RNA–Protein interactions for RNA: ENST00000570758.1

CHD3-212, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 3

Gene CHD3, Length 174 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-212ENST00000570758 SYNE4Q8N205 404 aa7.02□□□□□ -1.29
CHD3-212ENST00000570758 TSPYL6Q8N831 410 aa7.02□□□□□ -1.29
CHD3-212ENST00000570758 PLBD2Q8NHP8 589 aa7.02□□□□□ -1.29
CHD3-212ENST00000570758 TSR2Q969E8 191 aaKnown RBP7.02□□□□□ -1.29
CHD3-212ENST00000570758 ZNF428Q96B54 188 aa7.02□□□□□ -1.29
CHD3-212ENST00000570758 UTP14AQ9BVJ6 771 aaKnown RBP7.02□□□□□ -1.29
CHD3-212ENST00000570758 DBF4Q9UBU7 674 aaPredicted RBP7.02□□□□□ -1.29
CHD3-212ENST00000570758 SALL2Q9Y467 1007 aaPredicted RBP7.02□□□□□ -1.29
CHD3-212ENST00000570758 FER1L6Q2WGJ9 1857 aa7.02□□□□□ -1.29
CHD3-212ENST00000570758 SNED1Q8TER0 1413 aa7.01□□□□□ -1.29
CHD3-212ENST00000570758 CCDC88AQ3V6T2 1871 aa7.01□□□□□ -1.29
CHD3-212ENST00000570758 ANKRD36CQ5JPF3 1778 aa7.01□□□□□ -1.29
CHD3-212ENST00000570758 HCLS1P14317 486 aaPredicted RBP7.01□□□□□ -1.29
CHD3-212ENST00000570758 CCDC93Q567U6 631 aa7.01□□□□□ -1.29
CHD3-212ENST00000570758 HSP90AB3PQ58FF7 597 aa7.01□□□□□ -1.29
CHD3-212ENST00000570758 SOGA3Q5TF21 947 aa7.01□□□□□ -1.29
CHD3-212ENST00000570758 RPGRQ92834 1020 aaKnown RBP7.01□□□□□ -1.29
CHD3-212ENST00000570758 ISCA1Q9BUE6 129 aa7.01□□□□□ -1.29
CHD3-212ENST00000570758 TAOK3Q9H2K8 898 aa7.01□□□□□ -1.29
CHD3-212ENST00000570758 PHAXQ9H814 394 aaKnown RBP7.01□□□□□ -1.29
CHD3-212ENST00000570758 RRAGCQ9HB90 399 aa7.01□□□□□ -1.29
CHD3-212ENST00000570758 HYPKQ9NX55 129 aa7.01□□□□□ -1.29
CHD3-212ENST00000570758 TIAM2Q8IVF5 1701 aa7.01□□□□□ -1.29
CHD3-212ENST00000570758 KDM2BQ8NHM5 1336 aa7.01□□□□□ -1.29
CHD3-212ENST00000570758 ZC3H4Q9UPT8 1303 aaKnown RBP7.01□□□□□ -1.29
CHD3-212ENST00000570758 GLTPD2A6NH11 291 aa7□□□□□ -1.29
CHD3-212ENST00000570758 ATP5J2-PTCD1G3V325 749 aa7□□□□□ -1.29
CHD3-212ENST00000570758 TCERG1O14776 1098 aaKnown RBP7□□□□□ -1.29
CHD3-212ENST00000570758 ALDH1B1P30837 517 aa7□□□□□ -1.29
CHD3-212ENST00000570758 FKBP4Q02790 459 aaKnown RBP eCLIP7□□□□□ -1.29
CHD3-212ENST00000570758 NCBP3Q53F19 620 aaKnown RBP7□□□□□ -1.29
CHD3-212ENST00000570758 ANKRD13DQ6ZTN6 518 aa7□□□□□ -1.29
CHD3-212ENST00000570758 FAM9BQ8IZU0 186 aa7□□□□□ -1.29
CHD3-212ENST00000570758 RBM17Q96I25 401 aaKnown RBP7□□□□□ -1.29
CHD3-212ENST00000570758 NLRP3Q96P20 1036 aa7□□□□□ -1.29
CHD3-212ENST00000570758 CRAMP1Q96RY5 1269 aa7□□□□□ -1.29
CHD3-212ENST00000570758 ZNF277Q9NRM2 450 aaPredicted RBP7□□□□□ -1.29
CHD3-212ENST00000570758 IL16Q14005 1332 aa7□□□□□ -1.29
CHD3-212ENST00000570758 RNF123Q5XPI4 1314 aa7□□□□□ -1.29
CHD3-212ENST00000570758 SH3TC1Q8TE82 1336 aa7□□□□□ -1.29
CHD3-212ENST00000570758 POTECB2RU33 542 aa6.99□□□□□ -1.29
CHD3-212ENST00000570758 TOMM70O94826 608 aa6.99□□□□□ -1.29
CHD3-212ENST00000570758 HSPA6P17066 643 aa6.99□□□□□ -1.29
CHD3-212ENST00000570758 GOLGA2Q08379 1002 aa6.99□□□□□ -1.29
CHD3-212ENST00000570758 CCDC30Q5VVM6 783 aa6.99□□□□□ -1.29
CHD3-212ENST00000570758 RIC3Q7Z5B4 369 aa6.99□□□□□ -1.29
CHD3-212ENST00000570758 RTKN2Q8IZC4 609 aa6.99□□□□□ -1.29
CHD3-212ENST00000570758 FAM89AQ96GI7 184 aa6.99□□□□□ -1.29
CHD3-212ENST00000570758 SPINK5Q9NQ38 1064 aaPredicted RBP6.99□□□□□ -1.29
CHD3-212ENST00000570758 TRMT112Q9UI30 125 aaKnown RBP6.99□□□□□ -1.29
CHD3-212ENST00000570758 DICER1Q9UPY3 1922 aaKnown RBP6.99□□□□□ -1.29
CHD3-212ENST00000570758 ABCC4O15439 1325 aa6.99□□□□□ -1.29
CHD3-212ENST00000570758 FANCIQ9NVI1 1328 aa6.99□□□□□ -1.29
CHD3-212ENST00000570758 LAMB2P55268 1798 aa6.98□□□□□ -1.29
CHD3-212ENST00000570758 COL4A5P29400 1685 aa6.98□□□□□ -1.29
CHD3-212ENST00000570758 PPEF1O14829 653 aaPredicted RBP6.98□□□□□ -1.29
CHD3-212ENST00000570758 DDNO94850 711 aaPredicted RBP6.98□□□□□ -1.29
CHD3-212ENST00000570758 IARSP41252 1262 aaKnown RBP6.98□□□□□ -1.29
CHD3-212ENST00000570758 TRIM28Q13263 835 aaKnown RBP6.98□□□□□ -1.29
CHD3-212ENST00000570758 TWISTNBQ3B726 338 aaPredicted RBP6.98□□□□□ -1.29
CHD3-212ENST00000570758 RTL5Q5HYW3 569 aaPredicted RBP6.98□□□□□ -1.29
CHD3-212ENST00000570758 G2E3Q7L622 706 aa6.98□□□□□ -1.29
CHD3-212ENST00000570758 WDR63Q8IWG1 891 aa6.98□□□□□ -1.29
CHD3-212ENST00000570758 RBM46Q8TBY0 533 aaKnown RBP6.98□□□□□ -1.29
CHD3-212ENST00000570758 MYD88Q99836 296 aa6.98□□□□□ -1.29
CHD3-212ENST00000570758 ZNF541Q9H0D2 1346 aa6.98□□□□□ -1.29
CHD3-212ENST00000570758 COL4A1P02462 1669 aa6.97□□□□□ -1.29
CHD3-212ENST00000570758 VAMP4O75379 141 aa6.97□□□□□ -1.29
CHD3-212ENST00000570758 VEGFAP15692 232 aaPredicted RBP6.97□□□□□ -1.29
CHD3-212ENST00000570758 GRAPQ13588 217 aa6.97□□□□□ -1.29
CHD3-212ENST00000570758 CC2D2BQ6DHV5 1058 aa6.97□□□□□ -1.29
CHD3-212ENST00000570758 DDX60Q8IY21 1712 aaKnown RBP6.97□□□□□ -1.29
CHD3-212ENST00000570758 C16orf71Q8IYS4 520 aaPredicted RBP6.97□□□□□ -1.29
CHD3-212ENST00000570758 GRAPLQ8TC17 118 aaPredicted RBP6.97□□□□□ -1.29
CHD3-212ENST00000570758 JARID2Q92833 1246 aaPredicted RBP6.97□□□□□ -1.29
CHD3-212ENST00000570758 WDR90Q96KV7 1748 aa6.97□□□□□ -1.29
CHD3-212ENST00000570758 PSMD1Q99460 953 aa6.97□□□□□ -1.29
CHD3-212ENST00000570758 METTL22Q9BUU2 404 aaPredicted RBP6.97□□□□□ -1.29
CHD3-212ENST00000570758 ATP6V0A2Q9Y487 856 aa6.97□□□□□ -1.29
CHD3-212ENST00000570758 PI4KAP2A4QPH2 592 aa6.96□□□□□ -1.3
CHD3-212ENST00000570758 FZD9O00144 591 aa6.96□□□□□ -1.3
CHD3-212ENST00000570758 IRS4O14654 1257 aaPredicted RBP6.96□□□□□ -1.3
CHD3-212ENST00000570758 BBOX1O75936 387 aa6.96□□□□□ -1.3
CHD3-212ENST00000570758 SLC4A2P04920 1241 aa6.96□□□□□ -1.3
CHD3-212ENST00000570758 IGKV5-2P06315 115 aa6.96□□□□□ -1.3
CHD3-212ENST00000570758 EXOSC9Q06265 439 aaKnown RBP6.96□□□□□ -1.3
CHD3-212ENST00000570758 FSTL1Q12841 308 aa6.96□□□□□ -1.3
CHD3-212ENST00000570758 SF3B3Q15393 1217 aaKnown RBP6.96□□□□□ -1.3
CHD3-212ENST00000570758 DPY19L2Q6NUT2 758 aa6.96□□□□□ -1.3
CHD3-212ENST00000570758 KSR2Q6VAB6 950 aa6.96□□□□□ -1.3
CHD3-212ENST00000570758 DDX46Q7L014 1031 aaKnown RBP6.96□□□□□ -1.3
CHD3-212ENST00000570758 SP8Q8IXZ3 490 aa6.96□□□□□ -1.3
CHD3-212ENST00000570758 PI4KAP1Q8N8J0 262 aa6.96□□□□□ -1.3
CHD3-212ENST00000570758 ZBTB38Q8NAP3 1195 aaPredicted RBP6.96□□□□□ -1.3
CHD3-212ENST00000570758 CCDC191Q8NCU4 936 aa6.96□□□□□ -1.3
CHD3-212ENST00000570758 STK31Q9BXU1 1019 aa6.96□□□□□ -1.3
CHD3-212ENST00000570758 MAP3K2Q9Y2U5 619 aa6.96□□□□□ -1.3
CHD3-212ENST00000570758 TAF1P21675 1872 aa6.96□□□□□ -1.3
CHD3-212ENST00000570758 DDX58O95786 925 aaKnown RBP6.95□□□□□ -1.3
CHD3-212ENST00000570758 PCCAP05165 728 aaPredicted RBP6.95□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms