RNA–Protein interactions for RNA: ENST00000563092.1

CKLF-208, Transcript of chemokine like factor, human

TSL 3

Gene CKLF, Length 365 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CKLF-208	ENST00000563092	WDR33	Q9C0J8	1336 aa	Known RBP	11.26	□□□□□ -0.61
CKLF-208	ENST00000563092	CACNA1S	Q13698	1873 aa		11.25	□□□□□ -0.61
CKLF-208	ENST00000563092	COL4A5	P29400	1685 aa		11.25	□□□□□ -0.61
CKLF-208	ENST00000563092	KCNQ3	O43525	872 aa		11.25	□□□□□ -0.61
CKLF-208	ENST00000563092	IARS	P41252	1262 aa	Known RBP	11.25	□□□□□ -0.61
CKLF-208	ENST00000563092	CRY2	Q49AN0	593 aa		11.25	□□□□□ -0.61
CKLF-208	ENST00000563092	EAPP	Q56P03	285 aa	Predicted RBP	11.25	□□□□□ -0.61
CKLF-208	ENST00000563092	MAP1S	Q66K74	1059 aa	Predicted RBP	11.25	□□□□□ -0.61
CKLF-208	ENST00000563092	OLFM4	Q6UX06	510 aa		11.25	□□□□□ -0.61
CKLF-208	ENST00000563092	NBPF5P	Q86XG9	351 aa	Predicted RBP	11.25	□□□□□ -0.61
CKLF-208	ENST00000563092	PSMD1	Q99460	953 aa		11.25	□□□□□ -0.61
CKLF-208	ENST00000563092	LTBP1	Q14766	1721 aa		11.25	□□□□□ -0.61
CKLF-208	ENST00000563092	FAM161A	Q3B820	660 aa		11.24	□□□□□ -0.61
CKLF-208	ENST00000563092	DDX21	Q9NR30	783 aa	Known RBP eCLIP	11.24	□□□□□ -0.61
CKLF-208	ENST00000563092	ZNF330	Q9Y3S2	320 aa	Predicted RBP	11.24	□□□□□ -0.61
CKLF-208	ENST00000563092	RNF123	Q5XPI4	1314 aa		11.24	□□□□□ -0.61
CKLF-208	ENST00000563092	NPC1L1	Q9UHC9	1359 aa		11.24	□□□□□ -0.61
CKLF-208	ENST00000563092	NBPF26	B4DH59	902 aa		11.23	□□□□□ -0.61
CKLF-208	ENST00000563092	NBPF10	Q6P3W6	841 aa	Known RBP	11.23	□□□□□ -0.61
CKLF-208	ENST00000563092	TPTE2	Q6XPS3	522 aa		11.23	□□□□□ -0.61
CKLF-208	ENST00000563092	SYNE4	Q8N205	404 aa		11.23	□□□□□ -0.61
CKLF-208	ENST00000563092	NBPF15	Q8N660	670 aa		11.23	□□□□□ -0.61
CKLF-208	ENST00000563092	ZNF652	Q9Y2D9	606 aa		11.23	□□□□□ -0.61
CKLF-208	ENST00000563092	PRAMEF22	A3QJZ6	481 aa		11.22	□□□□□ -0.61
CKLF-208	ENST00000563092	BTBD11	A6QL63	1104 aa		11.22	□□□□□ -0.61
CKLF-208	ENST00000563092	NPHP1	O15259	732 aa		11.22	□□□□□ -0.61
CKLF-208	ENST00000563092	ALDH1B1	P30837	517 aa		11.22	□□□□□ -0.61
CKLF-208	ENST00000563092	TRIM26	Q12899	539 aa	Predicted RBP	11.22	□□□□□ -0.61
CKLF-208	ENST00000563092	KIF7	Q2M1P5	1343 aa		11.22	□□□□□ -0.61
CKLF-208	ENST00000563092	RIC1	Q4ADV7	1423 aa		11.22	□□□□□ -0.61
CKLF-208	ENST00000563092	CST9	Q5W186	159 aa		11.22	□□□□□ -0.61
CKLF-208	ENST00000563092	PHACTR3	Q96KR7	559 aa		11.22	□□□□□ -0.61
CKLF-208	ENST00000563092	SNRPA1	P09661	255 aa	Known RBP	11.21	□□□□□ -0.61
CKLF-208	ENST00000563092	HOXA10	P31260	410 aa	Predicted RBP	11.21	□□□□□ -0.61
CKLF-208	ENST00000563092	PIP4K2A	P48426	406 aa	Predicted RBP	11.21	□□□□□ -0.61
CKLF-208	ENST00000563092	SCNN1D	P51172	638 aa		11.21	□□□□□ -0.61
CKLF-208	ENST00000563092	CC2D2B	Q6DHV5	1058 aa		11.21	□□□□□ -0.61
CKLF-208	ENST00000563092	NPM2	Q86SE8	214 aa	Known RBP	11.21	□□□□□ -0.61
CKLF-208	ENST00000563092	MS4A3	Q96HJ5	214 aa		11.21	□□□□□ -0.61
CKLF-208	ENST00000563092	CAPNS2	Q96L46	248 aa		11.21	□□□□□ -0.61
CKLF-208	ENST00000563092	PCDH10	Q9P2E7	1040 aa		11.21	□□□□□ -0.61
CKLF-208	ENST00000563092	NIP7	Q9Y221	180 aa	Known RBP eCLIP	11.21	□□□□□ -0.61
CKLF-208	ENST00000563092	FMR1	Q06787	632 aa	Known RBP eCLIP	11.2	□□□□□ -0.62
CKLF-208	ENST00000563092	GRIPAP1	Q4V328	841 aa		11.2	□□□□□ -0.62
CKLF-208	ENST00000563092	RSPH6A	Q9H0K4	717 aa		11.2	□□□□□ -0.62
CKLF-208	ENST00000563092	ABT1	Q9ULW3	272 aa	Known RBP	11.2	□□□□□ -0.62
CKLF-208	ENST00000563092	TLL2	Q9Y6L7	1015 aa		11.2	□□□□□ -0.62
CKLF-208	ENST00000563092	ABCC12	Q96J65	1359 aa		11.19	□□□□□ -0.62
CKLF-208	ENST00000563092	IBTK	Q9P2D0	1353 aa	Predicted RBP	11.19	□□□□□ -0.62
CKLF-208	ENST00000563092	POTEB2	H3BUK9	544 aa		11.19	□□□□□ -0.62
CKLF-208	ENST00000563092	MAP2K2	P36507	400 aa		11.19	□□□□□ -0.62
CKLF-208	ENST00000563092	EPS15	P42566	896 aa		11.19	□□□□□ -0.62
CKLF-208	ENST00000563092	ECE1	P42892	770 aa		11.19	□□□□□ -0.62
CKLF-208	ENST00000563092	MLLT1	Q03111	559 aa	Predicted RBP	11.19	□□□□□ -0.62
CKLF-208	ENST00000563092	HLF	Q16534	295 aa		11.19	□□□□□ -0.62
CKLF-208	ENST00000563092	USP50	Q70EL3	339 aa	Predicted RBP	11.19	□□□□□ -0.62
CKLF-208	ENST00000563092	JDP2	Q8WYK2	163 aa		11.19	□□□□□ -0.62
CKLF-208	ENST00000563092	OTUD5	Q96G74	571 aa		11.19	□□□□□ -0.62
CKLF-208	ENST00000563092	GPR101	Q96P66	508 aa	Predicted RBP	11.19	□□□□□ -0.62
CKLF-208	ENST00000563092	TNRC18	O15417	2968 aa	Predicted RBP	11.19	□□□□□ -0.62
CKLF-208	ENST00000563092	EIF6	P56537	245 aa	Known RBP	11.18	□□□□□ -0.62
CKLF-208	ENST00000563092	CYP4F22	Q6NT55	531 aa		11.18	□□□□□ -0.62
CKLF-208	ENST00000563092	HHIPL1	Q96JK4	782 aa		11.18	□□□□□ -0.62
CKLF-208	ENST00000563092	PGAP2	Q9UHJ9	254 aa		11.18	□□□□□ -0.62
CKLF-208	ENST00000563092	ERVV-1	B6SEH8	477 aa		11.17	□□□□□ -0.62
CKLF-208	ENST00000563092	U2SURP	O15042	1029 aa	Known RBP	11.17	□□□□□ -0.62
CKLF-208	ENST00000563092	CA12	O43570	354 aa		11.17	□□□□□ -0.62
CKLF-208	ENST00000563092	PRKAR2B	P31323	418 aa		11.17	□□□□□ -0.62
CKLF-208	ENST00000563092	CC2D1B	Q5T0F9	858 aa	Known RBP	11.17	□□□□□ -0.62
CKLF-208	ENST00000563092	SAPCD2	Q86UD0	394 aa		11.17	□□□□□ -0.62
CKLF-208	ENST00000563092	VPS33B	Q9H267	617 aa		11.17	□□□□□ -0.62
CKLF-208	ENST00000563092	CCDC85C	A6NKD9	419 aa		11.16	□□□□□ -0.62
CKLF-208	ENST00000563092	TRAF5	O00463	557 aa		11.16	□□□□□ -0.62
CKLF-208	ENST00000563092	HTATSF1	O43719	755 aa	Known RBP	11.16	□□□□□ -0.62
CKLF-208	ENST00000563092	LMOD1	P29536	600 aa	Predicted RBP	11.16	□□□□□ -0.62
CKLF-208	ENST00000563092	ASTL	Q6HA08	431 aa	Predicted RBP	11.16	□□□□□ -0.62
CKLF-208	ENST00000563092	CRAMP1	Q96RY5	1269 aa		11.16	□□□□□ -0.62
CKLF-208	ENST00000563092	NYX	Q9GZU5	481 aa		11.16	□□□□□ -0.62
CKLF-208	ENST00000563092	TRPM7	Q96QT4	1865 aa		11.16	□□□□□ -0.62
CKLF-208	ENST00000563092	BRPF1	P55201	1214 aa	Predicted RBP	11.15	□□□□□ -0.62
CKLF-208	ENST00000563092	SLC51A	Q86UW1	340 aa		11.15	□□□□□ -0.62
CKLF-208	ENST00000563092	BEGAIN	Q9BUH8	593 aa		11.15	□□□□□ -0.62
CKLF-208	ENST00000563092	RTFDC1	Q9BY42	306 aa	Predicted RBP	11.15	□□□□□ -0.62
CKLF-208	ENST00000563092	PLSCR2	Q9NRY7	297 aa		11.15	□□□□□ -0.62
CKLF-208	ENST00000563092	GPRC5D	Q9NZD1	345 aa		11.15	□□□□□ -0.62
CKLF-208	ENST00000563092	GJA3	Q9Y6H8	435 aa		11.15	□□□□□ -0.62
CKLF-208	ENST00000563092	LAMB4	A4D0S4	1761 aa		11.15	□□□□□ -0.62
CKLF-208	ENST00000563092	UBN2	Q6ZU65	1347 aa		11.14	□□□□□ -0.63
CKLF-208	ENST00000563092	FAM177B	A6PVY3	158 aa		11.14	□□□□□ -0.63
CKLF-208	ENST00000563092	AOC2	O75106	756 aa		11.14	□□□□□ -0.63
CKLF-208	ENST00000563092	MCM10	Q7L590	875 aa		11.14	□□□□□ -0.63
CKLF-208	ENST00000563092	NUTM1	Q86Y26	1132 aa		11.14	□□□□□ -0.63
CKLF-208	ENST00000563092	LARGE2	Q8N3Y3	721 aa		11.14	□□□□□ -0.63
CKLF-208	ENST00000563092	MCOLN1	Q9GZU1	580 aa		11.14	□□□□□ -0.63
CKLF-208	ENST00000563092	TSPYL2	Q9H2G4	693 aa	Predicted RBP	11.14	□□□□□ -0.63
CKLF-208	ENST00000563092	ADARB2	Q9NS39	739 aa	Known RBP	11.14	□□□□□ -0.63
CKLF-208	ENST00000563092	MAP3K15	Q6ZN16	1313 aa		11.13	□□□□□ -0.63
CKLF-208	ENST00000563092	CDHR2	Q9BYE9	1310 aa		11.13	□□□□□ -0.63
CKLF-208	ENST00000563092	NTSR2	O95665	410 aa		11.13	□□□□□ -0.63
CKLF-208	ENST00000563092	ZNF34	Q8IZ26	560 aa		11.13	□□□□□ -0.63

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