RNA–Protein interactions for RNA: ENST00000562389.5

CLK3-207, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 572 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-207ENST00000562389 UTP14AQ9BVJ6 771 aaKnown RBP21.39■■□□□ 1.01
CLK3-207ENST00000562389 MAP3K2Q9Y2U5 619 aa21.39■■□□□ 1.01
CLK3-207ENST00000562389 PI4KAP2A4QPH2 592 aa21.38■■□□□ 1.01
CLK3-207ENST00000562389 H0YIN7 160 aa21.38■■□□□ 1.01
CLK3-207ENST00000562389 YBX3P16989 372 aaKnown RBP eCLIP21.38■■□□□ 1.01
CLK3-207ENST00000562389 ERFEQ4G0M1 354 aa21.38■■□□□ 1.01
CLK3-207ENST00000562389 PELP1Q8IZL8 1130 aaKnown RBP21.38■■□□□ 1.01
CLK3-207ENST00000562389 PI4KAP1Q8N8J0 262 aa21.38■■□□□ 1.01
CLK3-207ENST00000562389 PIM2Q9P1W9 311 aa21.38■■□□□ 1.01
CLK3-207ENST00000562389 KLRG2A4D1S0 409 aaPredicted RBP21.37■■□□□ 1.01
CLK3-207ENST00000562389 ATP5J2-PTCD1G3V325 749 aa21.37■■□□□ 1.01
CLK3-207ENST00000562389 FKBP5Q13451 457 aaPredicted RBP21.37■■□□□ 1.01
CLK3-207ENST00000562389 MYD88Q99836 296 aa21.37■■□□□ 1.01
CLK3-207ENST00000562389 LAMB2P55268 1798 aa21.36■■□□□ 1.01
CLK3-207ENST00000562389 ALDH1L2Q3SY69 923 aa21.36■■□□□ 1.01
CLK3-207ENST00000562389 MRPL50Q8N5N7 158 aaKnown RBP21.35■■□□□ 1.01
CLK3-207ENST00000562389 SSH1Q8WYL5 1049 aa21.35■■□□□ 1.01
CLK3-207ENST00000562389 TRMT112Q9UI30 125 aaKnown RBP21.35■■□□□ 1.01
CLK3-207ENST00000562389 WWC3Q9ULE0 1092 aa21.35■■□□□ 1.01
CLK3-207ENST00000562389 DDX60Q8IY21 1712 aaKnown RBP21.35■■□□□ 1.01
CLK3-207ENST00000562389 SH3TC1Q8TE82 1336 aa21.34■■□□□ 1.01
CLK3-207ENST00000562389 GRIN3BO60391 1043 aa21.34■■□□□ 1.01
CLK3-207ENST00000562389 SRGNP10124 158 aa21.34■■□□□ 1.01
CLK3-207ENST00000562389 DALRD3Q5D0E6 543 aaKnown RBP21.34■■□□□ 1.01
CLK3-207ENST00000562389 SLC10A5Q5PT55 438 aa21.34■■□□□ 1.01
CLK3-207ENST00000562389 CCDC191Q8NCU4 936 aa21.34■■□□□ 1.01
CLK3-207ENST00000562389 BCS1LQ9Y276 419 aa21.34■■□□□ 1.01
CLK3-207ENST00000562389 CACNA1SQ13698 1873 aa21.34■■□□□ 1.01
CLK3-207ENST00000562389 NEXNQ0ZGT2 675 aa21.33■■□□□ 1.01
CLK3-207ENST00000562389 STYK1Q6J9G0 422 aa21.33■■□□□ 1.01
CLK3-207ENST00000562389 DNAAF4Q8WXU2 420 aa21.33■■□□□ 1.01
CLK3-207ENST00000562389 MASTLQ96GX5 879 aa21.33■■□□□ 1.01
CLK3-207ENST00000562389 CHD4Q14839 1912 aa21.33■■□□□ 1
CLK3-207ENST00000562389 IGKV5-2P06315 115 aa21.32■■□□□ 1
CLK3-207ENST00000562389 CRY2Q49AN0 593 aa21.32■■□□□ 1
CLK3-207ENST00000562389 TTLL6Q8N841 843 aa21.32■■□□□ 1
CLK3-207ENST00000562389 CWC25Q9NXE8 425 aaPredicted RBP21.32■■□□□ 1
CLK3-207ENST00000562389 NPR1P16066 1061 aa21.31■■□□□ 1
CLK3-207ENST00000562389 ZNF622Q969S3 477 aaKnown RBP eCLIP21.31■■□□□ 13e-6■□□□□ 10
CLK3-207ENST00000562389 PTPRCP08575 1304 aa21.3■■□□□ 1
CLK3-207ENST00000562389 SYNE4Q8N205 404 aa21.3■■□□□ 1
CLK3-207ENST00000562389 ZBTB38Q8NAP3 1195 aaPredicted RBP21.3■■□□□ 1
CLK3-207ENST00000562389 CNKSR1Q969H4 720 aa21.3■■□□□ 1
CLK3-207ENST00000562389 BCL2L13Q9BXK5 485 aa21.3■■□□□ 1
CLK3-207ENST00000562389 SMC4Q9NTJ3 1288 aa21.3■■□□□ 1
CLK3-207ENST00000562389 SLX4Q8IY92 1834 aa21.29■■□□□ 1
CLK3-207ENST00000562389 NEURL1BA8MQ27 555 aa21.29■■□□□ 1
CLK3-207ENST00000562389 PCCAP05165 728 aaPredicted RBP21.29■■□□□ 1
CLK3-207ENST00000562389 BRPF1P55201 1214 aaPredicted RBP21.29■■□□□ 1
CLK3-207ENST00000562389 FAM89AQ96GI7 184 aa21.29■■□□□ 1
CLK3-207ENST00000562389 NLRP3Q96P20 1036 aa21.29■■□□□ 1
CLK3-207ENST00000562389 F6X3S4 739 aa21.28■■□□□ 1
CLK3-207ENST00000562389 RARSP54136 660 aaKnown RBP21.28■■□□□ 1
CLK3-207ENST00000562389 CWF19L2Q2TBE0 894 aaKnown RBP21.28■■□□□ 1
CLK3-207ENST00000562389 C3orf67Q6ZVT6 689 aa21.28■■□□□ 1
CLK3-207ENST00000562389 LINS1Q8NG48 757 aa21.28■■□□□ 1
CLK3-207ENST00000562389 HCLS1P14317 486 aaPredicted RBP21.27■■□□□ 1
CLK3-207ENST00000562389 ALDH1B1P30837 517 aa21.26■□□□□ 0.99
CLK3-207ENST00000562389 HOXA10P31260 410 aaPredicted RBP21.26■□□□□ 0.99
CLK3-207ENST00000562389 BEND3Q5T5X7 828 aa21.26■□□□□ 0.99
CLK3-207ENST00000562389 RPGRQ92834 1020 aaKnown RBP21.26■□□□□ 0.99
CLK3-207ENST00000562389 CDHR2Q9BYE9 1310 aa21.26■□□□□ 0.99
CLK3-207ENST00000562389 MYH3P11055 1940 aa21.25■□□□□ 0.99
CLK3-207ENST00000562389 IRS4O14654 1257 aaPredicted RBP21.25■□□□□ 0.99
CLK3-207ENST00000562389 HSP90B1P14625 803 aaKnown RBP21.25■□□□□ 0.99
CLK3-207ENST00000562389 GCKRQ14397 625 aa21.25■□□□□ 0.99
CLK3-207ENST00000562389 PRPF40BQ6NWY9 871 aaKnown RBP21.25■□□□□ 0.99
CLK3-207ENST00000562389 GOLGB1Q14789 3259 aaKnown RBP21.25■□□□□ 0.99
CLK3-207ENST00000562389 RTL5Q5HYW3 569 aaPredicted RBP21.24■□□□□ 0.99
CLK3-207ENST00000562389 RBM17Q96I25 401 aaKnown RBP21.24■□□□□ 0.99
CLK3-207ENST00000562389 CRAMP1Q96RY5 1269 aa21.24■□□□□ 0.99
CLK3-207ENST00000562389 FER1L6Q2WGJ9 1857 aa21.23■□□□□ 0.99
CLK3-207ENST00000562389 KIF16BQ96L93 1317 aa21.23■□□□□ 0.99
CLK3-207ENST00000562389 UTRNP46939 3433 aa21.23■□□□□ 0.99
CLK3-207ENST00000562389 H7C1W4 665 aa21.22■□□□□ 0.99
CLK3-207ENST00000562389 ALDH1L1O75891 902 aa21.22■□□□□ 0.99
CLK3-207ENST00000562389 SF3B3Q15393 1217 aaKnown RBP21.22■□□□□ 0.99
CLK3-207ENST00000562389 PDE8AO60658 829 aa21.21■□□□□ 0.99
CLK3-207ENST00000562389 SOGA3Q5TF21 947 aa21.21■□□□□ 0.99
CLK3-207ENST00000562389 SLC4A10Q6U841 1118 aa21.21■□□□□ 0.99
CLK3-207ENST00000562389 ARHGAP27Q6ZUM4 889 aa21.21■□□□□ 0.99
CLK3-207ENST00000562389 JARID2Q92833 1246 aaPredicted RBP21.21■□□□□ 0.99
CLK3-207ENST00000562389 SRCIN1Q9C0H9 1055 aa21.21■□□□□ 0.99
CLK3-207ENST00000562389 NOB1Q9ULX3 412 aaKnown RBP21.21■□□□□ 0.99
CLK3-207ENST00000562389 C21orf2O43822 256 aa21.2■□□□□ 0.98
CLK3-207ENST00000562389 UBE3BQ7Z3V4 1068 aa21.2■□□□□ 0.98
CLK3-207ENST00000562389 C7orf43Q8WVR3 580 aa21.2■□□□□ 0.98
CLK3-207ENST00000562389 ABCC4O15439 1325 aa21.2■□□□□ 0.98
CLK3-207ENST00000562389 SBF1O95248 1867 aa21.2■□□□□ 0.98
CLK3-207ENST00000562389 TAF1P21675 1872 aa21.2■□□□□ 0.98
CLK3-207ENST00000562389 CASP7P55210 303 aa21.19■□□□□ 0.98
CLK3-207ENST00000562389 DDX46Q7L014 1031 aaKnown RBP21.19■□□□□ 0.98
CLK3-207ENST00000562389 ARHGAP45Q92619 1136 aa21.19■□□□□ 0.98
CLK3-207ENST00000562389 PLA2G12BQ9BX93 195 aa21.18■□□□□ 0.98
CLK3-207ENST00000562389 API5Q9BZZ5 524 aaKnown RBP21.18■□□□□ 0.98
CLK3-207ENST00000562389 ZNF219Q9P2Y4 722 aaPredicted RBP21.18■□□□□ 0.98
CLK3-207ENST00000562389 PPEF1O14829 653 aaPredicted RBP21.17■□□□□ 0.98
CLK3-207ENST00000562389 BCAR3O75815 825 aa21.17■□□□□ 0.98
CLK3-207ENST00000562389 GRAPQ13588 217 aa21.17■□□□□ 0.98
CLK3-207ENST00000562389 GRAPLQ8TC17 118 aaPredicted RBP21.17■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms