RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 GNASQ5JWF2 1037 aa8.79□□□□□ -1
VPS53-212ENST00000572259 PHLDB3Q6NSJ2 640 aa8.79□□□□□ -1
VPS53-212ENST00000572259 C1orf216Q8TAB5 229 aa8.79□□□□□ -1
VPS53-212ENST00000572259 CABP1Q9NZU7 370 aa8.79□□□□□ -1
VPS53-212ENST00000572259 ABCC1P33527 1531 aa8.79□□□□□ -1
VPS53-212ENST00000572259 ARHGEF40Q8TER5 1519 aa8.79□□□□□ -1
VPS53-212ENST00000572259 MLH3Q9UHC1 1453 aa8.78□□□□□ -1
VPS53-212ENST00000572259 BMP1P13497 986 aa8.78□□□□□ -1
VPS53-212ENST00000572259 CTSOP43234 321 aaPredicted RBP8.78□□□□□ -1
VPS53-212ENST00000572259 PSMA6P60900 246 aaKnown RBP8.78□□□□□ -1
VPS53-212ENST00000572259 PPARGC1BQ86YN6 1023 aaKnown RBP8.78□□□□□ -1
VPS53-212ENST00000572259 MKNK1Q9BUB5 465 aa8.78□□□□□ -1
VPS53-212ENST00000572259 NIFKQ9BYG3 293 aaKnown RBP8.78□□□□□ -1
VPS53-212ENST00000572259 ZNF232Q9UNY5 417 aa8.78□□□□□ -1
VPS53-212ENST00000572259 IVNS1ABPQ9Y6Y0 642 aa8.78□□□□□ -1
VPS53-212ENST00000572259 HECW2Q9P2P5 1572 aa8.78□□□□□ -1
VPS53-212ENST00000572259 PTCD1O75127 700 aaKnown RBP8.77□□□□□ -1.01
VPS53-212ENST00000572259 FKBP5Q13451 457 aaPredicted RBP8.77□□□□□ -1.01
VPS53-212ENST00000572259 CCDC27Q2M243 656 aa8.77□□□□□ -1.01
VPS53-212ENST00000572259 TAS1R3Q7RTX0 852 aa8.77□□□□□ -1.01
VPS53-212ENST00000572259 CRIPAKQ8N1N5 446 aa8.77□□□□□ -1.01
VPS53-212ENST00000572259 GRIP2Q9C0E4 1043 aa8.77□□□□□ -1.01
VPS53-212ENST00000572259 C9orf84Q5VXU9 1444 aa8.77□□□□□ -1.01
VPS53-212ENST00000572259 YEATS2Q9ULM3 1422 aa8.77□□□□□ -1.01
VPS53-212ENST00000572259 TRAPPC8Q9Y2L5 1435 aa8.77□□□□□ -1.01
VPS53-212ENST00000572259 KDM5CP41229 1560 aa8.77□□□□□ -1.01
VPS53-212ENST00000572259 SAMD9LQ8IVG5 1584 aa8.77□□□□□ -1.01
VPS53-212ENST00000572259 SYCP2Q9BX26 1530 aa8.76□□□□□ -1.01
VPS53-212ENST00000572259 SERTM1A2A2V5 107 aa8.76□□□□□ -1.01
VPS53-212ENST00000572259 TTLL8A6PVC2 850 aa8.76□□□□□ -1.01
VPS53-212ENST00000572259 C21orf2O43822 256 aa8.76□□□□□ -1.01
VPS53-212ENST00000572259 MLECQ14165 292 aa8.76□□□□□ -1.01
VPS53-212ENST00000572259 RHBDD1Q8TEB9 315 aa8.76□□□□□ -1.01
VPS53-212ENST00000572259 IQSEC3Q9UPP2 1182 aaPredicted RBP8.76□□□□□ -1.01
VPS53-212ENST00000572259 USP3Q9Y6I4 520 aa8.76□□□□□ -1.01
VPS53-212ENST00000572259 ZNF644Q9H582 1327 aaPredicted RBP8.76□□□□□ -1.01
VPS53-212ENST00000572259 ARHGEF12Q9NZN5 1544 aa8.75□□□□□ -1.01
VPS53-212ENST00000572259 MIA2Q96PC5 1412 aa8.75□□□□□ -1.01
VPS53-212ENST00000572259 SCNN1AP37088 669 aa8.75□□□□□ -1.01
VPS53-212ENST00000572259 TEAD4Q15561 434 aa8.75□□□□□ -1.01
VPS53-212ENST00000572259 LYSMD3Q7Z3D4 306 aa8.75□□□□□ -1.01
VPS53-212ENST00000572259 PRICKLE2Q7Z3G6 844 aa8.75□□□□□ -1.01
VPS53-212ENST00000572259 TRIM46Q7Z4K8 759 aa8.75□□□□□ -1.01
VPS53-212ENST00000572259 STAG2Q8N3U4 1231 aa8.75□□□□□ -1.01
VPS53-212ENST00000572259 ZFP42Q96MM3 310 aa8.75□□□□□ -1.01
VPS53-212ENST00000572259 GNEQ9Y223 722 aaKnown RBP8.75□□□□□ -1.01
VPS53-212ENST00000572259 BCORL1Q5H9F3 1711 aa8.74□□□□□ -1.01
VPS53-212ENST00000572259 MYOM3Q5VTT5 1437 aa8.74□□□□□ -1.01
VPS53-212ENST00000572259 SETD1BQ9UPS6 1966 aaKnown RBP8.74□□□□□ -1.01
VPS53-212ENST00000572259 FIGNL2A6NMB9 653 aa8.74□□□□□ -1.01
VPS53-212ENST00000572259 ST8SIA5O15466 376 aa8.74□□□□□ -1.01
VPS53-212ENST00000572259 NOS2P35228 1153 aa8.74□□□□□ -1.01
VPS53-212ENST00000572259 NAA30Q147X3 362 aaPredicted RBP8.74□□□□□ -1.01
VPS53-212ENST00000572259 TXNDC2Q86VQ3 553 aa8.74□□□□□ -1.01
VPS53-212ENST00000572259 L3MBTL2Q969R5 705 aa8.74□□□□□ -1.01
VPS53-212ENST00000572259 C2orf49Q9BVC5 232 aaPredicted RBP8.74□□□□□ -1.01
VPS53-212ENST00000572259 AAASQ9NRG9 546 aa8.74□□□□□ -1.01
VPS53-212ENST00000572259 PARP3Q9Y6F1 533 aa8.74□□□□□ -1.01
VPS53-212ENST00000572259 RTEL1-TNFRSF6BF6WH68 1400 aa8.73□□□□□ -1.01
VPS53-212ENST00000572259 ABL1P00519 1130 aa8.73□□□□□ -1.01
VPS53-212ENST00000572259 CANXP27824 592 aaKnown RBP8.73□□□□□ -1.01
VPS53-212ENST00000572259 POU4F2Q12837 409 aa8.73□□□□□ -1.01
VPS53-212ENST00000572259 RNF217Q8TC41 542 aa8.73□□□□□ -1.01
VPS53-212ENST00000572259 COL26A1Q96A83 441 aa8.73□□□□□ -1.01
VPS53-212ENST00000572259 ATP13A2Q9NQ11 1180 aa8.73□□□□□ -1.01
VPS53-212ENST00000572259 SOS2Q07890 1332 aaPredicted RBP8.73□□□□□ -1.01
VPS53-212ENST00000572259 KIDINS220Q9ULH0 1771 aa8.73□□□□□ -1.01
VPS53-212ENST00000572259 ADAMTSL3P82987 1691 aa8.72□□□□□ -1.01
VPS53-212ENST00000572259 CAMSAP2Q08AD1 1489 aa8.72□□□□□ -1.01
VPS53-212ENST00000572259 CCDC141Q6ZP82 1450 aa8.72□□□□□ -1.01
VPS53-212ENST00000572259 PHKA2P46019 1235 aa8.72□□□□□ -1.01
VPS53-212ENST00000572259 PLA2G4AP47712 749 aa8.72□□□□□ -1.01
VPS53-212ENST00000572259 AIDAQ96BJ3 306 aa8.72□□□□□ -1.01
VPS53-212ENST00000572259 NGLY1Q96IV0 654 aa8.72□□□□□ -1.01
VPS53-212ENST00000572259 SEPT3Q9UH03 358 aa8.72□□□□□ -1.01
VPS53-212ENST00000572259 HCN4Q9Y3Q4 1203 aa8.72□□□□□ -1.01
VPS53-212ENST00000572259 REREQ9P2R6 1566 aa8.72□□□□□ -1.01
VPS53-212ENST00000572259 MBD5Q9P267 1494 aa8.71□□□□□ -1.01
VPS53-212ENST00000572259 ATP7AQ04656 1500 aa8.71□□□□□ -1.01
VPS53-212ENST00000572259 DIP2CQ9Y2E4 1556 aa8.71□□□□□ -1.02
VPS53-212ENST00000572259 SPATA31C2B4DYI2 1134 aa8.71□□□□□ -1.02
VPS53-212ENST00000572259 MAN1A2O60476 641 aa8.71□□□□□ -1.02
VPS53-212ENST00000572259 C4orf17Q53FE4 359 aa8.71□□□□□ -1.02
VPS53-212ENST00000572259 NBPF10Q6P3W6 841 aaKnown RBP8.71□□□□□ -1.02
VPS53-212ENST00000572259 Q6ZNB5 142 aa8.71□□□□□ -1.02
VPS53-212ENST00000572259 CAPN12Q6ZSI9 719 aa8.71□□□□□ -1.02
VPS53-212ENST00000572259 ZDHHC1Q8WTX9 485 aa8.71□□□□□ -1.02
VPS53-212ENST00000572259 GTF3C2Q8WUA4 911 aaPredicted RBP8.71□□□□□ -1.02
VPS53-212ENST00000572259 AGLP35573 1532 aa8.7□□□□□ -1.02
VPS53-212ENST00000572259 ARHGEF5Q12774 1597 aa8.7□□□□□ -1.02
VPS53-212ENST00000572259 ABCA6Q8N139 1617 aa8.7□□□□□ -1.02
VPS53-212ENST00000572259 ADGBQ8N7X0 1667 aa8.7□□□□□ -1.02
VPS53-212ENST00000572259 EML1O00423 815 aa8.7□□□□□ -1.02
VPS53-212ENST00000572259 SERPINB4P48594 390 aa8.7□□□□□ -1.02
VPS53-212ENST00000572259 NBPF1Q3BBV0 1214 aa8.7□□□□□ -1.02
VPS53-212ENST00000572259 IGSF5Q9NSI5 407 aa8.7□□□□□ -1.02
VPS53-212ENST00000572259 FER1L4A9Z1Z3 1794 aa8.7□□□□□ -1.02
VPS53-212ENST00000572259 A2MP01023 1474 aa8.7□□□□□ -1.02
VPS53-212ENST00000572259 PTPRMP28827 1452 aa8.7□□□□□ -1.02
VPS53-212ENST00000572259 RHOQP17081 205 aa8.69□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms