RNA–Protein interactions for RNA: ENST00000568291.2

SF3B3-211, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 1,067 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-211ENST00000568291 SOGA3Q5TF21 947 aa12.36□□□□□ -0.43
SF3B3-211ENST00000568291 COPS6Q7L5N1 327 aa12.36□□□□□ -0.43
SF3B3-211ENST00000568291 LRP10Q7Z4F1 713 aa12.36□□□□□ -0.43
SF3B3-211ENST00000568291 NBPF5PQ86XG9 351 aaPredicted RBP12.36□□□□□ -0.43
SF3B3-211ENST00000568291 WWC1Q8IX03 1113 aa12.36□□□□□ -0.43
SF3B3-211ENST00000568291 TSPYL6Q8N831 410 aa12.36□□□□□ -0.43
SF3B3-211ENST00000568291 XAGE3Q8WTP9 111 aa12.36□□□□□ -0.43
SF3B3-211ENST00000568291 MASTLQ96GX5 879 aa12.36□□□□□ -0.43
SF3B3-211ENST00000568291 CHPF2Q9P2E5 772 aa12.36□□□□□ -0.43
SF3B3-211ENST00000568291 HDGFL1Q5TGJ6 251 aa12.35□□□□□ -0.43
SF3B3-211ENST00000568291 CLEC4GQ6UXB4 293 aa12.35□□□□□ -0.43
SF3B3-211ENST00000568291 KIF6Q6ZMV9 814 aa12.35□□□□□ -0.43
SF3B3-211ENST00000568291 NUTM1Q86Y26 1132 aa12.35□□□□□ -0.43
SF3B3-211ENST00000568291 IFT57Q9NWB7 429 aa12.35□□□□□ -0.43
SF3B3-211ENST00000568291 MAP3K15Q6ZN16 1313 aa12.35□□□□□ -0.43
SF3B3-211ENST00000568291 GNAI1P63096 354 aa12.34□□□□□ -0.43
SF3B3-211ENST00000568291 CCDC93Q567U6 631 aa12.33□□□□□ -0.44
SF3B3-211ENST00000568291 COL13A1Q5TAT6 717 aaPredicted RBP12.33□□□□□ -0.44
SF3B3-211ENST00000568291 SUSD4Q5VX71 490 aa12.33□□□□□ -0.44
SF3B3-211ENST00000568291 SPINK5Q9NQ38 1064 aaPredicted RBP12.33□□□□□ -0.44
SF3B3-211ENST00000568291 ADAMTSL1Q8N6G6 1762 aa12.33□□□□□ -0.44
SF3B3-211ENST00000568291 ERVV-1B6SEH8 477 aa12.32□□□□□ -0.44
SF3B3-211ENST00000568291 RGL2O15211 777 aa12.32□□□□□ -0.44
SF3B3-211ENST00000568291 DDNO94850 711 aaPredicted RBP12.32□□□□□ -0.44
SF3B3-211ENST00000568291 HSPA1AP0DMV8 641 aaKnown RBP12.32□□□□□ -0.44
SF3B3-211ENST00000568291 HSPA1BP0DMV9 641 aaKnown RBP12.32□□□□□ -0.44
SF3B3-211ENST00000568291 NPR1P16066 1061 aa12.32□□□□□ -0.44
SF3B3-211ENST00000568291 GTF2E1P29083 439 aaPredicted RBP12.32□□□□□ -0.44
SF3B3-211ENST00000568291 SYNE4Q8N205 404 aa12.32□□□□□ -0.44
SF3B3-211ENST00000568291 PHAXQ9H814 394 aaKnown RBP12.32□□□□□ -0.44
SF3B3-211ENST00000568291 DDX21Q9NR30 783 aaKnown RBP eCLIP12.32□□□□□ -0.44
SF3B3-211ENST00000568291 UBN2Q6ZU65 1347 aa12.32□□□□□ -0.44
SF3B3-211ENST00000568291 ABCC12Q96J65 1359 aa12.31□□□□□ -0.44
SF3B3-211ENST00000568291 ANKRD36CQ5JPF3 1778 aa12.31□□□□□ -0.44
SF3B3-211ENST00000568291 POTEIP0CG38 1075 aa12.31□□□□□ -0.44
SF3B3-211ENST00000568291 POTEJP0CG39 1038 aa12.31□□□□□ -0.44
SF3B3-211ENST00000568291 CALD1Q05682 793 aaKnown RBP12.31□□□□□ -0.44
SF3B3-211ENST00000568291 CHADLQ6NUI6 762 aa12.31□□□□□ -0.44
SF3B3-211ENST00000568291 TPTE2Q6XPS3 522 aa12.31□□□□□ -0.44
SF3B3-211ENST00000568291 C7orf43Q8WVR3 580 aa12.31□□□□□ -0.44
SF3B3-211ENST00000568291 U3KPZ7 1027 aaPredicted RBP12.31□□□□□ -0.44
SF3B3-211ENST00000568291 ZNF541Q9H0D2 1346 aa12.31□□□□□ -0.44
SF3B3-211ENST00000568291 IQCA1LA6NCM1 817 aa12.3□□□□□ -0.44
SF3B3-211ENST00000568291 ATP5J2-PTCD1G3V325 749 aa12.3□□□□□ -0.44
SF3B3-211ENST00000568291 FKBP4Q02790 459 aaKnown RBP eCLIP12.3□□□□□ -0.44
SF3B3-211ENST00000568291 CCDC27Q2M243 656 aa12.3□□□□□ -0.44
SF3B3-211ENST00000568291 OLFM4Q6UX06 510 aa12.3□□□□□ -0.44
SF3B3-211ENST00000568291 GIGYF2Q6Y7W6 1299 aaKnown RBP12.3□□□□□ -0.44
SF3B3-211ENST00000568291 C3orf67Q6ZVT6 689 aa12.3□□□□□ -0.44
SF3B3-211ENST00000568291 SLC51AQ86UW1 340 aa12.3□□□□□ -0.44
SF3B3-211ENST00000568291 ZNF34Q8IZ26 560 aa12.3□□□□□ -0.44
SF3B3-211ENST00000568291 TNS4Q8IZW8 715 aa12.3□□□□□ -0.44
SF3B3-211ENST00000568291 L3MBTL3Q96JM7 780 aaPredicted RBP12.3□□□□□ -0.44
SF3B3-211ENST00000568291 ZNF277Q9NRM2 450 aaPredicted RBP12.3□□□□□ -0.44
SF3B3-211ENST00000568291 ERBB4Q15303 1308 aa12.3□□□□□ -0.44
SF3B3-211ENST00000568291 LAMB2P55268 1798 aa12.29□□□□□ -0.44
SF3B3-211ENST00000568291 KLRG2A4D1S0 409 aaPredicted RBP12.29□□□□□ -0.44
SF3B3-211ENST00000568291 CREBZFQ9NS37 354 aa12.29□□□□□ -0.44
SF3B3-211ENST00000568291 DBF4Q9UBU7 674 aaPredicted RBP12.29□□□□□ -0.44
SF3B3-211ENST00000568291 IBTKQ9P2D0 1353 aaPredicted RBP12.29□□□□□ -0.44
SF3B3-211ENST00000568291 RIC1Q4ADV7 1423 aa12.28□□□□□ -0.44
SF3B3-211ENST00000568291 SNED1Q8TER0 1413 aa12.28□□□□□ -0.44
SF3B3-211ENST00000568291 RTL5Q5HYW3 569 aaPredicted RBP12.28□□□□□ -0.44
SF3B3-211ENST00000568291 ANKRD13DQ6ZTN6 518 aa12.28□□□□□ -0.44
SF3B3-211ENST00000568291 LDHDQ86WU2 507 aa12.28□□□□□ -0.44
SF3B3-211ENST00000568291 MIER1Q8N108 512 aa12.28□□□□□ -0.44
SF3B3-211ENST00000568291 TAF1DQ9H5J8 278 aaPredicted RBP12.28□□□□□ -0.44
SF3B3-211ENST00000568291 MKRN1Q9UHC7 482 aaKnown RBP12.28□□□□□ -0.44
SF3B3-211ENST00000568291 COL4A5P29400 1685 aa12.28□□□□□ -0.44
SF3B3-211ENST00000568291 CAPN15O75808 1086 aa12.27□□□□□ -0.45
SF3B3-211ENST00000568291 NTSR2O95665 410 aa12.27□□□□□ -0.45
SF3B3-211ENST00000568291 HOXB7P09629 217 aa12.27□□□□□ -0.45
SF3B3-211ENST00000568291 HCLS1P14317 486 aaPredicted RBP12.27□□□□□ -0.45
SF3B3-211ENST00000568291 EXOSC9Q06265 439 aaKnown RBP12.27□□□□□ -0.45
SF3B3-211ENST00000568291 TCIRG1Q13488 830 aa12.27□□□□□ -0.45
SF3B3-211ENST00000568291 TWISTNBQ3B726 338 aaPredicted RBP12.27□□□□□ -0.45
SF3B3-211ENST00000568291 G2E3Q7L622 706 aa12.27□□□□□ -0.45
SF3B3-211ENST00000568291 RTKN2Q8IZC4 609 aa12.27□□□□□ -0.45
SF3B3-211ENST00000568291 JARID2Q92833 1246 aaPredicted RBP12.27□□□□□ -0.45
SF3B3-211ENST00000568291 NYXQ9GZU5 481 aa12.27□□□□□ -0.45
SF3B3-211ENST00000568291 LTBP1Q14766 1721 aa12.27□□□□□ -0.45
SF3B3-211ENST00000568291 FANCIQ9NVI1 1328 aa12.27□□□□□ -0.45
SF3B3-211ENST00000568291 CNTNAP1P78357 1384 aa12.27□□□□□ -0.45
SF3B3-211ENST00000568291 TRPM7Q96QT4 1865 aa12.27□□□□□ -0.45
SF3B3-211ENST00000568291 IARSP41252 1262 aaKnown RBP12.26□□□□□ -0.45
SF3B3-211ENST00000568291 EAPPQ56P03 285 aaPredicted RBP12.26□□□□□ -0.45
SF3B3-211ENST00000568291 DIEXFQ68CQ4 756 aaKnown RBP12.26□□□□□ -0.45
SF3B3-211ENST00000568291 NLRP10Q86W26 655 aa12.26□□□□□ -0.45
SF3B3-211ENST00000568291 WDR63Q8IWG1 891 aa12.26□□□□□ -0.45
SF3B3-211ENST00000568291 PLBD2Q8NHP8 589 aa12.26□□□□□ -0.45
SF3B3-211ENST00000568291 UTP14AQ9BVJ6 771 aaKnown RBP12.26□□□□□ -0.45
SF3B3-211ENST00000568291 HYPKQ9NX55 129 aa12.26□□□□□ -0.45
SF3B3-211ENST00000568291 PASKQ96RG2 1323 aa12.26□□□□□ -0.45
SF3B3-211ENST00000568291 ALDH1B1P30837 517 aa12.25□□□□□ -0.45
SF3B3-211ENST00000568291 CRY2Q49AN0 593 aa12.25□□□□□ -0.45
SF3B3-211ENST00000568291 RIC3Q7Z5B4 369 aa12.25□□□□□ -0.45
SF3B3-211ENST00000568291 TRMT112Q9UI30 125 aaKnown RBP12.25□□□□□ -0.45
SF3B3-211ENST00000568291 HACL1Q9UJ83 578 aa12.25□□□□□ -0.45
SF3B3-211ENST00000568291 RNF123Q5XPI4 1314 aa12.25□□□□□ -0.45
SF3B3-211ENST00000568291 PCNTO95613 3336 aa12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms