RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 ADAMTS8Q9UP79 889 aa10.61□□□□□ -0.71
VPS53-214ENST00000572607 RRP7AQ9Y3A4 280 aaKnown RBP10.61□□□□□ -0.71
VPS53-214ENST00000572607 USP16Q9Y5T5 823 aa10.61□□□□□ -0.71
VPS53-214ENST00000572607 A1BGP04217 495 aa10.6□□□□□ -0.71
VPS53-214ENST00000572607 NMRK2Q9NPI5 230 aa10.6□□□□□ -0.71
VPS53-214ENST00000572607 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.59□□□□□ -0.71
VPS53-214ENST00000572607 POLRMTO00411 1230 aaKnown RBP10.59□□□□□ -0.71
VPS53-214ENST00000572607 KCNA3P22001 575 aa10.59□□□□□ -0.71
VPS53-214ENST00000572607 APLP1P51693 650 aa10.59□□□□□ -0.71
VPS53-214ENST00000572607 DDR1Q08345 913 aa10.59□□□□□ -0.71
VPS53-214ENST00000572607 NFIXQ14938 502 aa10.59□□□□□ -0.71
VPS53-214ENST00000572607 BICDL1Q6ZP65 573 aa10.59□□□□□ -0.71
VPS53-214ENST00000572607 DZIP3Q86Y13 1208 aaKnown RBP10.59□□□□□ -0.71
VPS53-214ENST00000572607 ZFP91Q96JP5 570 aaPredicted RBP10.59□□□□□ -0.71
VPS53-214ENST00000572607 BABAM1Q9NWV8 329 aa10.59□□□□□ -0.71
VPS53-214ENST00000572607 TBC1D2BQ9UPU7 963 aa10.59□□□□□ -0.71
VPS53-214ENST00000572607 ZNF652Q9Y2D9 606 aa10.59□□□□□ -0.71
VPS53-214ENST00000572607 PRAMEF22A3QJZ6 481 aa10.58□□□□□ -0.72
VPS53-214ENST00000572607 NPHP1O15259 732 aa10.58□□□□□ -0.72
VPS53-214ENST00000572607 TOMM70O94826 608 aa10.58□□□□□ -0.72
VPS53-214ENST00000572607 TM4SF1P30408 202 aa10.58□□□□□ -0.72
VPS53-214ENST00000572607 EIF4A1P60842 406 aaKnown RBP10.58□□□□□ -0.72
VPS53-214ENST00000572607 HTRA3P83110 453 aa10.58□□□□□ -0.72
VPS53-214ENST00000572607 TNRC6CQ9HCJ0 1690 aaKnown RBP10.57□□□□□ -0.72
VPS53-214ENST00000572607 A0A0G2JLW4 131 aa10.57□□□□□ -0.72
VPS53-214ENST00000572607 SERPINB2P05120 415 aa10.57□□□□□ -0.72
VPS53-214ENST00000572607 HOXB1P14653 301 aaPredicted RBP10.57□□□□□ -0.72
VPS53-214ENST00000572607 PIP4K2AP48426 406 aaPredicted RBP10.57□□□□□ -0.72
VPS53-214ENST00000572607 CALD1Q05682 793 aaKnown RBP10.57□□□□□ -0.72
VPS53-214ENST00000572607 DOK7Q18PE1 504 aa10.57□□□□□ -0.72
VPS53-214ENST00000572607 BCL2L12Q9HB09 334 aa10.57□□□□□ -0.72
VPS53-214ENST00000572607 LAS1LQ9Y4W2 734 aaKnown RBP10.57□□□□□ -0.72
VPS53-214ENST00000572607 CARMIL3Q8ND23 1372 aa10.56□□□□□ -0.72
VPS53-214ENST00000572607 CCDC88AQ3V6T2 1871 aa10.56□□□□□ -0.72
VPS53-214ENST00000572607 DPEP1P16444 411 aa10.56□□□□□ -0.72
VPS53-214ENST00000572607 COL13A1Q5TAT6 717 aaPredicted RBP10.56□□□□□ -0.72
VPS53-214ENST00000572607 TBC1D9BQ66K14 1250 aa10.56□□□□□ -0.72
VPS53-214ENST00000572607 KIF6Q6ZMV9 814 aa10.56□□□□□ -0.72
VPS53-214ENST00000572607 MICALL2Q8IY33 904 aa10.56□□□□□ -0.72
VPS53-214ENST00000572607 ZNF710Q8N1W2 664 aa10.56□□□□□ -0.72
VPS53-214ENST00000572607 JMYQ8N9B5 988 aa10.56□□□□□ -0.72
VPS53-214ENST00000572607 SETDB2Q96T68 719 aa10.56□□□□□ -0.72
VPS53-214ENST00000572607 KRTAP3-3Q9BYR6 98 aa10.56□□□□□ -0.72
VPS53-214ENST00000572607 KRTAP3-2Q9BYR7 98 aa10.56□□□□□ -0.72
VPS53-214ENST00000572607 MRS2Q9HD23 443 aa10.56□□□□□ -0.72
VPS53-214ENST00000572607 PIM2Q9P1W9 311 aa10.56□□□□□ -0.72
VPS53-214ENST00000572607 BCS1LQ9Y276 419 aa10.56□□□□□ -0.72
VPS53-214ENST00000572607 AFDNP55196 1824 aaKnown RBP10.56□□□□□ -0.72
VPS53-214ENST00000572607 ERBB4Q15303 1308 aa10.56□□□□□ -0.72
VPS53-214ENST00000572607 DLEC1Q9Y238 1755 aa10.55□□□□□ -0.72
VPS53-214ENST00000572607 DLG5Q8TDM6 1919 aa10.55□□□□□ -0.72
VPS53-214ENST00000572607 RGL2O15211 777 aa10.55□□□□□ -0.72
VPS53-214ENST00000572607 CAMTA2O94983 1202 aa10.55□□□□□ -0.72
VPS53-214ENST00000572607 ST5P78524 1137 aa10.55□□□□□ -0.72
VPS53-214ENST00000572607 CLEC4GQ6UXB4 293 aa10.55□□□□□ -0.72
VPS53-214ENST00000572607 NGEFQ8N5V2 710 aa10.55□□□□□ -0.72
VPS53-214ENST00000572607 KDM3BQ7LBC6 1761 aa10.54□□□□□ -0.72
VPS53-214ENST00000572607 SCN7AQ01118 1682 aa10.54□□□□□ -0.72
VPS53-214ENST00000572607 NBPF26B4DH59 902 aa10.54□□□□□ -0.72
VPS53-214ENST00000572607 APAF1O14727 1248 aa10.54□□□□□ -0.72
VPS53-214ENST00000572607 MYL6BP14649 208 aa10.54□□□□□ -0.72
VPS53-214ENST00000572607 EIF2S2P20042 333 aaKnown RBP10.54□□□□□ -0.72
VPS53-214ENST00000572607 DALRD3Q5D0E6 543 aaKnown RBP10.54□□□□□ -0.72
VPS53-214ENST00000572607 NBPF10Q6P3W6 841 aaKnown RBP10.54□□□□□ -0.72
VPS53-214ENST00000572607 NBPF15Q8N660 670 aa10.54□□□□□ -0.72
VPS53-214ENST00000572607 CNBD1Q8NA66 436 aa10.54□□□□□ -0.72
VPS53-214ENST00000572607 RBM46Q8TBY0 533 aaKnown RBP10.54□□□□□ -0.72
VPS53-214ENST00000572607 KLRG1Q96E93 195 aa10.54□□□□□ -0.72
VPS53-214ENST00000572607 MS4A4AQ96JQ5 239 aa10.54□□□□□ -0.72
VPS53-214ENST00000572607 NRXN2Q9P2S2 1712 aa10.54□□□□□ -0.72
VPS53-214ENST00000572607 PDZRN3Q9UPQ7 1066 aa10.54□□□□□ -0.72
VPS53-214ENST00000572607 LAMB4A4D0S4 1761 aa10.53□□□□□ -0.72
VPS53-214ENST00000572607 H0YIN7 160 aa10.53□□□□□ -0.72
VPS53-214ENST00000572607 CHL1O00533 1208 aa10.53□□□□□ -0.72
VPS53-214ENST00000572607 CHRNA5P30532 468 aa10.53□□□□□ -0.72
VPS53-214ENST00000572607 PDE6BP35913 854 aa10.53□□□□□ -0.72
VPS53-214ENST00000572607 NBPF5PQ86XG9 351 aaPredicted RBP10.53□□□□□ -0.72
VPS53-214ENST00000572607 C2CD5Q86YS7 1000 aa10.53□□□□□ -0.72
VPS53-214ENST00000572607 CFAP44Q96MT7 982 aa10.53□□□□□ -0.72
VPS53-214ENST00000572607 TIAM2Q8IVF5 1701 aa10.53□□□□□ -0.72
VPS53-214ENST00000572607 GTF2E1P29083 439 aaPredicted RBP10.52□□□□□ -0.73
VPS53-214ENST00000572607 PRELPP51888 382 aa10.52□□□□□ -0.73
VPS53-214ENST00000572607 GNAI1P63096 354 aa10.52□□□□□ -0.73
VPS53-214ENST00000572607 C9orf131Q5VYM1 1079 aa10.52□□□□□ -0.73
VPS53-214ENST00000572607 PRR5LQ6MZQ0 368 aa10.52□□□□□ -0.73
VPS53-214ENST00000572607 TMEM92Q6UXU6 159 aa10.52□□□□□ -0.73
VPS53-214ENST00000572607 ARHGAP27Q6ZUM4 889 aa10.52□□□□□ -0.73
VPS53-214ENST00000572607 BRIP1Q9BX63 1249 aa10.52□□□□□ -0.73
VPS53-214ENST00000572607 NIP7Q9Y221 180 aaKnown RBP eCLIP10.52□□□□□ -0.73
VPS53-214ENST00000572607 ERVV-1B6SEH8 477 aa10.51□□□□□ -0.73
VPS53-214ENST00000572607 RIMBP2O15034 1052 aa10.51□□□□□ -0.73
VPS53-214ENST00000572607 HOXB7P09629 217 aa10.51□□□□□ -0.73
VPS53-214ENST00000572607 TPTE2Q6XPS3 522 aa10.51□□□□□ -0.73
VPS53-214ENST00000572607 IFT57Q9NWB7 429 aa10.51□□□□□ -0.73
VPS53-214ENST00000572607 TAOK2Q9UL54 1235 aa10.51□□□□□ -0.73
VPS53-214ENST00000572607 MAP3K15Q6ZN16 1313 aa10.51□□□□□ -0.73
VPS53-214ENST00000572607 CCDC184Q52MB2 194 aa10.5□□□□□ -0.73
VPS53-214ENST00000572607 HDGFL1Q5TGJ6 251 aa10.5□□□□□ -0.73
VPS53-214ENST00000572607 TTLL6Q8N841 843 aa10.5□□□□□ -0.73
VPS53-214ENST00000572607 NECTIN2Q92692 538 aa10.5□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms