SCARF1-207ENST00000573867 ZC3H4Q9UPT8 1303 aaKnown RBP35.42■■■■□ 3.26
SCARF1-207ENST00000573867 DICER1Q9UPY3 1922 aaKnown RBP35.42■■■■□ 3.26
SCARF1-207ENST00000573867 CDHR2Q9BYE9 1310 aa35.41■■■■□ 3.26
SCARF1-207ENST00000573867 CC2D2BQ6DHV5 1058 aa35.41■■■■□ 3.26
SCARF1-207ENST00000573867 SSH1Q8WYL5 1049 aa35.41■■■■□ 3.26
SCARF1-207ENST00000573867 ATP6V0A2Q9Y487 856 aa35.41■■■■□ 3.26
SCARF1-207ENST00000573867 LINS1Q8NG48 757 aa35.4■■■■□ 3.26
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms