RNA–Protein interactions for RNA: ENST00000562420.1

VPS35-203, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 740 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-203ENST00000562420 NPR3P17342 541 aa6.32□□□□□ -1.4
VPS35-203ENST00000562420 ARID4AP29374 1257 aaPredicted RBP6.32□□□□□ -1.4
VPS35-203ENST00000562420 INPP5BP32019 993 aa6.32□□□□□ -1.4
VPS35-203ENST00000562420 ARSDP51689 593 aa6.32□□□□□ -1.4
VPS35-203ENST00000562420 SF3B2Q13435 895 aaKnown RBP6.32□□□□□ -1.4
VPS35-203ENST00000562420 XP32Q5T750 250 aa6.32□□□□□ -1.4
VPS35-203ENST00000562420 IFT43Q96FT9 208 aa6.32□□□□□ -1.4
VPS35-203ENST00000562420 CEP63Q96MT8 703 aa6.32□□□□□ -1.4
VPS35-203ENST00000562420 SAP130Q9H0E3 1048 aa6.32□□□□□ -1.4
VPS35-203ENST00000562420 FAM13BQ9NYF5 915 aa6.32□□□□□ -1.4
VPS35-203ENST00000562420 KLK14Q9P0G3 267 aa6.32□□□□□ -1.4
VPS35-203ENST00000562420 STIM2Q9P246 746 aa6.32□□□□□ -1.4
VPS35-203ENST00000562420 GDF2Q9UK05 429 aaPredicted RBP6.32□□□□□ -1.4
VPS35-203ENST00000562420 HCN2Q9UL51 889 aa6.32□□□□□ -1.4
VPS35-203ENST00000562420 MICAL2O94851 1124 aa6.31□□□□□ -1.4
VPS35-203ENST00000562420 BMP4P12644 408 aa6.31□□□□□ -1.4
VPS35-203ENST00000562420 IDH3AP50213 366 aa6.31□□□□□ -1.4
VPS35-203ENST00000562420 CAPN12Q6ZSI9 719 aa6.31□□□□□ -1.4
VPS35-203ENST00000562420 TXNDC2Q86VQ3 553 aa6.31□□□□□ -1.4
VPS35-203ENST00000562420 SEPT3Q9UH03 358 aa6.31□□□□□ -1.4
VPS35-203ENST00000562420 KCNH4Q9UQ05 1017 aa6.31□□□□□ -1.4
VPS35-203ENST00000562420 GNEQ9Y223 722 aaKnown RBP6.31□□□□□ -1.4
VPS35-203ENST00000562420 CARNS1A5YM72 827 aa6.3□□□□□ -1.4
VPS35-203ENST00000562420 PATL2C9JE40 543 aaKnown RBP6.3□□□□□ -1.4
VPS35-203ENST00000562420 ZNF468Q5VIY5 522 aaPredicted RBP6.3□□□□□ -1.4
VPS35-203ENST00000562420 SLCO4C1Q6ZQN7 724 aa6.3□□□□□ -1.4
VPS35-203ENST00000562420 GOLGA6L1Q8N7Z2 621 aa6.3□□□□□ -1.4
VPS35-203ENST00000562420 SCARF2Q96GP6 870 aaPredicted RBP6.3□□□□□ -1.4
VPS35-203ENST00000562420 C2CD2LO14523 706 aa6.29□□□□□ -1.4
VPS35-203ENST00000562420 EGFRP00533 1210 aa6.29□□□□□ -1.4
VPS35-203ENST00000562420 CD33P20138 364 aa6.29□□□□□ -1.4
VPS35-203ENST00000562420 CTBSQ01459 385 aa6.29□□□□□ -1.4
VPS35-203ENST00000562420 NEUROD1Q13562 356 aa6.29□□□□□ -1.4
VPS35-203ENST00000562420 NAA30Q147X3 362 aaPredicted RBP6.29□□□□□ -1.4
VPS35-203ENST00000562420 KANK3Q6NY19 840 aa6.29□□□□□ -1.4
VPS35-203ENST00000562420 TREML1Q86YW5 311 aa6.29□□□□□ -1.4
VPS35-203ENST00000562420 ETFBKMTQ8IXQ9 262 aa6.29□□□□□ -1.4
VPS35-203ENST00000562420 GTF3C2Q8WUA4 911 aaPredicted RBP6.29□□□□□ -1.4
VPS35-203ENST00000562420 OXCT2Q9BYC2 517 aaPredicted RBP6.29□□□□□ -1.4
VPS35-203ENST00000562420 STRN4Q9NRL3 753 aa6.29□□□□□ -1.4
VPS35-203ENST00000562420 SIN3BO75182 1162 aa6.28□□□□□ -1.4
VPS35-203ENST00000562420 IGHA1P01876 353 aa6.28□□□□□ -1.4
VPS35-203ENST00000562420 CELA2BP08218 269 aaPredicted RBP6.28□□□□□ -1.4
VPS35-203ENST00000562420 ADH6P28332 368 aa6.28□□□□□ -1.4
VPS35-203ENST00000562420 MAP3K10Q02779 954 aa6.28□□□□□ -1.4
VPS35-203ENST00000562420 KCNA1Q09470 495 aa6.28□□□□□ -1.4
VPS35-203ENST00000562420 SPEM2Q0P670 501 aa6.28□□□□□ -1.4
VPS35-203ENST00000562420 SFSWAPQ12872 951 aaKnown RBP6.28□□□□□ -1.4
VPS35-203ENST00000562420 ALKBH2Q6NS38 261 aa6.28□□□□□ -1.4
VPS35-203ENST00000562420 CCER1Q8TC90 406 aaPredicted RBP6.28□□□□□ -1.4
VPS35-203ENST00000562420 OPLAHO14841 1288 aa6.27□□□□□ -1.41
VPS35-203ENST00000562420 FAM13AO94988 1023 aa6.27□□□□□ -1.41
VPS35-203ENST00000562420 RPLP1P05386 114 aaKnown RBP6.27□□□□□ -1.41
VPS35-203ENST00000562420 GRNP28799 593 aaKnown RBP6.27□□□□□ -1.41
VPS35-203ENST00000562420 FKBP4Q02790 459 aaKnown RBP eCLIP6.27□□□□□ -1.41
VPS35-203ENST00000562420 TNFRSF25Q93038 417 aa6.27□□□□□ -1.41
VPS35-203ENST00000562420 ACDQ96AP0 544 aa6.27□□□□□ -1.41
VPS35-203ENST00000562420 MDFIQ99750 246 aa6.27□□□□□ -1.41
VPS35-203ENST00000562420 CNTNAP5Q8WYK1 1306 aa6.26□□□□□ -1.41
VPS35-203ENST00000562420 OIP5O43482 229 aa6.26□□□□□ -1.41
VPS35-203ENST00000562420 BCRP11274 1271 aa6.26□□□□□ -1.41
VPS35-203ENST00000562420 ZAP70P43403 619 aa6.26□□□□□ -1.41
VPS35-203ENST00000562420 CCINQ13939 588 aa6.26□□□□□ -1.41
VPS35-203ENST00000562420 KRTAP4-8Q9BYQ9 185 aa6.26□□□□□ -1.41
VPS35-203ENST00000562420 ADARB2-AS1A8MUL3 147 aa6.25□□□□□ -1.41
VPS35-203ENST00000562420 ICMTO60725 284 aa6.25□□□□□ -1.41
VPS35-203ENST00000562420 MAP3K6O95382 1288 aa6.25□□□□□ -1.41
VPS35-203ENST00000562420 SCNN1AP37088 669 aa6.25□□□□□ -1.41
VPS35-203ENST00000562420 NOM1Q5C9Z4 860 aaKnown RBP6.25□□□□□ -1.41
VPS35-203ENST00000562420 FAM26DQ5JW98 314 aa6.25□□□□□ -1.41
VPS35-203ENST00000562420 PIK3R5Q8WYR1 880 aa6.25□□□□□ -1.41
VPS35-203ENST00000562420 GSX2Q9BZM3 304 aa6.25□□□□□ -1.41
VPS35-203ENST00000562420 ENAMQ9NRM1 1142 aa6.25□□□□□ -1.41
VPS35-203ENST00000562420 PRR12Q9ULL5 1215 aa6.25□□□□□ -1.41
VPS35-203ENST00000562420 RTCBQ9Y3I0 505 aaKnown RBP6.25□□□□□ -1.41
VPS35-203ENST00000562420 KCNMB2Q9Y691 235 aa6.25□□□□□ -1.41
VPS35-203ENST00000562420 EPXP11678 715 aa6.24□□□□□ -1.41
VPS35-203ENST00000562420 HOXD8P13378 290 aaPredicted RBP6.24□□□□□ -1.41
VPS35-203ENST00000562420 MPSTP25325 297 aa6.24□□□□□ -1.41
VPS35-203ENST00000562420 EIF1AXP47813 144 aaKnown RBP6.24□□□□□ -1.41
VPS35-203ENST00000562420 SLC30A3Q99726 388 aa6.24□□□□□ -1.41
VPS35-203ENST00000562420 GGA1Q9UJY5 639 aa6.24□□□□□ -1.41
VPS35-203ENST00000562420 FNDC3AQ9Y2H6 1198 aaKnown RBP6.24□□□□□ -1.41
VPS35-203ENST00000562420 PDIA4P13667 645 aaKnown RBP6.23□□□□□ -1.41
VPS35-203ENST00000562420 MZF1P28698 734 aaPredicted RBP6.23□□□□□ -1.41
VPS35-203ENST00000562420 SERPINB4P48594 390 aa6.23□□□□□ -1.41
VPS35-203ENST00000562420 PLA2G4EQ3MJ16 856 aa6.23□□□□□ -1.41
VPS35-203ENST00000562420 SYT9Q86SS6 491 aa6.23□□□□□ -1.41
VPS35-203ENST00000562420 FCHSD1Q86WN1 690 aa6.23□□□□□ -1.41
VPS35-203ENST00000562420 DCAF5Q96JK2 942 aa6.23□□□□□ -1.41
VPS35-203ENST00000562420 KLF15Q9UIH9 416 aa6.23□□□□□ -1.41
VPS35-203ENST00000562420 ELOA3CA0A087WX78 387 aaPredicted RBP6.22□□□□□ -1.41
VPS35-203ENST00000562420 ELOA3DA6NLF2 546 aaPredicted RBP6.22□□□□□ -1.41
VPS35-203ENST00000562420 MSTNO14793 375 aa6.22□□□□□ -1.41
VPS35-203ENST00000562420 ZBTB39O15060 712 aa6.22□□□□□ -1.41
VPS35-203ENST00000562420 XYLBO75191 536 aa6.22□□□□□ -1.41
VPS35-203ENST00000562420 ABL1P00519 1130 aa6.22□□□□□ -1.41
VPS35-203ENST00000562420 ITGB2P05107 769 aa6.22□□□□□ -1.41
VPS35-203ENST00000562420 PCSK2P16519 638 aa6.22□□□□□ -1.41
VPS35-203ENST00000562420 SOX18P35713 384 aa6.22□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms