RNA–Protein interactions for RNA: ENST00000567223.6

SMPD3-209, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 2

Gene SMPD3, Length 530 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-209ENST00000567223 FAM177BA6PVY3 158 aa24.25■■□□□ 1.47
SMPD3-209ENST00000567223 GPTP24298 496 aa24.25■■□□□ 1.47
SMPD3-209ENST00000567223 CCDC27Q2M243 656 aa24.25■■□□□ 1.47
SMPD3-209ENST00000567223 NUTM1Q86Y26 1132 aa24.25■■□□□ 1.47
SMPD3-209ENST00000567223 RTKN2Q8IZC4 609 aa24.25■■□□□ 1.47
SMPD3-209ENST00000567223 ANXA1P04083 346 aa24.24■■□□□ 1.47
SMPD3-209ENST00000567223 GRIPAP1Q4V328 841 aa24.24■■□□□ 1.47
SMPD3-209ENST00000567223 CC2D2BQ6DHV5 1058 aa24.24■■□□□ 1.47
SMPD3-209ENST00000567223 XAGE3Q8WTP9 111 aa24.24■■□□□ 1.47
SMPD3-209ENST00000567223 CHPF2Q9P2E5 772 aa24.24■■□□□ 1.47
SMPD3-209ENST00000567223 FKBP4Q02790 459 aaKnown RBP eCLIP24.23■■□□□ 1.47
SMPD3-209ENST00000567223 FSTL1Q12841 308 aa24.23■■□□□ 1.47
SMPD3-209ENST00000567223 TCIRG1Q13488 830 aa24.23■■□□□ 1.47
SMPD3-209ENST00000567223 CRAMP1Q96RY5 1269 aa24.23■■□□□ 1.47
SMPD3-209ENST00000567223 DUSP27Q5VZP5 1158 aa24.22■■□□□ 1.47
SMPD3-209ENST00000567223 DPY19L2Q6NUT2 758 aa24.22■■□□□ 1.47
SMPD3-209ENST00000567223 PLBD2Q8NHP8 589 aa24.22■■□□□ 1.47
SMPD3-209ENST00000567223 UTP14AQ9BVJ6 771 aaKnown RBP24.22■■□□□ 1.47
SMPD3-209ENST00000567223 CHMP4AQ9BY43 222 aa24.22■■□□□ 1.47
SMPD3-209ENST00000567223 HYPKQ9NX55 129 aa24.22■■□□□ 1.47
SMPD3-209ENST00000567223 ZNF219Q9P2Y4 722 aaPredicted RBP24.22■■□□□ 1.47
SMPD3-209ENST00000567223 VEGFAP15692 232 aaPredicted RBP24.21■■□□□ 1.47
SMPD3-209ENST00000567223 CCDC184Q52MB2 194 aa24.21■■□□□ 1.47
SMPD3-209ENST00000567223 C16orf71Q8IYS4 520 aaPredicted RBP24.21■■□□□ 1.47
SMPD3-209ENST00000567223 PSMD1Q99460 953 aa24.21■■□□□ 1.47
SMPD3-209ENST00000567223 RRAGCQ9HB90 399 aa24.21■■□□□ 1.47
SMPD3-209ENST00000567223 NLRP10Q86W26 655 aa24.2■■□□□ 1.46
SMPD3-209ENST00000567223 RPGRQ92834 1020 aaKnown RBP24.2■■□□□ 1.46
SMPD3-209ENST00000567223 NLRP3Q96P20 1036 aa24.2■■□□□ 1.46
SMPD3-209ENST00000567223 ANP32CO43423 234 aa24.19■■□□□ 1.46
SMPD3-209ENST00000567223 NECTIN2Q92692 538 aa24.19■■□□□ 1.46
SMPD3-209ENST00000567223 APLP1P51693 650 aa24.18■■□□□ 1.46
SMPD3-209ENST00000567223 AIMP1Q12904 312 aaKnown RBP24.18■■□□□ 1.46
SMPD3-209ENST00000567223 ANKRD13DQ6ZTN6 518 aa24.18■■□□□ 1.46
SMPD3-209ENST00000567223 RBM17Q96I25 401 aaKnown RBP24.18■■□□□ 1.46
SMPD3-209ENST00000567223 POTECB2RU33 542 aa24.16■■□□□ 1.46
SMPD3-209ENST00000567223 TRIM28Q13263 835 aaKnown RBP24.16■■□□□ 1.46
SMPD3-209ENST00000567223 ISCA1Q9BUE6 129 aa24.16■■□□□ 1.46
SMPD3-209ENST00000567223 IL16Q14005 1332 aa24.15■■□□□ 1.46
SMPD3-209ENST00000567223 SH3TC1Q8TE82 1336 aa24.15■■□□□ 1.46
SMPD3-209ENST00000567223 SMC1BQ8NDV3 1235 aa24.15■■□□□ 1.46
SMPD3-209ENST00000567223 C3orf67Q6ZVT6 689 aa24.14■■□□□ 1.45
SMPD3-209ENST00000567223 WWC1Q8IX03 1113 aa24.14■■□□□ 1.45
SMPD3-209ENST00000567223 L3MBTL3Q96JM7 780 aaPredicted RBP24.14■■□□□ 1.45
SMPD3-209ENST00000567223 MRS2Q9HD23 443 aa24.14■■□□□ 1.45
SMPD3-209ENST00000567223 LAMB2P55268 1798 aa24.13■■□□□ 1.45
SMPD3-209ENST00000567223 IARSP41252 1262 aaKnown RBP24.12■■□□□ 1.45
SMPD3-209ENST00000567223 OLFM4Q6UX06 510 aa24.12■■□□□ 1.45
SMPD3-209ENST00000567223 VPS33BQ9H267 617 aa24.12■■□□□ 1.45
SMPD3-209ENST00000567223 TRMT112Q9UI30 125 aaKnown RBP24.12■■□□□ 1.45
SMPD3-209ENST00000567223 FZD9O00144 591 aa24.11■■□□□ 1.45
SMPD3-209ENST00000567223 PPEF1O14829 653 aaPredicted RBP24.11■■□□□ 1.45
SMPD3-209ENST00000567223 C8orf58Q8NAV2 365 aa24.11■■□□□ 1.45
SMPD3-209ENST00000567223 ZNF277Q9NRM2 450 aaPredicted RBP24.11■■□□□ 1.45
SMPD3-209ENST00000567223 SCN4AP35499 1836 aa24.1■■□□□ 1.45
SMPD3-209ENST00000567223 BBOX1O75936 387 aa24.1■■□□□ 1.45
SMPD3-209ENST00000567223 CCDC30Q5VVM6 783 aa24.1■■□□□ 1.45
SMPD3-209ENST00000567223 SYNE4Q8N205 404 aa24.1■■□□□ 1.45
SMPD3-209ENST00000567223 ATP6V0A2Q9Y487 856 aa24.1■■□□□ 1.45
SMPD3-209ENST00000567223 DDX60Q8IY21 1712 aaKnown RBP24.1■■□□□ 1.45
SMPD3-209ENST00000567223 ABCC4O15439 1325 aa24.1■■□□□ 1.45
SMPD3-209ENST00000567223 IQCA1LA6NCM1 817 aa24.09■■□□□ 1.45
SMPD3-209ENST00000567223 GOLGA2Q08379 1002 aa24.09■■□□□ 1.45
SMPD3-209ENST00000567223 DDNO94850 711 aaPredicted RBP24.08■■□□□ 1.45
SMPD3-209ENST00000567223 TMC4Q7Z404 712 aa24.08■■□□□ 1.45
SMPD3-209ENST00000567223 RTFDC1Q9BY42 306 aaPredicted RBP24.07■■□□□ 1.44
SMPD3-209ENST00000567223 HCLS1P14317 486 aaPredicted RBP24.06■■□□□ 1.44
SMPD3-209ENST00000567223 SF3B3Q15393 1217 aaKnown RBP24.06■■□□□ 1.44
SMPD3-209ENST00000567223 SP8Q8IXZ3 490 aa24.06■■□□□ 1.44
SMPD3-209ENST00000567223 DNAJC5GQ8N7S2 189 aa24.06■■□□□ 1.44
SMPD3-209ENST00000567223 TMX4Q9H1E5 349 aaPredicted RBP24.06■■□□□ 1.44
SMPD3-209ENST00000567223 PHAXQ9H814 394 aaKnown RBP24.06■■□□□ 1.44
SMPD3-209ENST00000567223 LRRC37AA6NMS7 1700 aa24.06■■□□□ 1.44
SMPD3-209ENST00000567223 ELL2O00472 640 aaPredicted RBP24.05■■□□□ 1.44
SMPD3-209ENST00000567223 GRAPQ13588 217 aa24.05■■□□□ 1.44
SMPD3-209ENST00000567223 DDX46Q7L014 1031 aaKnown RBP24.05■■□□□ 1.44
SMPD3-209ENST00000567223 RIC3Q7Z5B4 369 aa24.05■■□□□ 1.44
SMPD3-209ENST00000567223 WDR63Q8IWG1 891 aa24.05■■□□□ 1.44
SMPD3-209ENST00000567223 GPC2Q8N158 579 aa24.05■■□□□ 1.44
SMPD3-209ENST00000567223 GRAPLQ8TC17 118 aaPredicted RBP24.05■■□□□ 1.44
SMPD3-209ENST00000567223 JDP2Q8WYK2 163 aa24.05■■□□□ 1.44
SMPD3-209ENST00000567223 COL4A5P29400 1685 aa24.05■■□□□ 1.44
SMPD3-209ENST00000567223 DDX58O95786 925 aaKnown RBP24.04■■□□□ 1.44
SMPD3-209ENST00000567223 HSP90B1P14625 803 aaKnown RBP24.04■■□□□ 1.44
SMPD3-209ENST00000567223 TSPYL6Q8N831 410 aa24.04■■□□□ 1.44
SMPD3-209ENST00000567223 CCDC191Q8NCU4 936 aa24.04■■□□□ 1.44
SMPD3-209ENST00000567223 ZNF541Q9H0D2 1346 aa24.04■■□□□ 1.44
SMPD3-209ENST00000567223 ZBTB38Q8NAP3 1195 aaPredicted RBP24.03■■□□□ 1.44
SMPD3-209ENST00000567223 SUPT20HQ8NEM7 779 aa24.03■■□□□ 1.44
SMPD3-209ENST00000567223 TSR2Q969E8 191 aaKnown RBP24.03■■□□□ 1.44
SMPD3-209ENST00000567223 ATP5J2-PTCD1G3V325 749 aa24.02■■□□□ 1.44
SMPD3-209ENST00000567223 FAM89AQ96GI7 184 aa24.02■■□□□ 1.44
SMPD3-209ENST00000567223 TWISTNBQ3B726 338 aaPredicted RBP24.01■■□□□ 1.43
SMPD3-209ENST00000567223 METTL22Q9BUU2 404 aaPredicted RBP24.01■■□□□ 1.43
SMPD3-209ENST00000567223 TAF1DQ9H5J8 278 aaPredicted RBP24.01■■□□□ 1.43
SMPD3-209ENST00000567223 ADAMTSL1Q8N6G6 1762 aa24.01■■□□□ 1.43
SMPD3-209ENST00000567223 STK31Q9BXU1 1019 aa24■■□□□ 1.43
SMPD3-209ENST00000567223 IRS4O14654 1257 aaPredicted RBP23.99■■□□□ 1.43
SMPD3-209ENST00000567223 LDHDQ86WU2 507 aa23.99■■□□□ 1.43
SMPD3-209ENST00000567223 LARGE2Q8N3Y3 721 aa23.99■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms