RNA–Protein interactions for RNA: ENST00000567250.5

SF3B3-208, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 3

Gene SF3B3, Length 1,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-208ENST00000567250 PRR5LQ6MZQ0 368 aa15.49■□□□□ 0.07
SF3B3-208ENST00000567250 DNAAF4Q8WXU2 420 aa15.49■□□□□ 0.07
SF3B3-208ENST00000567250 MYD88Q99836 296 aa15.49■□□□□ 0.07
SF3B3-208ENST00000567250 BCL2L13Q9BXK5 485 aa15.49■□□□□ 0.07
SF3B3-208ENST00000567250 PDZRN3Q9UPQ7 1066 aa15.49■□□□□ 0.07
SF3B3-208ENST00000567250 MYH3P11055 1940 aa15.49■□□□□ 0.07
SF3B3-208ENST00000567250 CACNA1SQ13698 1873 aa15.48■□□□□ 0.07
SF3B3-208ENST00000567250 DCAF8L1A6NGE4 600 aa15.48■□□□□ 0.07
SF3B3-208ENST00000567250 NLRP10Q86W26 655 aa15.48■□□□□ 0.07
SF3B3-208ENST00000567250 SYT17Q9BSW7 474 aa15.48■□□□□ 0.07
SF3B3-208ENST00000567250 ISCA1Q9BUE6 129 aa15.48■□□□□ 0.07
SF3B3-208ENST00000567250 FAM177BA6PVY3 158 aa15.47■□□□□ 0.07
SF3B3-208ENST00000567250 NTSR2O95665 410 aa15.47■□□□□ 0.07
SF3B3-208ENST00000567250 PDE6BP35913 854 aa15.47■□□□□ 0.07
SF3B3-208ENST00000567250 TGFB2P61812 414 aa15.47■□□□□ 0.07
SF3B3-208ENST00000567250 TRIM28Q13263 835 aaKnown RBP15.47■□□□□ 0.07
SF3B3-208ENST00000567250 CCDC191Q8NCU4 936 aa15.47■□□□□ 0.07
SF3B3-208ENST00000567250 UTP14AQ9BVJ6 771 aaKnown RBP15.47■□□□□ 0.07
SF3B3-208ENST00000567250 ARFGEF1Q9Y6D6 1849 aa15.46■□□□□ 0.07
SF3B3-208ENST00000567250 HSP90B1P14625 803 aaKnown RBP15.46■□□□□ 0.07
SF3B3-208ENST00000567250 SUSD4Q5VX71 490 aa15.46■□□□□ 0.07
SF3B3-208ENST00000567250 BRIP1Q9BX63 1249 aa15.46■□□□□ 0.07
SF3B3-208ENST00000567250 CWC25Q9NXE8 425 aaPredicted RBP15.46■□□□□ 0.07
SF3B3-208ENST00000567250 SH3TC1Q8TE82 1336 aa15.45■□□□□ 0.06
SF3B3-208ENST00000567250 ATP5J2-PTCD1G3V325 749 aa15.45■□□□□ 0.06
SF3B3-208ENST00000567250 LINS1Q8NG48 757 aa15.45■□□□□ 0.06
SF3B3-208ENST00000567250 API5Q9BZZ5 524 aaKnown RBP15.45■□□□□ 0.06
SF3B3-208ENST00000567250 TRMT112Q9UI30 125 aaKnown RBP15.45■□□□□ 0.06
SF3B3-208ENST00000567250 ABCC12Q96J65 1359 aa15.45■□□□□ 0.06
SF3B3-208ENST00000567250 IPO8O15397 1037 aaKnown RBP15.44■□□□□ 0.06
SF3B3-208ENST00000567250 NEURL1BA8MQ27 555 aa15.43■□□□□ 0.06
SF3B3-208ENST00000567250 H0YIN7 160 aa15.43■□□□□ 0.06
SF3B3-208ENST00000567250 ERFEQ4G0M1 354 aa15.43■□□□□ 0.06
SF3B3-208ENST00000567250 NUTM1Q86Y26 1132 aa15.43■□□□□ 0.06
SF3B3-208ENST00000567250 NLGN2Q8NFZ4 835 aa15.43■□□□□ 0.06
SF3B3-208ENST00000567250 ARHGAP45Q92619 1136 aa15.43■□□□□ 0.06
SF3B3-208ENST00000567250 F6X3S4 739 aa15.42■□□□□ 0.06
SF3B3-208ENST00000567250 IGKV5-2P06315 115 aa15.42■□□□□ 0.06
SF3B3-208ENST00000567250 SLC4A10Q6U841 1118 aa15.42■□□□□ 0.06
SF3B3-208ENST00000567250 ZBTB38Q8NAP3 1195 aaPredicted RBP15.42■□□□□ 0.06
SF3B3-208ENST00000567250 SRCIN1Q9C0H9 1055 aa15.42■□□□□ 0.06
SF3B3-208ENST00000567250 NOB1Q9ULX3 412 aaKnown RBP15.42■□□□□ 0.06
SF3B3-208ENST00000567250 ZBTB22O15209 634 aa15.41■□□□□ 0.06
SF3B3-208ENST00000567250 ALDH1L1O75891 902 aa15.41■□□□□ 0.06
SF3B3-208ENST00000567250 PCCAP05165 728 aaPredicted RBP15.41■□□□□ 0.06
SF3B3-208ENST00000567250 CWF19L2Q2TBE0 894 aaKnown RBP15.41■□□□□ 0.06
SF3B3-208ENST00000567250 BEND3Q5T5X7 828 aa15.41■□□□□ 0.06
SF3B3-208ENST00000567250 C2CD5Q86YS7 1000 aa15.41■□□□□ 0.06
SF3B3-208ENST00000567250 CCDC24Q8N4L8 307 aa15.41■□□□□ 0.06
SF3B3-208ENST00000567250 NLRP3Q96P20 1036 aa15.41■□□□□ 0.06
SF3B3-208ENST00000567250 CDHR2Q9BYE9 1310 aa15.41■□□□□ 0.06
SF3B3-208ENST00000567250 BCAR3O75815 825 aa15.4■□□□□ 0.06
SF3B3-208ENST00000567250 DPEP1P16444 411 aa15.4■□□□□ 0.06
SF3B3-208ENST00000567250 GCKRQ14397 625 aa15.4■□□□□ 0.06
SF3B3-208ENST00000567250 SLC10A5Q5PT55 438 aa15.4■□□□□ 0.06
SF3B3-208ENST00000567250 ZKSCAN2Q63HK3 967 aa15.4■□□□□ 0.06
SF3B3-208ENST00000567250 FRAT1Q92837 279 aaPredicted RBP15.4■□□□□ 0.06
SF3B3-208ENST00000567250 FOXD4L1Q9NU39 408 aa15.4■□□□□ 0.06
SF3B3-208ENST00000567250 RCAN3Q9UKA8 241 aa15.4■□□□□ 0.06
SF3B3-208ENST00000567250 IRS4O14654 1257 aaPredicted RBP15.39■□□□□ 0.05
SF3B3-208ENST00000567250 CHRNA5P30532 468 aa15.39■□□□□ 0.05
SF3B3-208ENST00000567250 CCT4P50991 539 aaKnown RBP15.39■□□□□ 0.05
SF3B3-208ENST00000567250 ATF7IPQ6VMQ6 1270 aa15.39■□□□□ 0.05
SF3B3-208ENST00000567250 POTEDQ86YR6 584 aa15.39■□□□□ 0.05
SF3B3-208ENST00000567250 RPGRQ92834 1020 aaKnown RBP15.39■□□□□ 0.05
SF3B3-208ENST00000567250 FAM89AQ96GI7 184 aa15.39■□□□□ 0.05
SF3B3-208ENST00000567250 MASTLQ96GX5 879 aa15.39■□□□□ 0.05
SF3B3-208ENST00000567250 PIM2Q9P1W9 311 aa15.39■□□□□ 0.05
SF3B3-208ENST00000567250 A0A0G2JLW4 131 aa15.38■□□□□ 0.05
SF3B3-208ENST00000567250 KLRG2A4D1S0 409 aaPredicted RBP15.38■□□□□ 0.05
SF3B3-208ENST00000567250 SRGNP10124 158 aa15.38■□□□□ 0.05
SF3B3-208ENST00000567250 NPR1P16066 1061 aa15.38■□□□□ 0.05
SF3B3-208ENST00000567250 CRY2Q49AN0 593 aa15.38■□□□□ 0.05
SF3B3-208ENST00000567250 STYK1Q6J9G0 422 aa15.38■□□□□ 0.05
SF3B3-208ENST00000567250 C9orf78Q9NZ63 289 aaPredicted RBP15.38■□□□□ 0.05
SF3B3-208ENST00000567250 ABCC4O15439 1325 aa15.38■□□□□ 0.05
SF3B3-208ENST00000567250 GRM8O00222 908 aa15.37■□□□□ 0.05
SF3B3-208ENST00000567250 MS4A1P11836 297 aa15.37■□□□□ 0.05
SF3B3-208ENST00000567250 TRIM27P14373 513 aa15.37■□□□□ 0.05
SF3B3-208ENST00000567250 RTL5Q5HYW3 569 aaPredicted RBP15.37■□□□□ 0.05
SF3B3-208ENST00000567250 UBE3BQ7Z3V4 1068 aa15.37■□□□□ 0.05
SF3B3-208ENST00000567250 FTSJ3Q8IY81 847 aaKnown RBP15.37■□□□□ 0.05
SF3B3-208ENST00000567250 GOLGA6L2Q8N9W4 650 aaPredicted RBP15.37■□□□□ 0.05
SF3B3-208ENST00000567250 CNKSR1Q969H4 720 aa15.37■□□□□ 0.05
SF3B3-208ENST00000567250 ZNF622Q969S3 477 aaKnown RBP eCLIP15.37■□□□□ 0.054e-20■□□□□ 8.5
SF3B3-208ENST00000567250 PDE8AO60658 829 aa15.36■□□□□ 0.05
SF3B3-208ENST00000567250 HCLS1P14317 486 aaPredicted RBP15.36■□□□□ 0.05
SF3B3-208ENST00000567250 ALDH1B1P30837 517 aa15.36■□□□□ 0.05
SF3B3-208ENST00000567250 DALRD3Q5D0E6 543 aaKnown RBP15.36■□□□□ 0.05
SF3B3-208ENST00000567250 PELP1Q8IZL8 1130 aaKnown RBP15.36■□□□□ 0.05
SF3B3-208ENST00000567250 TTLL6Q8N841 843 aa15.36■□□□□ 0.05
SF3B3-208ENST00000567250 SPEF2Q9C093 1822 aa15.36■□□□□ 0.05
SF3B3-208ENST00000567250 H7C1W4 665 aa15.35■□□□□ 0.05
SF3B3-208ENST00000567250 KCNA3P22001 575 aa15.35■□□□□ 0.05
SF3B3-208ENST00000567250 GPR162Q16538 588 aa15.35■□□□□ 0.05
SF3B3-208ENST00000567250 RBM17Q96I25 401 aaKnown RBP15.35■□□□□ 0.05
SF3B3-208ENST00000567250 BCS1LQ9Y276 419 aa15.35■□□□□ 0.05
SF3B3-208ENST00000567250 SLX4Q8IY92 1834 aa15.35■□□□□ 0.05
SF3B3-208ENST00000567250 LRRC37AA6NMS7 1700 aa15.34■□□□□ 0.05
SF3B3-208ENST00000567250 SF3B3Q15393 1217 aaKnown RBP15.34■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms