RNA–Protein interactions for RNA: ENST00000572809.1

NUP88-205, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 771 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-205ENST00000572809 TUBGCP6Q96RT7 1819 aa9.93□□□□□ -0.82
NUP88-205ENST00000572809 C4BP0C0L5 1744 aa9.93□□□□□ -0.82
NUP88-205ENST00000572809 COL3A1P02461 1466 aaPredicted RBP9.93□□□□□ -0.82
NUP88-205ENST00000572809 GNAT3A8MTJ3 354 aa9.93□□□□□ -0.82
NUP88-205ENST00000572809 U2AF1L5P0DN76 240 aaPredicted RBP9.93□□□□□ -0.82
NUP88-205ENST00000572809 U2AF1Q01081 240 aaKnown RBP eCLIP9.93□□□□□ -0.82
NUP88-205ENST00000572809 GAS2L2Q8NHY3 880 aa9.93□□□□□ -0.82
NUP88-205ENST00000572809 LCE2BO14633 110 aa9.92□□□□□ -0.82
NUP88-205ENST00000572809 RPS6KA4O75676 772 aa9.92□□□□□ -0.82
NUP88-205ENST00000572809 FCHSD2O94868 740 aa9.92□□□□□ -0.82
NUP88-205ENST00000572809 PRKAR2BP31323 418 aa9.92□□□□□ -0.82
NUP88-205ENST00000572809 DDX10Q13206 875 aaKnown RBP9.92□□□□□ -0.82
NUP88-205ENST00000572809 SLC39A6Q13433 755 aa9.92□□□□□ -0.82
NUP88-205ENST00000572809 LAPTM4AQ15012 233 aa9.92□□□□□ -0.82
NUP88-205ENST00000572809 IL17REQ8NFR9 667 aa9.92□□□□□ -0.82
NUP88-205ENST00000572809 FBXW7Q969H0 707 aa9.92□□□□□ -0.82
NUP88-205ENST00000572809 PHACTR3Q96KR7 559 aa9.92□□□□□ -0.82
NUP88-205ENST00000572809 RSPH6AQ9H0K4 717 aa9.92□□□□□ -0.82
NUP88-205ENST00000572809 MAP3K5Q99683 1374 aa9.91□□□□□ -0.82
NUP88-205ENST00000572809 GFRA3O60609 400 aa9.91□□□□□ -0.82
NUP88-205ENST00000572809 ZMYND10O75800 440 aa9.91□□□□□ -0.82
NUP88-205ENST00000572809 TRAF7Q6Q0C0 670 aa9.91□□□□□ -0.82
NUP88-205ENST00000572809 COL24A1Q17RW2 1714 aa9.9□□□□□ -0.82
NUP88-205ENST00000572809 CNTNAP4Q9C0A0 1308 aa9.9□□□□□ -0.82
NUP88-205ENST00000572809 DPYSL4O14531 572 aa9.9□□□□□ -0.82
NUP88-205ENST00000572809 YY1P25490 414 aa9.9□□□□□ -0.82
NUP88-205ENST00000572809 RFC4P35249 363 aa9.9□□□□□ -0.82
NUP88-205ENST00000572809 CRKLP46109 303 aaKnown RBP9.9□□□□□ -0.82
NUP88-205ENST00000572809 TEFQ10587 303 aa9.9□□□□□ -0.82
NUP88-205ENST00000572809 GPR162Q16538 588 aa9.9□□□□□ -0.82
NUP88-205ENST00000572809 NLGN1Q8N2Q7 840 aa9.9□□□□□ -0.82
NUP88-205ENST00000572809 SLC24A3Q9HC58 644 aa9.9□□□□□ -0.82
NUP88-205ENST00000572809 CD2APQ9Y5K6 639 aa9.9□□□□□ -0.82
NUP88-205ENST00000572809 GTF3C3Q9Y5Q9 886 aa9.9□□□□□ -0.82
NUP88-205ENST00000572809 SCN11AQ9UI33 1791 aa9.9□□□□□ -0.82
NUP88-205ENST00000572809 UBR3Q6ZT12 1888 aa9.89□□□□□ -0.83
NUP88-205ENST00000572809 RALBP1Q15311 655 aa9.89□□□□□ -0.83
NUP88-205ENST00000572809 DNAJC10Q8IXB1 793 aa9.89□□□□□ -0.83
NUP88-205ENST00000572809 TTC5Q8N0Z6 440 aa9.89□□□□□ -0.83
NUP88-205ENST00000572809 NLGN2Q8NFZ4 835 aa9.89□□□□□ -0.83
NUP88-205ENST00000572809 ZNF831Q5JPB2 1677 aa9.89□□□□□ -0.83
NUP88-205ENST00000572809 NEFMP07197 916 aa9.88□□□□□ -0.83
NUP88-205ENST00000572809 CYP19A1P11511 503 aaPredicted RBP9.88□□□□□ -0.83
NUP88-205ENST00000572809 MLLT3P42568 568 aaPredicted RBP9.88□□□□□ -0.83
NUP88-205ENST00000572809 INTS5Q6P9B9 1019 aaKnown RBP9.88□□□□□ -0.83
NUP88-205ENST00000572809 RTF1Q92541 710 aaKnown RBP9.88□□□□□ -0.83
NUP88-205ENST00000572809 CDKN2AIPQ9NXV6 580 aaPredicted RBP9.88□□□□□ -0.83
NUP88-205ENST00000572809 TSR3Q9UJK0 312 aaKnown RBP9.88□□□□□ -0.83
NUP88-205ENST00000572809 HPS5Q9UPZ3 1129 aa9.88□□□□□ -0.83
NUP88-205ENST00000572809 BTBD11A6QL63 1104 aa9.87□□□□□ -0.83
NUP88-205ENST00000572809 HTATSF1O43719 755 aaKnown RBP9.87□□□□□ -0.83
NUP88-205ENST00000572809 GYS1P13807 737 aa9.87□□□□□ -0.83
NUP88-205ENST00000572809 C6orf132Q5T0Z8 1188 aa9.87□□□□□ -0.83
NUP88-205ENST00000572809 ZNF790Q6PG37 636 aa9.87□□□□□ -0.83
NUP88-205ENST00000572809 ERICH6Q7L0X2 663 aa9.87□□□□□ -0.83
NUP88-205ENST00000572809 PNNQ9H307 717 aaKnown RBP9.87□□□□□ -0.83
NUP88-205ENST00000572809 CCDC87Q9NVE4 849 aa9.87□□□□□ -0.83
NUP88-205ENST00000572809 TRIM6-TRIM34B2RNG4 842 aa9.86□□□□□ -0.83
NUP88-205ENST00000572809 STARD3NLO95772 234 aa9.86□□□□□ -0.83
NUP88-205ENST00000572809 MMP10P09238 476 aa9.86□□□□□ -0.83
NUP88-205ENST00000572809 ZEB1P37275 1124 aaPredicted RBP9.86□□□□□ -0.83
NUP88-205ENST00000572809 PDIA6Q15084 440 aa9.86□□□□□ -0.83
NUP88-205ENST00000572809 RBM26Q5T8P6 1007 aaKnown RBP9.86□□□□□ -0.83
NUP88-205ENST00000572809 GPIHBP1Q8IV16 184 aa9.86□□□□□ -0.83
NUP88-205ENST00000572809 KRI1Q8N9T8 703 aaKnown RBP9.86□□□□□ -0.83
NUP88-205ENST00000572809 LRCH3Q96II8 777 aa9.86□□□□□ -0.83
NUP88-205ENST00000572809 ZNF496Q96IT1 587 aaPredicted RBP9.86□□□□□ -0.83
NUP88-205ENST00000572809 TEX13AQ9BXU3 409 aaPredicted RBP9.86□□□□□ -0.83
NUP88-205ENST00000572809 MRC1P22897 1456 aa9.85□□□□□ -0.83
NUP88-205ENST00000572809 COL5A3P25940 1745 aaPredicted RBP9.85□□□□□ -0.83
NUP88-205ENST00000572809 MYH14Q7Z406 1995 aaKnown RBP9.85□□□□□ -0.83
NUP88-205ENST00000572809 GRIN3BO60391 1043 aa9.85□□□□□ -0.83
NUP88-205ENST00000572809 ZPR1O75312 459 aa9.85□□□□□ -0.83
NUP88-205ENST00000572809 BRPF1P55201 1214 aaPredicted RBP9.85□□□□□ -0.83
NUP88-205ENST00000572809 MCM10Q7L590 875 aa9.85□□□□□ -0.83
NUP88-205ENST00000572809 FMNL2Q96PY5 1086 aa9.85□□□□□ -0.83
NUP88-205ENST00000572809 SRP68Q9UHB9 627 aaKnown RBP9.85□□□□□ -0.83
NUP88-205ENST00000572809 PARP3Q9Y6F1 533 aa9.85□□□□□ -0.83
NUP88-205ENST00000572809 ADAMTS7Q9UKP4 1686 aa9.85□□□□□ -0.83
NUP88-205ENST00000572809 CEMIPQ8WUJ3 1361 aa9.85□□□□□ -0.83
NUP88-205ENST00000572809 VIRMAQ69YN4 1812 aaKnown RBP9.84□□□□□ -0.83
NUP88-205ENST00000572809 KCNQ3O43525 872 aa9.84□□□□□ -0.83
NUP88-205ENST00000572809 CANXP27824 592 aaKnown RBP9.84□□□□□ -0.83
NUP88-205ENST00000572809 DCTN1Q14203 1278 aa9.84□□□□□ -0.83
NUP88-205ENST00000572809 TAF7Q15545 349 aaPredicted RBP9.84□□□□□ -0.83
NUP88-205ENST00000572809 NEUROD2Q15784 382 aa9.84□□□□□ -0.83
NUP88-205ENST00000572809 PLEKHF1Q96S99 279 aa9.84□□□□□ -0.83
NUP88-205ENST00000572809 ZBTB1Q9Y2K1 713 aa9.84□□□□□ -0.83
NUP88-205ENST00000572809 SOS1Q07889 1333 aaPredicted RBP9.83□□□□□ -0.84
NUP88-205ENST00000572809 USP42Q9H9J4 1324 aaKnown RBP9.83□□□□□ -0.84
NUP88-205ENST00000572809 KCPQ6ZWJ8 1503 aa9.83□□□□□ -0.84
NUP88-205ENST00000572809 TJP1Q07157 1748 aa9.83□□□□□ -0.84
NUP88-205ENST00000572809 YBX3P16989 372 aaKnown RBP eCLIP9.83□□□□□ -0.84
NUP88-205ENST00000572809 TGFB2P61812 414 aa9.83□□□□□ -0.84
NUP88-205ENST00000572809 USPL1Q5W0Q7 1092 aa9.83□□□□□ -0.84
NUP88-205ENST00000572809 EPAS1Q99814 870 aa9.83□□□□□ -0.84
NUP88-205ENST00000572809 NARFQ9UHQ1 456 aa9.83□□□□□ -0.84
NUP88-205ENST00000572809 HEG1Q9ULI3 1381 aa9.83□□□□□ -0.84
NUP88-205ENST00000572809 MYBBP1AQ9BQG0 1328 aaKnown RBP9.82□□□□□ -0.84
NUP88-205ENST00000572809 A0A087WZG4 1122 aa9.82□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms