RNA–Protein interactions for RNA: ENST00000568472.6

CLN3-234, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 1,011 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-234ENST00000568472 SLC10A5Q5PT55 438 aa27.94■■■□□ 2.06
CLN3-234ENST00000568472 LINS1Q8NG48 757 aa27.94■■■□□ 2.06
CLN3-234ENST00000568472 BCL2L13Q9BXK5 485 aa27.94■■■□□ 2.06
CLN3-234ENST00000568472 AFDNP55196 1824 aaKnown RBP27.94■■■□□ 2.06
CLN3-234ENST00000568472 A0A0G2JLW4 131 aa27.93■■■□□ 2.06
CLN3-234ENST00000568472 KLRG2A4D1S0 409 aaPredicted RBP27.93■■■□□ 2.06
CLN3-234ENST00000568472 DPEP1P16444 411 aa27.93■■■□□ 2.06
CLN3-234ENST00000568472 ERFEQ4G0M1 354 aa27.93■■■□□ 2.06
CLN3-234ENST00000568472 NUTM1Q86Y26 1132 aa27.93■■■□□ 2.06
CLN3-234ENST00000568472 RIC1Q4ADV7 1423 aa27.92■■■□□ 2.06
CLN3-234ENST00000568472 ARFGEF2Q9Y6D5 1785 aa27.92■■■□□ 2.06
CLN3-234ENST00000568472 PXDNLA1KZ92 1463 aa27.92■■■□□ 2.06
CLN3-234ENST00000568472 C2CD5Q86YS7 1000 aa27.92■■■□□ 2.06
CLN3-234ENST00000568472 KIF16BQ96L93 1317 aa27.92■■■□□ 2.06
CLN3-234ENST00000568472 IGKV5-2P06315 115 aa27.91■■■□□ 2.06
CLN3-234ENST00000568472 CCDC24Q8N4L8 307 aa27.91■■■□□ 2.06
CLN3-234ENST00000568472 ZBTB38Q8NAP3 1195 aaPredicted RBP27.91■■■□□ 2.06
CLN3-234ENST00000568472 PIM2Q9P1W9 311 aa27.91■■■□□ 2.06
CLN3-234ENST00000568472 ANKRD36CQ5JPF3 1778 aa27.91■■■□□ 2.06
CLN3-234ENST00000568472 NEURL1BA8MQ27 555 aa27.9■■■□□ 2.06
CLN3-234ENST00000568472 IPO8O15397 1037 aaKnown RBP27.9■■■□□ 2.06
CLN3-234ENST00000568472 ARHGAP45Q92619 1136 aa27.9■■■□□ 2.06
CLN3-234ENST00000568472 YTHDC1Q96MU7 727 aaKnown RBP27.9■■■□□ 2.06
CLN3-234ENST00000568472 F6X3S4 739 aa27.89■■■□□ 2.06
CLN3-234ENST00000568472 KCNA3P22001 575 aa27.89■■■□□ 2.06
CLN3-234ENST00000568472 NLRP3Q96P20 1036 aa27.89■■■□□ 2.06
CLN3-234ENST00000568472 PCCAP05165 728 aaPredicted RBP27.88■■■□□ 2.05
CLN3-234ENST00000568472 CHRNA5P30532 468 aa27.88■■■□□ 2.05
CLN3-234ENST00000568472 BEND3Q5T5X7 828 aa27.88■■■□□ 2.05
CLN3-234ENST00000568472 API5Q9BZZ5 524 aaKnown RBP27.88■■■□□ 2.05
CLN3-234ENST00000568472 NOB1Q9ULX3 412 aaKnown RBP27.88■■■□□ 2.05
CLN3-234ENST00000568472 SRGNP10124 158 aa27.87■■■□□ 2.05
CLN3-234ENST00000568472 STYK1Q6J9G0 422 aa27.87■■■□□ 2.05
CLN3-234ENST00000568472 FAM89AQ96GI7 184 aa27.87■■■□□ 2.05
CLN3-234ENST00000568472 MASTLQ96GX5 879 aa27.87■■■□□ 2.05
CLN3-234ENST00000568472 ALDH1L1O75891 902 aa27.86■■■□□ 2.05
CLN3-234ENST00000568472 NPR1P16066 1061 aa27.86■■■□□ 2.05
CLN3-234ENST00000568472 GCKRQ14397 625 aa27.86■■■□□ 2.05
CLN3-234ENST00000568472 CWF19L2Q2TBE0 894 aaKnown RBP27.86■■■□□ 2.05
CLN3-234ENST00000568472 CRY2Q49AN0 593 aa27.86■■■□□ 2.05
CLN3-234ENST00000568472 SLC4A10Q6U841 1118 aa27.86■■■□□ 2.05
CLN3-234ENST00000568472 ABCC12Q96J65 1359 aa27.86■■■□□ 2.05
CLN3-234ENST00000568472 GPR162Q16538 588 aa27.85■■■□□ 2.05
CLN3-234ENST00000568472 DALRD3Q5D0E6 543 aaKnown RBP27.85■■■□□ 2.05
CLN3-234ENST00000568472 CNKSR1Q969H4 720 aa27.85■■■□□ 2.05
CLN3-234ENST00000568472 SRCIN1Q9C0H9 1055 aa27.85■■■□□ 2.05
CLN3-234ENST00000568472 TTLL6Q8N841 843 aa27.84■■■□□ 2.05
CLN3-234ENST00000568472 IRS4O14654 1257 aaPredicted RBP27.83■■■□□ 2.05
CLN3-234ENST00000568472 GRIN3BO60391 1043 aa27.83■■■□□ 2.05
CLN3-234ENST00000568472 BCAR3O75815 825 aa27.83■■■□□ 2.05
CLN3-234ENST00000568472 ZNF622Q969S3 477 aaKnown RBP eCLIP27.83■■■□□ 2.05
CLN3-234ENST00000568472 H7C1W4 665 aa27.82■■■□□ 2.04
CLN3-234ENST00000568472 HCLS1P14317 486 aaPredicted RBP27.82■■■□□ 2.04
CLN3-234ENST00000568472 ALDH1B1P30837 517 aa27.82■■■□□ 2.04
CLN3-234ENST00000568472 HOXA10P31260 410 aaPredicted RBP27.82■■■□□ 2.04
CLN3-234ENST00000568472 SYNE4Q8N205 404 aa27.82■■■□□ 2.04
CLN3-234ENST00000568472 CDHR2Q9BYE9 1310 aa27.82■■■□□ 2.04
CLN3-234ENST00000568472 PELP1Q8IZL8 1130 aaKnown RBP27.81■■■□□ 2.04
CLN3-234ENST00000568472 RPGRQ92834 1020 aaKnown RBP27.81■■■□□ 2.04
CLN3-234ENST00000568472 KIAA1551Q9HCM1 1747 aa27.81■■■□□ 2.04
CLN3-234ENST00000568472 CCT4P50991 539 aaKnown RBP27.8■■■□□ 2.04
CLN3-234ENST00000568472 BCS1LQ9Y276 419 aa27.8■■■□□ 2.04
CLN3-234ENST00000568472 ANKRD31Q8N7Z5 1873 aa27.79■■■□□ 2.04
CLN3-234ENST00000568472 RTL5Q5HYW3 569 aaPredicted RBP27.79■■■□□ 2.04
CLN3-234ENST00000568472 RBM17Q96I25 401 aaKnown RBP27.79■■■□□ 2.04
CLN3-234ENST00000568472 PDE8AO60658 829 aa27.78■■■□□ 2.04
CLN3-234ENST00000568472 SF3B3Q15393 1217 aaKnown RBP27.78■■■□□ 2.04
CLN3-234ENST00000568472 ZKSCAN2Q63HK3 967 aa27.78■■■□□ 2.04
CLN3-234ENST00000568472 ATF7IPQ6VMQ6 1270 aa27.78■■■□□ 2.04
CLN3-234ENST00000568472 FRAT1Q92837 279 aaPredicted RBP27.78■■■□□ 2.04
CLN3-234ENST00000568472 CRAMP1Q96RY5 1269 aa27.78■■■□□ 2.04
CLN3-234ENST00000568472 RCAN3Q9UKA8 241 aa27.78■■■□□ 2.04
CLN3-234ENST00000568472 UBE3BQ7Z3V4 1068 aa27.77■■■□□ 2.04
CLN3-234ENST00000568472 C9orf78Q9NZ63 289 aaPredicted RBP27.77■■■□□ 2.04
CLN3-234ENST00000568472 N4BP2Q86UW6 1770 aaPredicted RBP27.77■■■□□ 2.04
CLN3-234ENST00000568472 GRM8O00222 908 aa27.76■■■□□ 2.03
CLN3-234ENST00000568472 YBX3P16989 372 aaKnown RBP eCLIP27.76■■■□□ 2.03
CLN3-234ENST00000568472 C3orf67Q6ZVT6 689 aa27.75■■■□□ 2.03
CLN3-234ENST00000568472 PLA2G12BQ9BX93 195 aa27.75■■■□□ 2.03
CLN3-234ENST00000568472 CASP7P55210 303 aa27.74■■■□□ 2.03
CLN3-234ENST00000568472 DDX46Q7L014 1031 aaKnown RBP27.74■■■□□ 2.03
CLN3-234ENST00000568472 TRIM27P14373 513 aa27.73■■■□□ 2.03
CLN3-234ENST00000568472 CCDC152Q4G0S7 254 aa27.73■■■□□ 2.03
CLN3-234ENST00000568472 SOGA3Q5TF21 947 aa27.73■■■□□ 2.03
CLN3-234ENST00000568472 PRPF40BQ6NWY9 871 aaKnown RBP27.73■■■□□ 2.03
CLN3-234ENST00000568472 JARID2Q92833 1246 aaPredicted RBP27.73■■■□□ 2.03
CLN3-234ENST00000568472 WWC3Q9ULE0 1092 aa27.73■■■□□ 2.03
CLN3-234ENST00000568472 UTYO14607 1347 aa27.72■■■□□ 2.03
CLN3-234ENST00000568472 ABCC4O15439 1325 aa27.72■■■□□ 2.03
CLN3-234ENST00000568472 INTS3Q68E01 1043 aaKnown RBP27.72■■■□□ 2.03
CLN3-234ENST00000568472 DLEC1Q9Y238 1755 aa27.72■■■□□ 2.03
CLN3-234ENST00000568472 BBOX1O75936 387 aa27.71■■■□□ 2.03
CLN3-234ENST00000568472 MS4A1P11836 297 aa27.71■■■□□ 2.03
CLN3-234ENST00000568472 HDAC5Q9UQL6 1122 aa27.71■■■□□ 2.03
CLN3-234ENST00000568472 TNRC6CQ9HCJ0 1690 aaKnown RBP27.71■■■□□ 2.03
CLN3-234ENST00000568472 CTSWP56202 376 aa27.7■■■□□ 2.02
CLN3-234ENST00000568472 COL11A2P13942 1736 aaPredicted RBP27.7■■■□□ 2.02
CLN3-234ENST00000568472 CC2D2BQ6DHV5 1058 aa27.69■■■□□ 2.02
CLN3-234ENST00000568472 TMC4Q7Z404 712 aa27.69■■■□□ 2.02
CLN3-234ENST00000568472 BRCA1P38398 1863 aaKnown RBP27.69■■■□□ 2.02
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms