RNA–Protein interactions for RNA: ENST00000572083.5

CCDC40-206, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 816 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-206ENST00000572083 NUP98P52948 1817 aa26.44■■□□□ 1.82
CCDC40-206ENST00000572083 EIF6P56537 245 aaKnown RBP26.44■■□□□ 1.82
CCDC40-206ENST00000572083 TAF7Q15545 349 aaPredicted RBP26.44■■□□□ 1.82
CCDC40-206ENST00000572083 DDX21Q9NR30 783 aaKnown RBP eCLIP26.44■■□□□ 1.82
CCDC40-206ENST00000572083 LMOD1P29536 600 aaPredicted RBP26.43■■□□□ 1.82
CCDC40-206ENST00000572083 FMR1Q06787 632 aaKnown RBP eCLIP26.43■■□□□ 1.82
CCDC40-206ENST00000572083 RPGRQ92834 1020 aaKnown RBP26.43■■□□□ 1.82
CCDC40-206ENST00000572083 HTATSF1O43719 755 aaKnown RBP26.42■■□□□ 1.82
CCDC40-206ENST00000572083 GPTP24298 496 aa26.42■■□□□ 1.82
CCDC40-206ENST00000572083 PPP2R1AP30153 589 aa26.42■■□□□ 1.82
CCDC40-206ENST00000572083 MAP2K1Q02750 393 aaPredicted RBP26.42■■□□□ 1.82
CCDC40-206ENST00000572083 KDM3BQ7LBC6 1761 aa26.42■■□□□ 1.82
CCDC40-206ENST00000572083 THSD7BQ9C0I4 1608 aa26.42■■□□□ 1.82
CCDC40-206ENST00000572083 SCNN1DP51172 638 aa26.41■■□□□ 1.82
CCDC40-206ENST00000572083 MAP3K15Q6ZN16 1313 aa26.4■■□□□ 1.82
CCDC40-206ENST00000572083 UBN2Q6ZU65 1347 aa26.4■■□□□ 1.82
CCDC40-206ENST00000572083 ERVV-1B6SEH8 477 aa26.4■■□□□ 1.82
CCDC40-206ENST00000572083 TCERG1O14776 1098 aaKnown RBP26.4■■□□□ 1.82
CCDC40-206ENST00000572083 EPS15P42566 896 aa26.4■■□□□ 1.82
CCDC40-206ENST00000572083 CC2D2BQ6DHV5 1058 aa26.4■■□□□ 1.82
CCDC40-206ENST00000572083 TTLL7Q6ZT98 887 aa26.4■■□□□ 1.82
CCDC40-206ENST00000572083 PAXIP1Q6ZW49 1069 aaPredicted RBP26.4■■□□□ 1.82
CCDC40-206ENST00000572083 LARGE2Q8N3Y3 721 aa26.4■■□□□ 1.82
CCDC40-206ENST00000572083 ABHD8Q96I13 439 aa26.4■■□□□ 1.82
CCDC40-206ENST00000572083 RRP7AQ9Y3A4 280 aaKnown RBP26.4■■□□□ 1.82
CCDC40-206ENST00000572083 RIC1Q4ADV7 1423 aa26.39■■□□□ 1.82
CCDC40-206ENST00000572083 GRM1Q13255 1194 aa26.39■■□□□ 1.82
CCDC40-206ENST00000572083 KIF6Q6ZMV9 814 aa26.39■■□□□ 1.82
CCDC40-206ENST00000572083 ZBTB3Q9H5J0 574 aa26.39■■□□□ 1.82
CCDC40-206ENST00000572083 DLG5Q8TDM6 1919 aa26.38■■□□□ 1.81
CCDC40-206ENST00000572083 MYL6BP14649 208 aa26.38■■□□□ 1.81
CCDC40-206ENST00000572083 HOXA10P31260 410 aaPredicted RBP26.38■■□□□ 1.81
CCDC40-206ENST00000572083 IBTKQ9P2D0 1353 aaPredicted RBP26.37■■□□□ 1.81
CCDC40-206ENST00000572083 PPEF1O14829 653 aaPredicted RBP26.37■■□□□ 1.81
CCDC40-206ENST00000572083 CAPNS2Q96L46 248 aa26.37■■□□□ 1.81
CCDC40-206ENST00000572083 TRAF5O00463 557 aa26.36■■□□□ 1.81
CCDC40-206ENST00000572083 CYP4F22Q6NT55 531 aa26.36■■□□□ 1.81
CCDC40-206ENST00000572083 SUSD4Q5VX71 490 aa26.35■■□□□ 1.81
CCDC40-206ENST00000572083 C3orf67Q6ZVT6 689 aa26.35■■□□□ 1.81
CCDC40-206ENST00000572083 RBM17Q96I25 401 aaKnown RBP26.35■■□□□ 1.81
CCDC40-206ENST00000572083 TRPM7Q96QT4 1865 aa26.34■■□□□ 1.81
CCDC40-206ENST00000572083 USP50Q70EL3 339 aaPredicted RBP26.34■■□□□ 1.81
CCDC40-206ENST00000572083 NIM1KQ8IY84 436 aa26.34■■□□□ 1.81
CCDC40-206ENST00000572083 NTSR2O95665 410 aa26.33■■□□□ 1.81
CCDC40-206ENST00000572083 EIF4A1P60842 406 aaKnown RBP26.33■■□□□ 1.81
CCDC40-206ENST00000572083 FAM161AQ3B820 660 aa26.33■■□□□ 1.81
CCDC40-206ENST00000572083 GRIPAP1Q4V328 841 aa26.33■■□□□ 1.81
CCDC40-206ENST00000572083 CST9Q5W186 159 aa26.33■■□□□ 1.81
CCDC40-206ENST00000572083 CRAMP1Q96RY5 1269 aa26.33■■□□□ 1.81
CCDC40-206ENST00000572083 PPIP5K2O43314 1243 aa26.32■■□□□ 1.8
CCDC40-206ENST00000572083 ECE1P42892 770 aa26.32■■□□□ 1.8
CCDC40-206ENST00000572083 AOC3Q16853 763 aa26.32■■□□□ 1.8
CCDC40-206ENST00000572083 PNISRQ8TF01 805 aaKnown RBP26.32■■□□□ 1.8
CCDC40-206ENST00000572083 GPR101Q96P66 508 aaPredicted RBP26.32■■□□□ 1.8
CCDC40-206ENST00000572083 BEGAINQ9BUH8 593 aa26.32■■□□□ 1.8
CCDC40-206ENST00000572083 ZNF34Q8IZ26 560 aa26.31■■□□□ 1.8
CCDC40-206ENST00000572083 THUMPD2Q9BTF0 503 aaKnown RBP26.31■■□□□ 1.8
CCDC40-206ENST00000572083 TLL2Q9Y6L7 1015 aa26.3■■□□□ 1.8
CCDC40-206ENST00000572083 TSKSQ9UJT2 592 aa26.29■■□□□ 1.8
CCDC40-206ENST00000572083 AOC2O75106 756 aa26.28■■□□□ 1.8
CCDC40-206ENST00000572083 NEFMP07197 916 aa26.28■■□□□ 1.8
CCDC40-206ENST00000572083 GIGYF2Q6Y7W6 1299 aaKnown RBP26.28■■□□□ 1.8
CCDC40-206ENST00000572083 ADARB2Q9NS39 739 aaKnown RBP26.28■■□□□ 1.8
CCDC40-206ENST00000572083 GPRC5DQ9NZD1 345 aa26.28■■□□□ 1.8
CCDC40-206ENST00000572083 PPP1R42Q7Z4L9 355 aa26.27■■□□□ 1.8
CCDC40-206ENST00000572083 NLRP3Q96P20 1036 aa26.26■■□□□ 1.79
CCDC40-206ENST00000572083 TMX4Q9H1E5 349 aaPredicted RBP26.26■■□□□ 1.79
CCDC40-206ENST00000572083 ATP6V0A2Q9Y487 856 aa26.26■■□□□ 1.79
CCDC40-206ENST00000572083 ABCC4O15439 1325 aa26.25■■□□□ 1.79
CCDC40-206ENST00000572083 CCDC85CA6NKD9 419 aa26.25■■□□□ 1.79
CCDC40-206ENST00000572083 CELF2O95319 508 aaKnown RBP26.24■■□□□ 1.79
CCDC40-206ENST00000572083 GMPSP49915 693 aaPredicted RBP26.24■■□□□ 1.79
CCDC40-206ENST00000572083 CXCL9Q07325 125 aa26.24■■□□□ 1.79
CCDC40-206ENST00000572083 NFE2L2Q16236 605 aa26.24■■□□□ 1.79
CCDC40-206ENST00000572083 PARP10Q53GL7 1025 aa26.24■■□□□ 1.79
CCDC40-206ENST00000572083 LAMB2P55268 1798 aa26.23■■□□□ 1.79
CCDC40-206ENST00000572083 SAPCD2Q86UD0 394 aa26.23■■□□□ 1.79
CCDC40-206ENST00000572083 PLEKHF1Q96S99 279 aa26.23■■□□□ 1.79
CCDC40-206ENST00000572083 GLIS2Q9BZE0 524 aaPredicted RBP26.23■■□□□ 1.79
CCDC40-206ENST00000572083 ZNRF3Q9ULT6 936 aa26.23■■□□□ 1.79
CCDC40-206ENST00000572083 ERBB4Q15303 1308 aa26.22■■□□□ 1.79
CCDC40-206ENST00000572083 UTP14AQ9BVJ6 771 aaKnown RBP26.22■■□□□ 1.79
CCDC40-206ENST00000572083 MAP2K2P36507 400 aa26.21■■□□□ 1.79
CCDC40-206ENST00000572083 VPS33BQ9H267 617 aa26.21■■□□□ 1.79
CCDC40-206ENST00000572083 SLC34A2O95436 690 aa26.2■■□□□ 1.78
CCDC40-206ENST00000572083 ANXA1P04083 346 aa26.2■■□□□ 1.78
CCDC40-206ENST00000572083 DPP8Q6V1X1 898 aaPredicted RBP26.2■■□□□ 1.78
CCDC40-206ENST00000572083 LRP10Q7Z4F1 713 aa26.2■■□□□ 1.78
CCDC40-206ENST00000572083 SUPT20HQ8NEM7 779 aa26.2■■□□□ 1.78
CCDC40-206ENST00000572083 RTFDC1Q9BY42 306 aaPredicted RBP26.2■■□□□ 1.78
CCDC40-206ENST00000572083 ZNF408Q9H9D4 720 aa26.2■■□□□ 1.78
CCDC40-206ENST00000572083 ANKRD36CQ5JPF3 1778 aa26.2■■□□□ 1.78
CCDC40-206ENST00000572083 EIF2S2P20042 333 aaKnown RBP26.19■■□□□ 1.78
CCDC40-206ENST00000572083 PDIA6Q15084 440 aa26.19■■□□□ 1.78
CCDC40-206ENST00000572083 PROSER3Q2NL68 480 aa26.19■■□□□ 1.78
CCDC40-206ENST00000572083 TSPYL4Q9UJ04 414 aa26.19■■□□□ 1.78
CCDC40-206ENST00000572083 RAD17O75943 681 aa26.18■■□□□ 1.78
CCDC40-206ENST00000572083 MLLT1Q03111 559 aaPredicted RBP26.18■■□□□ 1.78
CCDC40-206ENST00000572083 SLC10A5Q5PT55 438 aa26.18■■□□□ 1.78
CCDC40-206ENST00000572083 CIAPIN1Q6FI81 312 aa26.18■■□□□ 1.78
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms