RNA–Protein interactions for RNA: ENST00000563739.5

SF3B3-204, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 1,105 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-204ENST00000563739 RTKN2Q8IZC4 609 aa14.01□□□□□ -0.17
SF3B3-204ENST00000563739 TSKSQ9UJT2 592 aa14.01□□□□□ -0.17
SF3B3-204ENST00000563739 CLEC11AQ9Y240 323 aa14.01□□□□□ -0.17
SF3B3-204ENST00000563739 LRRC37AA6NMS7 1700 aa14.01□□□□□ -0.17
SF3B3-204ENST00000563739 TAF1P21675 1872 aa14□□□□□ -0.17
SF3B3-204ENST00000563739 FAM177BA6PVY3 158 aa14□□□□□ -0.17
SF3B3-204ENST00000563739 U2SURPO15042 1029 aaKnown RBP14□□□□□ -0.17
SF3B3-204ENST00000563739 AOC2O75106 756 aa14□□□□□ -0.17
SF3B3-204ENST00000563739 MAP2K1Q02750 393 aaPredicted RBP14□□□□□ -0.17
SF3B3-204ENST00000563739 MLLT1Q03111 559 aaPredicted RBP14□□□□□ -0.17
SF3B3-204ENST00000563739 MCM10Q7L590 875 aa14□□□□□ -0.17
SF3B3-204ENST00000563739 NUTM1Q86Y26 1132 aa14□□□□□ -0.17
SF3B3-204ENST00000563739 TLL2Q9Y6L7 1015 aa14□□□□□ -0.17
SF3B3-204ENST00000563739 ANKRD36CQ5JPF3 1778 aa14□□□□□ -0.17
SF3B3-204ENST00000563739 IBTKQ9P2D0 1353 aaPredicted RBP13.99□□□□□ -0.17
SF3B3-204ENST00000563739 DCTN1Q14203 1278 aa13.99□□□□□ -0.17
SF3B3-204ENST00000563739 ABT1Q9ULW3 272 aaKnown RBP13.99□□□□□ -0.17
SF3B3-204ENST00000563739 PDE4DIPQ5VU43 2346 aa13.99□□□□□ -0.17
SF3B3-204ENST00000563739 NPHP1O15259 732 aa13.98□□□□□ -0.17
SF3B3-204ENST00000563739 SNRPA1P09661 255 aaKnown RBP13.98□□□□□ -0.17
SF3B3-204ENST00000563739 HOXA10P31260 410 aaPredicted RBP13.98□□□□□ -0.17
SF3B3-204ENST00000563739 TPTE2Q6XPS3 522 aa13.97□□□□□ -0.17
SF3B3-204ENST00000563739 TTLL7Q6ZT98 887 aa13.97□□□□□ -0.17
SF3B3-204ENST00000563739 ZIC5Q96T25 663 aa13.97□□□□□ -0.17
SF3B3-204ENST00000563739 ZNF652Q9Y2D9 606 aa13.97□□□□□ -0.17
SF3B3-204ENST00000563739 GJA3Q9Y6H8 435 aa13.97□□□□□ -0.17
SF3B3-204ENST00000563739 NTSR2O95665 410 aa13.96□□□□□ -0.17
SF3B3-204ENST00000563739 GPR101Q96P66 508 aaPredicted RBP13.96□□□□□ -0.17
SF3B3-204ENST00000563739 MCOLN1Q9GZU1 580 aa13.96□□□□□ -0.17
SF3B3-204ENST00000563739 LRP10Q7Z4F1 713 aa13.95□□□□□ -0.18
SF3B3-204ENST00000563739 SAPCD2Q86UD0 394 aa13.95□□□□□ -0.18
SF3B3-204ENST00000563739 DDX60Q8IY21 1712 aaKnown RBP13.95□□□□□ -0.18
SF3B3-204ENST00000563739 MAP3K15Q6ZN16 1313 aa13.94□□□□□ -0.18
SF3B3-204ENST00000563739 SHTN1A0MZ66 631 aa13.94□□□□□ -0.18
SF3B3-204ENST00000563739 CCDC85CA6NKD9 419 aa13.94□□□□□ -0.18
SF3B3-204ENST00000563739 ALDH1B1P30837 517 aa13.94□□□□□ -0.18
SF3B3-204ENST00000563739 HIRAP54198 1017 aaPredicted RBP13.94□□□□□ -0.18
SF3B3-204ENST00000563739 SUSD4Q5VX71 490 aa13.94□□□□□ -0.18
SF3B3-204ENST00000563739 USP50Q70EL3 339 aaPredicted RBP13.94□□□□□ -0.18
SF3B3-204ENST00000563739 GPRC5DQ9NZD1 345 aa13.94□□□□□ -0.18
SF3B3-204ENST00000563739 PGAP2Q9UHJ9 254 aa13.94□□□□□ -0.18
SF3B3-204ENST00000563739 POLR2AP24928 1970 aaKnown RBP13.93□□□□□ -0.18
SF3B3-204ENST00000563739 DLK2Q6UY11 383 aa13.93□□□□□ -0.18
SF3B3-204ENST00000563739 GLIS2Q9BZE0 524 aaPredicted RBP13.93□□□□□ -0.18
SF3B3-204ENST00000563739 MIS18AQ9NYP9 233 aa13.93□□□□□ -0.18
SF3B3-204ENST00000563739 PPEF1O14829 653 aaPredicted RBP13.92□□□□□ -0.18
SF3B3-204ENST00000563739 ECE1P42892 770 aa13.92□□□□□ -0.18
SF3B3-204ENST00000563739 EIF6P56537 245 aaKnown RBP13.92□□□□□ -0.18
SF3B3-204ENST00000563739 CXCL9Q07325 125 aa13.92□□□□□ -0.18
SF3B3-204ENST00000563739 GRM1Q13255 1194 aa13.92□□□□□ -0.18
SF3B3-204ENST00000563739 AOC3Q16853 763 aa13.92□□□□□ -0.18
SF3B3-204ENST00000563739 CC2D2BQ6DHV5 1058 aa13.92□□□□□ -0.18
SF3B3-204ENST00000563739 ZNF34Q8IZ26 560 aa13.92□□□□□ -0.18
SF3B3-204ENST00000563739 LARGE2Q8N3Y3 721 aa13.92□□□□□ -0.18
SF3B3-204ENST00000563739 TRPM4Q8TD43 1214 aa13.92□□□□□ -0.18
SF3B3-204ENST00000563739 JDP2Q8WYK2 163 aa13.92□□□□□ -0.18
SF3B3-204ENST00000563739 CRAMP1Q96RY5 1269 aa13.92□□□□□ -0.18
SF3B3-204ENST00000563739 SCN9AQ15858 1988 aa13.92□□□□□ -0.18
SF3B3-204ENST00000563739 ERVV-1B6SEH8 477 aa13.91□□□□□ -0.18
SF3B3-204ENST00000563739 GPTP24298 496 aa13.91□□□□□ -0.18
SF3B3-204ENST00000563739 MAP2K2P36507 400 aa13.91□□□□□ -0.18
SF3B3-204ENST00000563739 RTFDC1Q9BY42 306 aaPredicted RBP13.91□□□□□ -0.18
SF3B3-204ENST00000563739 PCGF6Q9BYE7 350 aa13.91□□□□□ -0.18
SF3B3-204ENST00000563739 ABCC4O15439 1325 aa13.9□□□□□ -0.18
SF3B3-204ENST00000563739 ZNF646O15015 1829 aaPredicted RBP13.9□□□□□ -0.18
SF3B3-204ENST00000563739 LMOD1P29536 600 aaPredicted RBP13.9□□□□□ -0.18
SF3B3-204ENST00000563739 GMPSP49915 693 aaPredicted RBP13.9□□□□□ -0.18
SF3B3-204ENST00000563739 CNGB1Q14028 1251 aaPredicted RBP13.9□□□□□ -0.18
SF3B3-204ENST00000563739 PAXIP1Q6ZW49 1069 aaPredicted RBP13.9□□□□□ -0.18
SF3B3-204ENST00000563739 NPM2Q86SE8 214 aaKnown RBP13.9□□□□□ -0.18
SF3B3-204ENST00000563739 HHIPL1Q96JK4 782 aa13.9□□□□□ -0.18
SF3B3-204ENST00000563739 ADARB2Q9NS39 739 aaKnown RBP13.9□□□□□ -0.18
SF3B3-204ENST00000563739 YDJCA8MPS7 323 aa13.89□□□□□ -0.19
SF3B3-204ENST00000563739 TCERG1O14776 1098 aaKnown RBP13.89□□□□□ -0.19
SF3B3-204ENST00000563739 PPIP5K2O43314 1243 aa13.89□□□□□ -0.19
SF3B3-204ENST00000563739 CELF2O95319 508 aaKnown RBP13.89□□□□□ -0.19
SF3B3-204ENST00000563739 BRPF1P55201 1214 aaPredicted RBP13.89□□□□□ -0.19
SF3B3-204ENST00000563739 EIF4A1P60842 406 aaKnown RBP13.89□□□□□ -0.19
SF3B3-204ENST00000563739 CIAPIN1Q6FI81 312 aa13.89□□□□□ -0.19
SF3B3-204ENST00000563739 NYXQ9GZU5 481 aa13.89□□□□□ -0.19
SF3B3-204ENST00000563739 ZBTB3Q9H5J0 574 aa13.89□□□□□ -0.19
SF3B3-204ENST00000563739 FAM155AB1AL88 458 aaPredicted RBP13.88□□□□□ -0.19
SF3B3-204ENST00000563739 EGFRP00533 1210 aa13.88□□□□□ -0.19
SF3B3-204ENST00000563739 PDIA6Q15084 440 aa13.88□□□□□ -0.19
SF3B3-204ENST00000563739 NIM1KQ8IY84 436 aa13.88□□□□□ -0.19
SF3B3-204ENST00000563739 NGEFQ8N5V2 710 aa13.88□□□□□ -0.19
SF3B3-204ENST00000563739 ATP6V0A2Q9Y487 856 aa13.88□□□□□ -0.19
SF3B3-204ENST00000563739 PSME4Q14997 1843 aa13.87□□□□□ -0.19
SF3B3-204ENST00000563739 HTATSF1O43719 755 aaKnown RBP13.87□□□□□ -0.19
SF3B3-204ENST00000563739 PPP2R1AP30153 589 aa13.87□□□□□ -0.19
SF3B3-204ENST00000563739 TAF7Q15545 349 aaPredicted RBP13.87□□□□□ -0.19
SF3B3-204ENST00000563739 GIGYF2Q6Y7W6 1299 aaKnown RBP13.87□□□□□ -0.19
SF3B3-204ENST00000563739 RPGRQ92834 1020 aaKnown RBP13.87□□□□□ -0.19
SF3B3-204ENST00000563739 THUMPD2Q9BTF0 503 aaKnown RBP13.87□□□□□ -0.19
SF3B3-204ENST00000563739 CDHR2Q9BYE9 1310 aa13.87□□□□□ -0.19
SF3B3-204ENST00000563739 HTTP42858 3142 aa13.86□□□□□ -0.19
SF3B3-204ENST00000563739 KIAA2012Q0VF49 1180 aa13.86□□□□□ -0.19
SF3B3-204ENST00000563739 PROSER3Q2NL68 480 aa13.86□□□□□ -0.19
SF3B3-204ENST00000563739 ZNRF3Q9ULT6 936 aa13.86□□□□□ -0.19
SF3B3-204ENST00000563739 U2AF1L5P0DN76 240 aaPredicted RBP13.85□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 96.6 ms