RNA–Protein interactions for RNA: ENST00000570359.1

VPS53-206, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 2,781 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-206ENST00000570359 NMIQ13287 307 aaPredicted RBP12.01□□□□□ -0.49
VPS53-206ENST00000570359 CARD10Q9BWT7 1032 aa12.01□□□□□ -0.49
VPS53-206ENST00000570359 PANK2Q9BZ23 570 aa12.01□□□□□ -0.49
VPS53-206ENST00000570359 CASTP20810 708 aaKnown RBP12.01□□□□□ -0.49
VPS53-206ENST00000570359 PLBD2Q8NHP8 589 aa12.01□□□□□ -0.49
VPS53-206ENST00000570359 HDAC5Q9UQL6 1122 aa12.01□□□□□ -0.49
VPS53-206ENST00000570359 CRYBG1Q9Y4K1 1723 aa12□□□□□ -0.49
VPS53-206ENST00000570359 BAG4O95429 457 aaKnown RBP12□□□□□ -0.49
VPS53-206ENST00000570359 DBNDD2Q9BQY9 259 aa12□□□□□ -0.49
VPS53-206ENST00000570359 CIZ1Q9ULV3 898 aaPredicted RBP12□□□□□ -0.49
VPS53-206ENST00000570359 SNX14Q9Y5W7 946 aa12□□□□□ -0.49
VPS53-206ENST00000570359 GOLGA6L3A6NEY3 463 aa12□□□□□ -0.49
VPS53-206ENST00000570359 DDX46Q7L014 1031 aaKnown RBP12□□□□□ -0.49
VPS53-206ENST00000570359 SYNE4Q8N205 404 aa12□□□□□ -0.49
VPS53-206ENST00000570359 ACSBG1Q96GR2 724 aa12□□□□□ -0.49
VPS53-206ENST00000570359 JAKMIP1Q96N16 626 aaKnown RBP12□□□□□ -0.49
VPS53-206ENST00000570359 LSG1Q9H089 658 aaKnown RBP12□□□□□ -0.49
VPS53-206ENST00000570359 DDX49Q9Y6V7 483 aaKnown RBP12□□□□□ -0.49
VPS53-206ENST00000570359 AFDNP55196 1824 aaKnown RBP12□□□□□ -0.49
VPS53-206ENST00000570359 AOX1Q06278 1338 aa11.99□□□□□ -0.49
VPS53-206ENST00000570359 A0A0D9SFI3 127 aa11.99□□□□□ -0.49
VPS53-206ENST00000570359 GOLGA6L22H0YM25 854 aa11.99□□□□□ -0.49
VPS53-206ENST00000570359 PTPN12Q05209 780 aaKnown RBP11.99□□□□□ -0.49
VPS53-206ENST00000570359 CCDC129Q6ZRS4 1044 aa11.99□□□□□ -0.49
VPS53-206ENST00000570359 PIGBQ92521 554 aa11.99□□□□□ -0.49
VPS53-206ENST00000570359 TTC41PQ6P2S7 1318 aa11.99□□□□□ -0.49
VPS53-206ENST00000570359 TIMM10P62072 90 aa11.99□□□□□ -0.49
VPS53-206ENST00000570359 COL9A3Q14050 684 aaPredicted RBP11.99□□□□□ -0.49
VPS53-206ENST00000570359 ADCK5Q3MIX3 580 aa11.99□□□□□ -0.49
VPS53-206ENST00000570359 FAM89AQ96GI7 184 aa11.99□□□□□ -0.49
VPS53-206ENST00000570359 CWC25Q9NXE8 425 aaPredicted RBP11.99□□□□□ -0.49
VPS53-206ENST00000570359 DBNLQ9UJU6 430 aaKnown RBP11.99□□□□□ -0.49
VPS53-206ENST00000570359 RAD50Q92878 1312 aa11.99□□□□□ -0.49
VPS53-206ENST00000570359 PRPF40AO75400 957 aaKnown RBP11.98□□□□□ -0.49
VPS53-206ENST00000570359 HSPA4P34932 840 aa11.98□□□□□ -0.49
VPS53-206ENST00000570359 GDPD2Q9HCC8 539 aa11.98□□□□□ -0.49
VPS53-206ENST00000570359 LRRC24Q50LG9 513 aa11.98□□□□□ -0.49
VPS53-206ENST00000570359 TUBGCP6Q96RT7 1819 aa11.98□□□□□ -0.49
VPS53-206ENST00000570359 ERVV-2B6SEH9 535 aa11.97□□□□□ -0.49
VPS53-206ENST00000570359 AK2P54819 239 aa11.97□□□□□ -0.49
VPS53-206ENST00000570359 TNNI3KQ59H18 835 aa11.97□□□□□ -0.49
VPS53-206ENST00000570359 EVI5LQ96CN4 794 aa11.97□□□□□ -0.49
VPS53-206ENST00000570359 SEC62Q99442 399 aaKnown RBP11.97□□□□□ -0.49
VPS53-206ENST00000570359 PUS3Q9BZE2 481 aaKnown RBP11.97□□□□□ -0.49
VPS53-206ENST00000570359 FPGT-TNNI3KV9GXZ4 949 aa11.97□□□□□ -0.49
VPS53-206ENST00000570359 UTYO14607 1347 aa11.97□□□□□ -0.49
VPS53-206ENST00000570359 ZNF589Q86UQ0 364 aaPredicted RBP11.97□□□□□ -0.49
VPS53-206ENST00000570359 RUFY2Q8WXA3 655 aa11.97□□□□□ -0.49
VPS53-206ENST00000570359 ZDHHC9Q9Y397 364 aa11.97□□□□□ -0.49
VPS53-206ENST00000570359 TAF6LQ9Y6J9 622 aa11.97□□□□□ -0.49
VPS53-206ENST00000570359 CAVIN1Q6NZI2 390 aaKnown RBP11.96□□□□□ -0.49
VPS53-206ENST00000570359 SNRKQ9NRH2 765 aa11.96□□□□□ -0.49
VPS53-206ENST00000570359 RBM27Q9P2N5 1060 aaKnown RBP11.96□□□□□ -0.49
VPS53-206ENST00000570359 RBM8AQ9Y5S9 174 aaKnown RBP11.96□□□□□ -0.49
VPS53-206ENST00000570359 ADAMTS7Q9UKP4 1686 aa11.96□□□□□ -0.49
VPS53-206ENST00000570359 LARGE1O95461 756 aa11.96□□□□□ -0.49
VPS53-206ENST00000570359 NUCB2P80303 420 aa11.96□□□□□ -0.49
VPS53-206ENST00000570359 TAF7LQ5H9L4 462 aa11.96□□□□□ -0.49
VPS53-206ENST00000570359 TBC1D2BQ9UPU7 963 aa11.96□□□□□ -0.49
VPS53-206ENST00000570359 PKD1L3Q7Z443 1732 aa11.96□□□□□ -0.5
VPS53-206ENST00000570359 RFX5P48382 616 aaPredicted RBP11.96□□□□□ -0.5
VPS53-206ENST00000570359 HSP90AB3PQ58FF7 597 aa11.96□□□□□ -0.5
VPS53-206ENST00000570359 CCDC83Q8IWF9 413 aa11.96□□□□□ -0.5
VPS53-206ENST00000570359 NECAB1Q8N987 351 aa11.96□□□□□ -0.5
VPS53-206ENST00000570359 GOLIM4O00461 696 aa11.95□□□□□ -0.5
VPS53-206ENST00000570359 PRIM1P49642 420 aaKnown RBP11.95□□□□□ -0.5
VPS53-206ENST00000570359 STK3Q13188 491 aa11.95□□□□□ -0.5
VPS53-206ENST00000570359 ATG3Q9NT62 314 aa11.95□□□□□ -0.5
VPS53-206ENST00000570359 ARFGEF2Q9Y6D5 1785 aa11.95□□□□□ -0.5
VPS53-206ENST00000570359 FOXO4P98177 505 aa11.95□□□□□ -0.5
VPS53-206ENST00000570359 HLFQ16534 295 aa11.95□□□□□ -0.5
VPS53-206ENST00000570359 KIF6Q6ZMV9 814 aa11.95□□□□□ -0.5
VPS53-206ENST00000570359 MRC1P22897 1456 aa11.94□□□□□ -0.5
VPS53-206ENST00000570359 CCDC171Q6TFL3 1326 aa11.94□□□□□ -0.5
VPS53-206ENST00000570359 XRCC6P12956 609 aaKnown RBP eCLIP11.94□□□□□ -0.5
VPS53-206ENST00000570359 GAS2L3Q86XJ1 694 aa11.94□□□□□ -0.5
VPS53-206ENST00000570359 TAOK2Q9UL54 1235 aa11.94□□□□□ -0.5
VPS53-206ENST00000570359 PARP4Q9UKK3 1724 aaKnown RBP11.94□□□□□ -0.5
VPS53-206ENST00000570359 PPFIA3O75145 1194 aa11.94□□□□□ -0.5
VPS53-206ENST00000570359 ANAPC15P60006 121 aa11.94□□□□□ -0.5
VPS53-206ENST00000570359 RUFY3Q7L099 469 aa11.94□□□□□ -0.5
VPS53-206ENST00000570359 COPRSQ9NQ92 184 aa11.94□□□□□ -0.5
VPS53-206ENST00000570359 PDRG1Q9NUG6 133 aa11.94□□□□□ -0.5
VPS53-206ENST00000570359 EXOC5O00471 708 aa11.93□□□□□ -0.5
VPS53-206ENST00000570359 CASP7P55210 303 aa11.93□□□□□ -0.5
VPS53-206ENST00000570359 KCNQ4P56696 695 aa11.93□□□□□ -0.5
VPS53-206ENST00000570359 FKBP4Q02790 459 aaKnown RBP eCLIP11.93□□□□□ -0.5
VPS53-206ENST00000570359 GORABQ5T7V8 394 aa11.93□□□□□ -0.5
VPS53-206ENST00000570359 CREB3L3Q68CJ9 461 aa11.93□□□□□ -0.5
VPS53-206ENST00000570359 ZBTB1Q9Y2K1 713 aa11.93□□□□□ -0.5
VPS53-206ENST00000570359 USP42Q9H9J4 1324 aaKnown RBP11.93□□□□□ -0.5
VPS53-206ENST00000570359 LRRC2Q9BYS8 371 aa11.93□□□□□ -0.5
VPS53-206ENST00000570359 CWC22Q9HCG8 908 aaKnown RBP11.93□□□□□ -0.5
VPS53-206ENST00000570359 NAP1L2Q9ULW6 460 aaPredicted RBP11.93□□□□□ -0.5
VPS53-206ENST00000570359 ZKSCAN1P17029 563 aaPredicted RBP11.92□□□□□ -0.5
VPS53-206ENST00000570359 CCDC57Q2TAC2 916 aa11.92□□□□□ -0.5
VPS53-206ENST00000570359 L1TD1Q5T7N2 865 aaKnown RBP11.92□□□□□ -0.5
VPS53-206ENST00000570359 NSFL1CQ9UNZ2 370 aaKnown RBP11.92□□□□□ -0.5
VPS53-206ENST00000570359 H7C1W4 665 aa11.92□□□□□ -0.5
VPS53-206ENST00000570359 FOSBP53539 338 aa11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms