RNA–Protein interactions for RNA: ENST00000568108.1

PTPN9-205, Transcript of protein tyrosine phosphatase, non-receptor type 9, humanhuman

TSL 2

Gene PTPN9, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9-205ENST00000568108 SIPA1L3O60292 1781 aaPredicted RBP8.42□□□□□ -1.06
PTPN9-205ENST00000568108 ZNF541Q9H0D2 1346 aa8.41□□□□□ -1.06
PTPN9-205ENST00000568108 FOXN1O15353 648 aa8.41□□□□□ -1.06
PTPN9-205ENST00000568108 EPHX2P34913 555 aa8.41□□□□□ -1.06
PTPN9-205ENST00000568108 IARSP41252 1262 aaKnown RBP8.41□□□□□ -1.06
PTPN9-205ENST00000568108 VEGFBP49765 207 aa8.41□□□□□ -1.06
PTPN9-205ENST00000568108 PNMA8AQ86V59 439 aaPredicted RBP8.41□□□□□ -1.06
PTPN9-205ENST00000568108 NGEFQ8N5V2 710 aa8.41□□□□□ -1.06
PTPN9-205ENST00000568108 JDP2Q8WYK2 163 aa8.41□□□□□ -1.06
PTPN9-205ENST00000568108 AIDAQ96BJ3 306 aa8.41□□□□□ -1.06
PTPN9-205ENST00000568108 FZD9O00144 591 aa8.4□□□□□ -1.06
PTPN9-205ENST00000568108 PPP2R1AP30153 589 aa8.4□□□□□ -1.06
PTPN9-205ENST00000568108 CTCFP49711 727 aaPredicted RBP8.4□□□□□ -1.06
PTPN9-205ENST00000568108 CNTROBQ8N137 903 aa8.4□□□□□ -1.06
PTPN9-205ENST00000568108 NYXQ9GZU5 481 aa8.4□□□□□ -1.06
PTPN9-205ENST00000568108 PRDM10Q9NQV6 1147 aa8.4□□□□□ -1.06
PTPN9-205ENST00000568108 CACNA1SQ13698 1873 aa8.4□□□□□ -1.07
PTPN9-205ENST00000568108 RNF123Q5XPI4 1314 aa8.39□□□□□ -1.07
PTPN9-205ENST00000568108 SCN4AP35499 1836 aa8.39□□□□□ -1.07
PTPN9-205ENST00000568108 ERVV-1B6SEH8 477 aa8.39□□□□□ -1.07
PTPN9-205ENST00000568108 EIF6P56537 245 aaKnown RBP8.39□□□□□ -1.07
PTPN9-205ENST00000568108 DEFB115Q30KQ5 88 aa8.39□□□□□ -1.07
PTPN9-205ENST00000568108 MAP1SQ66K74 1059 aaPredicted RBP8.39□□□□□ -1.07
PTPN9-205ENST00000568108 CC2D2BQ6DHV5 1058 aa8.39□□□□□ -1.07
PTPN9-205ENST00000568108 NUTM1Q86Y26 1132 aa8.39□□□□□ -1.07
PTPN9-205ENST00000568108 GPC2Q8N158 579 aa8.39□□□□□ -1.07
PTPN9-205ENST00000568108 SPOCK2Q92563 424 aa8.39□□□□□ -1.07
PTPN9-205ENST00000568108 PSMD1Q99460 953 aa8.39□□□□□ -1.07
PTPN9-205ENST00000568108 WBP1LQ9NX94 342 aa8.39□□□□□ -1.07
PTPN9-205ENST00000568108 RRP7AQ9Y3A4 280 aaKnown RBP8.39□□□□□ -1.07
PTPN9-205ENST00000568108 BCORQ6W2J9 1755 aa8.38□□□□□ -1.07
PTPN9-205ENST00000568108 NEFMP07197 916 aa8.38□□□□□ -1.07
PTPN9-205ENST00000568108 CRY2Q49AN0 593 aa8.38□□□□□ -1.07
PTPN9-205ENST00000568108 PNISRQ8TF01 805 aaKnown RBP8.38□□□□□ -1.07
PTPN9-205ENST00000568108 RPGRQ92834 1020 aaKnown RBP8.38□□□□□ -1.07
PTPN9-205ENST00000568108 GJA3Q9Y6H8 435 aa8.38□□□□□ -1.07
PTPN9-205ENST00000568108 ARFGEF2Q9Y6D5 1785 aa8.38□□□□□ -1.07
PTPN9-205ENST00000568108 MAP3K15Q6ZN16 1313 aa8.37□□□□□ -1.07
PTPN9-205ENST00000568108 RASSF10A6NK89 507 aa8.37□□□□□ -1.07
PTPN9-205ENST00000568108 MYL6BP14649 208 aa8.37□□□□□ -1.07
PTPN9-205ENST00000568108 GPTP24298 496 aa8.37□□□□□ -1.07
PTPN9-205ENST00000568108 LMOD1P29536 600 aaPredicted RBP8.37□□□□□ -1.07
PTPN9-205ENST00000568108 HOXA10P31260 410 aaPredicted RBP8.37□□□□□ -1.07
PTPN9-205ENST00000568108 LBX1P52954 281 aa8.37□□□□□ -1.07
PTPN9-205ENST00000568108 GRIPAP1Q4V328 841 aa8.37□□□□□ -1.07
PTPN9-205ENST00000568108 SUSD4Q5VX71 490 aa8.37□□□□□ -1.07
PTPN9-205ENST00000568108 KIF6Q6ZMV9 814 aa8.37□□□□□ -1.07
PTPN9-205ENST00000568108 TTLL7Q6ZT98 887 aa8.37□□□□□ -1.07
PTPN9-205ENST00000568108 LARGE2Q8N3Y3 721 aa8.37□□□□□ -1.07
PTPN9-205ENST00000568108 RBM17Q96I25 401 aaKnown RBP8.37□□□□□ -1.07
PTPN9-205ENST00000568108 ABT1Q9ULW3 272 aaKnown RBP8.37□□□□□ -1.07
PTPN9-205ENST00000568108 WDR33Q9C0J8 1336 aaKnown RBP8.36□□□□□ -1.07
PTPN9-205ENST00000568108 TCERG1O14776 1098 aaKnown RBP8.36□□□□□ -1.07
PTPN9-205ENST00000568108 ABCB7O75027 752 aa8.36□□□□□ -1.07
PTPN9-205ENST00000568108 EPS15P42566 896 aa8.36□□□□□ -1.07
PTPN9-205ENST00000568108 EIF4A1P60842 406 aaKnown RBP8.36□□□□□ -1.07
PTPN9-205ENST00000568108 MAP2K1Q02750 393 aaPredicted RBP8.36□□□□□ -1.07
PTPN9-205ENST00000568108 CRAMP1Q96RY5 1269 aa8.36□□□□□ -1.07
PTPN9-205ENST00000568108 ZBTB3Q9H5J0 574 aa8.36□□□□□ -1.07
PTPN9-205ENST00000568108 DDX21Q9NR30 783 aaKnown RBP eCLIP8.36□□□□□ -1.07
PTPN9-205ENST00000568108 ABCC12Q96J65 1359 aa8.35□□□□□ -1.07
PTPN9-205ENST00000568108 FMR1Q06787 632 aaKnown RBP eCLIP8.35□□□□□ -1.07
PTPN9-205ENST00000568108 PPP1R42Q7Z4L9 355 aa8.35□□□□□ -1.07
PTPN9-205ENST00000568108 NIM1KQ8IY84 436 aa8.35□□□□□ -1.07
PTPN9-205ENST00000568108 ZNF34Q8IZ26 560 aa8.35□□□□□ -1.07
PTPN9-205ENST00000568108 NLRP3Q96P20 1036 aa8.35□□□□□ -1.07
PTPN9-205ENST00000568108 THUMPD2Q9BTF0 503 aaKnown RBP8.35□□□□□ -1.07
PTPN9-205ENST00000568108 TMX4Q9H1E5 349 aaPredicted RBP8.35□□□□□ -1.07
PTPN9-205ENST00000568108 SNED1Q8TER0 1413 aa8.35□□□□□ -1.07
PTPN9-205ENST00000568108 UBN2Q6ZU65 1347 aa8.34□□□□□ -1.07
PTPN9-205ENST00000568108 PPEF1O14829 653 aaPredicted RBP8.34□□□□□ -1.07
PTPN9-205ENST00000568108 PPIP5K2O43314 1243 aa8.34□□□□□ -1.07
PTPN9-205ENST00000568108 NTSR2O95665 410 aa8.34□□□□□ -1.07
PTPN9-205ENST00000568108 HSPA8P11142 646 aaKnown RBP8.34□□□□□ -1.07
PTPN9-205ENST00000568108 SCNN1DP51172 638 aa8.34□□□□□ -1.07
PTPN9-205ENST00000568108 NFE2L2Q16236 605 aa8.34□□□□□ -1.07
PTPN9-205ENST00000568108 PARP10Q53GL7 1025 aa8.34□□□□□ -1.07
PTPN9-205ENST00000568108 GIGYF2Q6Y7W6 1299 aaKnown RBP8.34□□□□□ -1.07
PTPN9-205ENST00000568108 C3orf67Q6ZVT6 689 aa8.34□□□□□ -1.07
PTPN9-205ENST00000568108 PAXIP1Q6ZW49 1069 aaPredicted RBP8.34□□□□□ -1.07
PTPN9-205ENST00000568108 USP50Q70EL3 339 aaPredicted RBP8.34□□□□□ -1.07
PTPN9-205ENST00000568108 CAPNS2Q96L46 248 aa8.34□□□□□ -1.07
PTPN9-205ENST00000568108 PLEKHF1Q96S99 279 aa8.34□□□□□ -1.07
PTPN9-205ENST00000568108 ADAMTSL1Q8N6G6 1762 aa8.33□□□□□ -1.08
PTPN9-205ENST00000568108 TRAF5O00463 557 aa8.33□□□□□ -1.08
PTPN9-205ENST00000568108 EIF2S2P20042 333 aaKnown RBP8.33□□□□□ -1.08
PTPN9-205ENST00000568108 ECE1P42892 770 aa8.33□□□□□ -1.08
PTPN9-205ENST00000568108 GRM1Q13255 1194 aa8.33□□□□□ -1.08
PTPN9-205ENST00000568108 AOC3Q16853 763 aa8.33□□□□□ -1.08
PTPN9-205ENST00000568108 SLC10A5Q5PT55 438 aa8.33□□□□□ -1.08
PTPN9-205ENST00000568108 CST9Q5W186 159 aa8.33□□□□□ -1.08
PTPN9-205ENST00000568108 SLC51AQ86UW1 340 aa8.33□□□□□ -1.08
PTPN9-205ENST00000568108 BBXQ8WY36 941 aaPredicted RBP8.33□□□□□ -1.08
PTPN9-205ENST00000568108 ABHD8Q96I13 439 aa8.33□□□□□ -1.08
PTPN9-205ENST00000568108 GPR101Q96P66 508 aaPredicted RBP8.33□□□□□ -1.08
PTPN9-205ENST00000568108 BEGAINQ9BUH8 593 aa8.33□□□□□ -1.08
PTPN9-205ENST00000568108 UTP14AQ9BVJ6 771 aaKnown RBP8.33□□□□□ -1.08
PTPN9-205ENST00000568108 VPS33BQ9H267 617 aa8.33□□□□□ -1.08
PTPN9-205ENST00000568108 PNNQ9H307 717 aaKnown RBP8.33□□□□□ -1.08
PTPN9-205ENST00000568108 ATP6V0A2Q9Y487 856 aa8.33□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms