RNA–Protein interactions for RNA: ENST00000568782.1

UBR1-207, Transcript of ubiquitin protein ligase E3 component n-recognin 1, human

TSL 3

Gene UBR1, Length 615 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBR1-207	ENST00000568782	RIC3	Q7Z5B4	369 aa		13.37	□□□□□ -0.27
UBR1-207	ENST00000568782	PLBD2	Q8NHP8	589 aa		13.37	□□□□□ -0.27
UBR1-207	ENST00000568782	RBM17	Q96I25	401 aa	Known RBP	13.37	□□□□□ -0.27
UBR1-207	ENST00000568782	STK31	Q9BXU1	1019 aa		13.37	□□□□□ -0.27
UBR1-207	ENST00000568782	TAOK3	Q9H2K8	898 aa		13.37	□□□□□ -0.27
UBR1-207	ENST00000568782	KLRG2	A4D1S0	409 aa	Predicted RBP	13.36	□□□□□ -0.27
UBR1-207	ENST00000568782	HSP90B1	P14625	803 aa	Known RBP	13.36	□□□□□ -0.27
UBR1-207	ENST00000568782	RASSF7	Q02833	373 aa		13.36	□□□□□ -0.27
UBR1-207	ENST00000568782	WWC1	Q8IX03	1113 aa		13.36	□□□□□ -0.27
UBR1-207	ENST00000568782	RTKN2	Q8IZC4	609 aa		13.36	□□□□□ -0.27
UBR1-207	ENST00000568782	TRMT112	Q9UI30	125 aa	Known RBP	13.36	□□□□□ -0.27
UBR1-207	ENST00000568782	SALL2	Q9Y467	1007 aa	Predicted RBP	13.36	□□□□□ -0.27
UBR1-207	ENST00000568782	DICER1	Q9UPY3	1922 aa	Known RBP	13.36	□□□□□ -0.27
UBR1-207	ENST00000568782	FER1L6	Q2WGJ9	1857 aa		13.36	□□□□□ -0.27
UBR1-207	ENST00000568782	GRIPAP1	Q4V328	841 aa		13.35	□□□□□ -0.27
UBR1-207	ENST00000568782	CC2D2B	Q6DHV5	1058 aa		13.35	□□□□□ -0.27
UBR1-207	ENST00000568782	LRP10	Q7Z4F1	713 aa		13.35	□□□□□ -0.27
UBR1-207	ENST00000568782	IL16	Q14005	1332 aa		13.35	□□□□□ -0.27
UBR1-207	ENST00000568782	UBN2	Q6ZU65	1347 aa		13.35	□□□□□ -0.27
UBR1-207	ENST00000568782	CACNA1F	O60840	1977 aa		13.34	□□□□□ -0.27
UBR1-207	ENST00000568782	NTSR2	O95665	410 aa		13.34	□□□□□ -0.27
UBR1-207	ENST00000568782	WDR63	Q8IWG1	891 aa		13.34	□□□□□ -0.27
UBR1-207	ENST00000568782	SH3TC1	Q8TE82	1336 aa		13.34	□□□□□ -0.27
UBR1-207	ENST00000568782	SENP3-EIF4A1	A0A087X0R7	540 aa		13.33	□□□□□ -0.28
UBR1-207	ENST00000568782	NLRP10	Q86W26	655 aa		13.33	□□□□□ -0.28
UBR1-207	ENST00000568782	C8orf58	Q8NAV2	365 aa		13.33	□□□□□ -0.28
UBR1-207	ENST00000568782	LTBP3	Q9NS15	1303 aa		13.33	□□□□□ -0.28
UBR1-207	ENST00000568782	RIC1	Q4ADV7	1423 aa		13.32	□□□□□ -0.28
UBR1-207	ENST00000568782	NFKBIE	O00221	500 aa		13.32	□□□□□ -0.28
UBR1-207	ENST00000568782	TOMM70	O94826	608 aa		13.32	□□□□□ -0.28
UBR1-207	ENST00000568782	TWISTNB	Q3B726	338 aa	Predicted RBP	13.32	□□□□□ -0.28
UBR1-207	ENST00000568782	CRY2	Q49AN0	593 aa		13.32	□□□□□ -0.28
UBR1-207	ENST00000568782	SLC10A5	Q5PT55	438 aa		13.32	□□□□□ -0.28
UBR1-207	ENST00000568782	DDX46	Q7L014	1031 aa	Known RBP	13.32	□□□□□ -0.28
UBR1-207	ENST00000568782	TSR2	Q969E8	191 aa	Known RBP	13.32	□□□□□ -0.28
UBR1-207	ENST00000568782	CRAMP1	Q96RY5	1269 aa		13.32	□□□□□ -0.28
UBR1-207	ENST00000568782	MYH16	Q9H6N6	1097 aa		13.32	□□□□□ -0.28
UBR1-207	ENST00000568782	TNRC6C	Q9HCJ0	1690 aa	Known RBP	13.31	□□□□□ -0.28
UBR1-207	ENST00000568782	TIAM2	Q8IVF5	1701 aa		13.31	□□□□□ -0.28
UBR1-207	ENST00000568782	GLTPD2	A6NH11	291 aa		13.31	□□□□□ -0.28
UBR1-207	ENST00000568782	HOXA10	P31260	410 aa	Predicted RBP	13.31	□□□□□ -0.28
UBR1-207	ENST00000568782	FKBP4	Q02790	459 aa	Known RBP eCLIP	13.31	□□□□□ -0.28
UBR1-207	ENST00000568782	NEXN	Q0ZGT2	675 aa		13.31	□□□□□ -0.28
UBR1-207	ENST00000568782	RRAGC	Q9HB90	399 aa		13.31	□□□□□ -0.28
UBR1-207	ENST00000568782	ABCC12	Q96J65	1359 aa		13.31	□□□□□ -0.28
UBR1-207	ENST00000568782	ATP5J2-PTCD1	G3V325	749 aa		13.3	□□□□□ -0.28
UBR1-207	ENST00000568782	PPEF1	O14829	653 aa	Predicted RBP	13.3	□□□□□ -0.28
UBR1-207	ENST00000568782	JDP2	Q8WYK2	163 aa		13.3	□□□□□ -0.28
UBR1-207	ENST00000568782	NMRK2	Q9NPI5	230 aa		13.3	□□□□□ -0.28
UBR1-207	ENST00000568782	TCERG1	O14776	1098 aa	Known RBP	13.29	□□□□□ -0.28
UBR1-207	ENST00000568782	KIF3C	O14782	793 aa		13.29	□□□□□ -0.28
UBR1-207	ENST00000568782	BBOX1	O75936	387 aa		13.29	□□□□□ -0.28
UBR1-207	ENST00000568782	HCLS1	P14317	486 aa	Predicted RBP	13.29	□□□□□ -0.28
UBR1-207	ENST00000568782	VEGFA	P15692	232 aa	Predicted RBP	13.29	□□□□□ -0.28
UBR1-207	ENST00000568782	MYD88	Q99836	296 aa		13.29	□□□□□ -0.28
UBR1-207	ENST00000568782	PHAX	Q9H814	394 aa	Known RBP	13.29	□□□□□ -0.28
UBR1-207	ENST00000568782	SLC4A2	P04920	1241 aa		13.28	□□□□□ -0.28
UBR1-207	ENST00000568782	TRIM28	Q13263	835 aa	Known RBP	13.28	□□□□□ -0.28
UBR1-207	ENST00000568782	SYNE4	Q8N205	404 aa		13.28	□□□□□ -0.28
UBR1-207	ENST00000568782	TSPYL6	Q8N831	410 aa		13.28	□□□□□ -0.28
UBR1-207	ENST00000568782	CCDC191	Q8NCU4	936 aa		13.28	□□□□□ -0.28
UBR1-207	ENST00000568782	SUPT20H	Q8NEM7	779 aa		13.28	□□□□□ -0.28
UBR1-207	ENST00000568782	C7orf43	Q8WVR3	580 aa		13.28	□□□□□ -0.28
UBR1-207	ENST00000568782	FAM89A	Q96GI7	184 aa		13.28	□□□□□ -0.28
UBR1-207	ENST00000568782	ISCA1	Q9BUE6	129 aa		13.28	□□□□□ -0.28
UBR1-207	ENST00000568782	IARS	P41252	1262 aa	Known RBP	13.27	□□□□□ -0.29
UBR1-207	ENST00000568782	RTL5	Q5HYW3	569 aa	Predicted RBP	13.27	□□□□□ -0.29
UBR1-207	ENST00000568782	KSR2	Q6VAB6	950 aa		13.27	□□□□□ -0.29
UBR1-207	ENST00000568782	TMC4	Q7Z404	712 aa		13.27	□□□□□ -0.29
UBR1-207	ENST00000568782	RBM46	Q8TBY0	533 aa	Known RBP	13.27	□□□□□ -0.29
UBR1-207	ENST00000568782	PSMD1	Q99460	953 aa		13.27	□□□□□ -0.29
UBR1-207	ENST00000568782	ZNF277	Q9NRM2	450 aa	Predicted RBP	13.27	□□□□□ -0.29
UBR1-207	ENST00000568782	CWC25	Q9NXE8	425 aa	Predicted RBP	13.27	□□□□□ -0.29
UBR1-207	ENST00000568782	LAMB2	P55268	1798 aa		13.27	□□□□□ -0.29
UBR1-207	ENST00000568782	IRS4	O14654	1257 aa	Predicted RBP	13.26	□□□□□ -0.29
UBR1-207	ENST00000568782	EIF6	P56537	245 aa	Known RBP	13.26	□□□□□ -0.29
UBR1-207	ENST00000568782	ZBTB38	Q8NAP3	1195 aa	Predicted RBP	13.26	□□□□□ -0.29
UBR1-207	ENST00000568782	METTL22	Q9BUU2	404 aa	Predicted RBP	13.26	□□□□□ -0.29
UBR1-207	ENST00000568782	FANCI	Q9NVI1	1328 aa		13.26	□□□□□ -0.29
UBR1-207	ENST00000568782	MAP3K2	Q9Y2U5	619 aa		13.26	□□□□□ -0.29
UBR1-207	ENST00000568782	ATP6V0A2	Q9Y487	856 aa		13.26	□□□□□ -0.29
UBR1-207	ENST00000568782	ABCC4	O15439	1325 aa		13.25	□□□□□ -0.29
UBR1-207	ENST00000568782	PI4KAP2	A4QPH2	592 aa		13.25	□□□□□ -0.29
UBR1-207	ENST00000568782	IQCA1L	A6NCM1	817 aa		13.25	□□□□□ -0.29
UBR1-207	ENST00000568782	HSPA6	P17066	643 aa		13.25	□□□□□ -0.29
UBR1-207	ENST00000568782	EXOSC9	Q06265	439 aa	Known RBP	13.25	□□□□□ -0.29
UBR1-207	ENST00000568782	FSTL1	Q12841	308 aa		13.25	□□□□□ -0.29
UBR1-207	ENST00000568782	FKBP5	Q13451	457 aa	Predicted RBP	13.25	□□□□□ -0.29
UBR1-207	ENST00000568782	GRAP	Q13588	217 aa		13.25	□□□□□ -0.29
UBR1-207	ENST00000568782	SP8	Q8IXZ3	490 aa		13.25	□□□□□ -0.29
UBR1-207	ENST00000568782	LARGE2	Q8N3Y3	721 aa		13.25	□□□□□ -0.29
UBR1-207	ENST00000568782	PI4KAP1	Q8N8J0	262 aa		13.25	□□□□□ -0.29
UBR1-207	ENST00000568782	GRAPL	Q8TC17	118 aa	Predicted RBP	13.25	□□□□□ -0.29
UBR1-207	ENST00000568782	ZNF428	Q96B54	188 aa		13.25	□□□□□ -0.29
UBR1-207	ENST00000568782	VPS33B	Q9H267	617 aa		13.25	□□□□□ -0.29
UBR1-207	ENST00000568782	PRELP	P51888	382 aa		13.24	□□□□□ -0.29
UBR1-207	ENST00000568782	OLFM4	Q6UX06	510 aa		13.24	□□□□□ -0.29
UBR1-207	ENST00000568782	DPP8	Q6V1X1	898 aa	Predicted RBP	13.24	□□□□□ -0.29
UBR1-207	ENST00000568782	NIM1K	Q8IY84	436 aa		13.24	□□□□□ -0.29
UBR1-207	ENST00000568782	MPND	Q8N594	471 aa		13.24	□□□□□ -0.29

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