RNA–Protein interactions for RNA: ENST00000565453.1

CDH3-204, Transcript of cadherin 3, humanhuman

TSL 4

Gene CDH3, Length 532 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-204ENST00000565453 VEGFAP15692 232 aaPredicted RBP20.43■□□□□ 0.86
CDH3-204ENST00000565453 FKBP4Q02790 459 aaKnown RBP eCLIP20.43■□□□□ 0.86
CDH3-204ENST00000565453 PPP1R42Q7Z4L9 355 aa20.43■□□□□ 0.86
CDH3-204ENST00000565453 MBIPQ9NS73 344 aa20.43■□□□□ 0.86
CDH3-204ENST00000565453 CHPF2Q9P2E5 772 aa20.43■□□□□ 0.86
CDH3-204ENST00000565453 APLP1P51693 650 aa20.42■□□□□ 0.86
CDH3-204ENST00000565453 DPY19L2Q6NUT2 758 aa20.42■□□□□ 0.86
CDH3-204ENST00000565453 C3orf67Q6ZVT6 689 aa20.42■□□□□ 0.86
CDH3-204ENST00000565453 AIMP1Q12904 312 aaKnown RBP20.41■□□□□ 0.86
CDH3-204ENST00000565453 SLC10A5Q5PT55 438 aa20.41■□□□□ 0.86
CDH3-204ENST00000565453 HDGFL1Q5TGJ6 251 aa20.41■□□□□ 0.86
CDH3-204ENST00000565453 RTKN2Q8IZC4 609 aa20.41■□□□□ 0.86
CDH3-204ENST00000565453 HSP90AB3PQ58FF7 597 aa20.4■□□□□ 0.86
CDH3-204ENST00000565453 DUSP27Q5VZP5 1158 aa20.4■□□□□ 0.86
CDH3-204ENST00000565453 NLRP10Q86W26 655 aa20.4■□□□□ 0.86
CDH3-204ENST00000565453 CRAMP1Q96RY5 1269 aa20.4■□□□□ 0.86
CDH3-204ENST00000565453 UTP14AQ9BVJ6 771 aaKnown RBP20.4■□□□□ 0.86
CDH3-204ENST00000565453 IFT57Q9NWB7 429 aa20.4■□□□□ 0.86
CDH3-204ENST00000565453 RNF123Q5XPI4 1314 aa20.39■□□□□ 0.85
CDH3-204ENST00000565453 TCIRG1Q13488 830 aa20.39■□□□□ 0.85
CDH3-204ENST00000565453 SMC1BQ8NDV3 1235 aa20.39■□□□□ 0.85
CDH3-204ENST00000565453 RPGRQ92834 1020 aaKnown RBP20.39■□□□□ 0.85
CDH3-204ENST00000565453 ZNF277Q9NRM2 450 aaPredicted RBP20.39■□□□□ 0.85
CDH3-204ENST00000565453 DDNO94850 711 aaPredicted RBP20.38■□□□□ 0.85
CDH3-204ENST00000565453 DBF4Q9UBU7 674 aaPredicted RBP20.38■□□□□ 0.85
CDH3-204ENST00000565453 GNAI1P63096 354 aa20.37■□□□□ 0.85
CDH3-204ENST00000565453 CC2D2BQ6DHV5 1058 aa20.37■□□□□ 0.85
CDH3-204ENST00000565453 SLC51AQ86UW1 340 aa20.37■□□□□ 0.85
CDH3-204ENST00000565453 SYNE4Q8N205 404 aa20.37■□□□□ 0.85
CDH3-204ENST00000565453 DNAJC5GQ8N7S2 189 aa20.37■□□□□ 0.85
CDH3-204ENST00000565453 PLBD2Q8NHP8 589 aa20.37■□□□□ 0.85
CDH3-204ENST00000565453 RBM17Q96I25 401 aaKnown RBP20.37■□□□□ 0.85
CDH3-204ENST00000565453 NLRP3Q96P20 1036 aa20.37■□□□□ 0.85
CDH3-204ENST00000565453 PSMD1Q99460 953 aa20.37■□□□□ 0.85
CDH3-204ENST00000565453 CALD1Q05682 793 aaKnown RBP20.36■□□□□ 0.85
CDH3-204ENST00000565453 LAMB2P55268 1798 aa20.36■□□□□ 0.85
CDH3-204ENST00000565453 CEP350Q5VT06 3117 aa20.35■□□□□ 0.85
CDH3-204ENST00000565453 ZNF316A6NFI3 1004 aaPredicted RBP20.35■□□□□ 0.85
CDH3-204ENST00000565453 IARSP41252 1262 aaKnown RBP20.35■□□□□ 0.85
CDH3-204ENST00000565453 HYPKQ9NX55 129 aa20.35■□□□□ 0.85
CDH3-204ENST00000565453 ZNF541Q9H0D2 1346 aa20.34■□□□□ 0.85
CDH3-204ENST00000565453 PPEF1O14829 653 aaPredicted RBP20.34■□□□□ 0.85
CDH3-204ENST00000565453 ANKRD13DQ6ZTN6 518 aa20.34■□□□□ 0.85
CDH3-204ENST00000565453 L3MBTL3Q96JM7 780 aaPredicted RBP20.34■□□□□ 0.85
CDH3-204ENST00000565453 ISCA1Q9BUE6 129 aa20.34■□□□□ 0.85
CDH3-204ENST00000565453 COL4A5P29400 1685 aa20.34■□□□□ 0.85
CDH3-204ENST00000565453 HCLS1P14317 486 aaPredicted RBP20.33■□□□□ 0.85
CDH3-204ENST00000565453 TRMT112Q9UI30 125 aaKnown RBP20.33■□□□□ 0.85
CDH3-204ENST00000565453 ABCC4O15439 1325 aa20.32■□□□□ 0.84
CDH3-204ENST00000565453 SH3TC1Q8TE82 1336 aa20.32■□□□□ 0.84
CDH3-204ENST00000565453 FZD9O00144 591 aa20.32■□□□□ 0.84
CDH3-204ENST00000565453 HTRA3P83110 453 aa20.32■□□□□ 0.84
CDH3-204ENST00000565453 GRIPAP1Q4V328 841 aa20.32■□□□□ 0.84
CDH3-204ENST00000565453 C8orf58Q8NAV2 365 aa20.32■□□□□ 0.84
CDH3-204ENST00000565453 ELL2O00472 640 aaPredicted RBP20.31■□□□□ 0.84
CDH3-204ENST00000565453 CCDC27Q2M243 656 aa20.31■□□□□ 0.84
CDH3-204ENST00000565453 DDX60Q8IY21 1712 aaKnown RBP20.3■□□□□ 0.84
CDH3-204ENST00000565453 TCERG1O14776 1098 aaKnown RBP20.3■□□□□ 0.84
CDH3-204ENST00000565453 PHAXQ9H814 394 aaKnown RBP20.3■□□□□ 0.84
CDH3-204ENST00000565453 ATP6V0A2Q9Y487 856 aa20.3■□□□□ 0.84
CDH3-204ENST00000565453 SCN4AP35499 1836 aa20.3■□□□□ 0.84
CDH3-204ENST00000565453 ATP5J2-PTCD1G3V325 749 aa20.29■□□□□ 0.84
CDH3-204ENST00000565453 POTEIP0CG38 1075 aa20.29■□□□□ 0.84
CDH3-204ENST00000565453 POTEJP0CG39 1038 aa20.29■□□□□ 0.84
CDH3-204ENST00000565453 TRIM28Q13263 835 aaKnown RBP20.29■□□□□ 0.84
CDH3-204ENST00000565453 IQCA1LA6NCM1 817 aa20.28■□□□□ 0.84
CDH3-204ENST00000565453 NCBP3Q53F19 620 aaKnown RBP20.28■□□□□ 0.84
CDH3-204ENST00000565453 WWC1Q8IX03 1113 aa20.28■□□□□ 0.84
CDH3-204ENST00000565453 ZNF428Q96B54 188 aa20.28■□□□□ 0.84
CDH3-204ENST00000565453 TAF1DQ9H5J8 278 aaPredicted RBP20.28■□□□□ 0.84
CDH3-204ENST00000565453 BBOX1O75936 387 aa20.27■□□□□ 0.84
CDH3-204ENST00000565453 TSPYL6Q8N831 410 aa20.27■□□□□ 0.84
CDH3-204ENST00000565453 JDP2Q8WYK2 163 aa20.27■□□□□ 0.84
CDH3-204ENST00000565453 MRS2Q9HD23 443 aa20.27■□□□□ 0.84
CDH3-204ENST00000565453 ANP32CO43423 234 aa20.26■□□□□ 0.83
CDH3-204ENST00000565453 GRAPQ13588 217 aa20.26■□□□□ 0.83
CDH3-204ENST00000565453 CHADLQ6NUI6 762 aa20.26■□□□□ 0.83
CDH3-204ENST00000565453 DDX46Q7L014 1031 aaKnown RBP20.26■□□□□ 0.83
CDH3-204ENST00000565453 SP8Q8IXZ3 490 aa20.26■□□□□ 0.83
CDH3-204ENST00000565453 GRAPLQ8TC17 118 aaPredicted RBP20.26■□□□□ 0.83
CDH3-204ENST00000565453 TSR2Q969E8 191 aaKnown RBP20.26■□□□□ 0.83
CDH3-204ENST00000565453 KLRG1Q96E93 195 aa20.26■□□□□ 0.83
CDH3-204ENST00000565453 FAM89AQ96GI7 184 aa20.26■□□□□ 0.83
CDH3-204ENST00000565453 RTFDC1Q9BY42 306 aaPredicted RBP20.26■□□□□ 0.83
CDH3-204ENST00000565453 GOLGA2Q08379 1002 aa20.25■□□□□ 0.83
CDH3-204ENST00000565453 SF3B3Q15393 1217 aaKnown RBP20.25■□□□□ 0.83
CDH3-204ENST00000565453 RIC3Q7Z5B4 369 aa20.25■□□□□ 0.83
CDH3-204ENST00000565453 GPC2Q8N158 579 aa20.25■□□□□ 0.83
CDH3-204ENST00000565453 LARGE2Q8N3Y3 721 aa20.25■□□□□ 0.83
CDH3-204ENST00000565453 ADAMTSL1Q8N6G6 1762 aa20.25■□□□□ 0.83
CDH3-204ENST00000565453 TAF1P21675 1872 aa20.24■□□□□ 0.83
CDH3-204ENST00000565453 CCDC30Q5VVM6 783 aa20.24■□□□□ 0.83
CDH3-204ENST00000565453 VPS33BQ9H267 617 aa20.24■□□□□ 0.83
CDH3-204ENST00000565453 HACL1Q9UJ83 578 aa20.24■□□□□ 0.83
CDH3-204ENST00000565453 LRRC37AA6NMS7 1700 aa20.24■□□□□ 0.83
CDH3-204ENST00000565453 IL16Q14005 1332 aa20.24■□□□□ 0.83
CDH3-204ENST00000565453 COL4A1P02462 1669 aa20.23■□□□□ 0.83
CDH3-204ENST00000565453 EIF6P56537 245 aaKnown RBP20.23■□□□□ 0.83
CDH3-204ENST00000565453 LDHDQ86WU2 507 aa20.23■□□□□ 0.83
CDH3-204ENST00000565453 JMYQ8N9B5 988 aa20.23■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms