RNA–Protein interactions for RNA: ENST00000561348.1

HERC1-212, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase family member 1, humanhuman

TSL 2

Gene HERC1, Length 588 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC1-212ENST00000561348 SYNE4Q8N205 404 aa12.97□□□□□ -0.33
HERC1-212ENST00000561348 JARID2Q92833 1246 aaPredicted RBP12.97□□□□□ -0.33
HERC1-212ENST00000561348 ANKRD31Q8N7Z5 1873 aa12.97□□□□□ -0.33
HERC1-212ENST00000561348 ATP10DQ9P241 1426 aa12.96□□□□□ -0.33
HERC1-212ENST00000561348 KIAA1551Q9HCM1 1747 aa12.96□□□□□ -0.33
HERC1-212ENST00000561348 CHD4Q14839 1912 aa12.96□□□□□ -0.33
HERC1-212ENST00000561348 CACNA1SQ13698 1873 aa12.96□□□□□ -0.33
HERC1-212ENST00000561348 RGL2O15211 777 aa12.96□□□□□ -0.33
HERC1-212ENST00000561348 VAMP4O75379 141 aa12.96□□□□□ -0.33
HERC1-212ENST00000561348 FKBP5Q13451 457 aaPredicted RBP12.96□□□□□ -0.33
HERC1-212ENST00000561348 NLRP10Q86W26 655 aa12.96□□□□□ -0.33
HERC1-212ENST00000561348 MASTLQ96GX5 879 aa12.96□□□□□ -0.33
HERC1-212ENST00000561348 MAP3K2Q9Y2U5 619 aa12.96□□□□□ -0.33
HERC1-212ENST00000561348 GOLGB1Q14789 3259 aaKnown RBP12.96□□□□□ -0.34
HERC1-212ENST00000561348 ABCC12Q96J65 1359 aa12.95□□□□□ -0.34
HERC1-212ENST00000561348 PI4KAP2A4QPH2 592 aa12.95□□□□□ -0.34
HERC1-212ENST00000561348 E9PSI1 815 aa12.95□□□□□ -0.34
HERC1-212ENST00000561348 NTSR2O95665 410 aa12.95□□□□□ -0.34
HERC1-212ENST00000561348 SRGNP10124 158 aa12.95□□□□□ -0.34
HERC1-212ENST00000561348 NPR1P16066 1061 aa12.95□□□□□ -0.34
HERC1-212ENST00000561348 PI4KAP1Q8N8J0 262 aa12.95□□□□□ -0.34
HERC1-212ENST00000561348 CNKSR1Q969H4 720 aa12.95□□□□□ -0.34
HERC1-212ENST00000561348 FAM89AQ96GI7 184 aa12.95□□□□□ -0.34
HERC1-212ENST00000561348 NLRP3Q96P20 1036 aa12.95□□□□□ -0.34
HERC1-212ENST00000561348 FOXD4L1Q9NU39 408 aa12.95□□□□□ -0.34
HERC1-212ENST00000561348 PDZRN3Q9UPQ7 1066 aa12.95□□□□□ -0.34
HERC1-212ENST00000561348 SH3TC1Q8TE82 1336 aa12.94□□□□□ -0.34
HERC1-212ENST00000561348 RASSF7Q02833 373 aa12.94□□□□□ -0.34
HERC1-212ENST00000561348 NEXNQ0ZGT2 675 aa12.94□□□□□ -0.34
HERC1-212ENST00000561348 STYK1Q6J9G0 422 aa12.94□□□□□ -0.34
HERC1-212ENST00000561348 PRPF40BQ6NWY9 871 aaKnown RBP12.94□□□□□ -0.34
HERC1-212ENST00000561348 UTRNP46939 3433 aa12.93□□□□□ -0.34
HERC1-212ENST00000561348 SLFN5Q08AF3 891 aa12.93□□□□□ -0.34
HERC1-212ENST00000561348 FLIIQ13045 1269 aa12.93□□□□□ -0.34
HERC1-212ENST00000561348 KSR2Q6VAB6 950 aa12.93□□□□□ -0.34
HERC1-212ENST00000561348 C3orf67Q6ZVT6 689 aa12.93□□□□□ -0.34
HERC1-212ENST00000561348 RBM17Q96I25 401 aaKnown RBP12.93□□□□□ -0.34
HERC1-212ENST00000561348 BCL2L13Q9BXK5 485 aa12.93□□□□□ -0.34
HERC1-212ENST00000561348 RNF181Q9P0P0 153 aa12.93□□□□□ -0.34
HERC1-212ENST00000561348 COL11A2P13942 1736 aaPredicted RBP12.93□□□□□ -0.34
HERC1-212ENST00000561348 ZNF521Q96K83 1311 aa12.92□□□□□ -0.34
HERC1-212ENST00000561348 ANKRD36CQ5JPF3 1778 aa12.92□□□□□ -0.34
HERC1-212ENST00000561348 ARFGEF2Q9Y6D5 1785 aa12.92□□□□□ -0.34
HERC1-212ENST00000561348 ZBTB22O15209 634 aa12.92□□□□□ -0.34
HERC1-212ENST00000561348 ALDH1B1P30837 517 aa12.92□□□□□ -0.34
HERC1-212ENST00000561348 BRCA1P38398 1863 aaKnown RBP12.92□□□□□ -0.34
HERC1-212ENST00000561348 C9orf131Q5VYM1 1079 aa12.92□□□□□ -0.34
HERC1-212ENST00000561348 SLC4A10Q6U841 1118 aa12.92□□□□□ -0.34
HERC1-212ENST00000561348 OLFM4Q6UX06 510 aa12.92□□□□□ -0.34
HERC1-212ENST00000561348 CCDC85AQ96PX6 553 aaPredicted RBP12.92□□□□□ -0.34
HERC1-212ENST00000561348 ISCA1Q9BUE6 129 aa12.92□□□□□ -0.34
HERC1-212ENST00000561348 METTL22Q9BUU2 404 aaPredicted RBP12.92□□□□□ -0.34
HERC1-212ENST00000561348 TMX4Q9H1E5 349 aaPredicted RBP12.92□□□□□ -0.34
HERC1-212ENST00000561348 CWC25Q9NXE8 425 aaPredicted RBP12.92□□□□□ -0.34
HERC1-212ENST00000561348 F6X3S4 739 aa12.91□□□□□ -0.34
HERC1-212ENST00000561348 IRS4O14654 1257 aaPredicted RBP12.91□□□□□ -0.34
HERC1-212ENST00000561348 CWF19L2Q2TBE0 894 aaKnown RBP12.91□□□□□ -0.34
HERC1-212ENST00000561348 ZNF784Q8NCA9 323 aaPredicted RBP12.91□□□□□ -0.34
HERC1-212ENST00000561348 TNRC6CQ9HCJ0 1690 aaKnown RBP12.91□□□□□ -0.34
HERC1-212ENST00000561348 SLX4Q8IY92 1834 aa12.9□□□□□ -0.34
HERC1-212ENST00000561348 DDX46Q7L014 1031 aaKnown RBP12.9□□□□□ -0.34
HERC1-212ENST00000561348 DNAAF4Q8WXU2 420 aa12.9□□□□□ -0.34
HERC1-212ENST00000561348 ARFGEF1Q9Y6D6 1849 aa12.9□□□□□ -0.34
HERC1-212ENST00000561348 DLEC1Q9Y238 1755 aa12.89□□□□□ -0.35
HERC1-212ENST00000561348 CCDC191Q8NCU4 936 aa12.89□□□□□ -0.35
HERC1-212ENST00000561348 ADCY9O60503 1353 aa12.89□□□□□ -0.35
HERC1-212ENST00000561348 IBTKQ9P2D0 1353 aaPredicted RBP12.89□□□□□ -0.35
HERC1-212ENST00000561348 PPEF1O14829 653 aaPredicted RBP12.88□□□□□ -0.35
HERC1-212ENST00000561348 CCDC93Q567U6 631 aa12.88□□□□□ -0.35
HERC1-212ENST00000561348 SLC10A5Q5PT55 438 aa12.88□□□□□ -0.35
HERC1-212ENST00000561348 ZBTB38Q8NAP3 1195 aaPredicted RBP12.88□□□□□ -0.35
HERC1-212ENST00000561348 TAOK3Q9H2K8 898 aa12.88□□□□□ -0.35
HERC1-212ENST00000561348 GPBP1L1Q9HC44 474 aaPredicted RBP12.88□□□□□ -0.35
HERC1-212ENST00000561348 SMC4Q9NTJ3 1288 aa12.88□□□□□ -0.35
HERC1-212ENST00000561348 RNF123Q5XPI4 1314 aa12.88□□□□□ -0.35
HERC1-212ENST00000561348 KLRG2A4D1S0 409 aaPredicted RBP12.87□□□□□ -0.35
HERC1-212ENST00000561348 NFKBIEO00221 500 aa12.87□□□□□ -0.35
HERC1-212ENST00000561348 IGKV5-2P06315 115 aa12.87□□□□□ -0.35
HERC1-212ENST00000561348 LMNB1P20700 586 aa12.87□□□□□ -0.35
HERC1-212ENST00000561348 CRY2Q49AN0 593 aa12.87□□□□□ -0.35
HERC1-212ENST00000561348 SOGA3Q5TF21 947 aa12.87□□□□□ -0.35
HERC1-212ENST00000561348 UBE3BQ7Z3V4 1068 aa12.87□□□□□ -0.35
HERC1-212ENST00000561348 SLC51AQ86UW1 340 aa12.87□□□□□ -0.35
HERC1-212ENST00000561348 SSH1Q8WYL5 1049 aa12.87□□□□□ -0.35
HERC1-212ENST00000561348 NEURL1BA8MQ27 555 aa12.86□□□□□ -0.35
HERC1-212ENST00000561348 TRIM28Q13263 835 aaKnown RBP12.86□□□□□ -0.35
HERC1-212ENST00000561348 MRPL50Q8N5N7 158 aaKnown RBP12.86□□□□□ -0.35
HERC1-212ENST00000561348 CRAMP1Q96RY5 1269 aa12.86□□□□□ -0.35
HERC1-212ENST00000561348 ZNF277Q9NRM2 450 aaPredicted RBP12.86□□□□□ -0.35
HERC1-212ENST00000561348 ABCC4O15439 1325 aa12.86□□□□□ -0.35
HERC1-212ENST00000561348 CCDC88AQ3V6T2 1871 aa12.85□□□□□ -0.35
HERC1-212ENST00000561348 PCCAP05165 728 aaPredicted RBP12.85□□□□□ -0.35
HERC1-212ENST00000561348 HSP90B1P14625 803 aaKnown RBP12.85□□□□□ -0.35
HERC1-212ENST00000561348 CHMP3Q9Y3E7 222 aa12.85□□□□□ -0.35
HERC1-212ENST00000561348 TAF1P21675 1872 aa12.85□□□□□ -0.35
HERC1-212ENST00000561348 CACNA1FO60840 1977 aa12.84□□□□□ -0.35
HERC1-212ENST00000561348 PDE8AO60658 829 aa12.84□□□□□ -0.35
HERC1-212ENST00000561348 HOXA10P31260 410 aaPredicted RBP12.84□□□□□ -0.35
HERC1-212ENST00000561348 PRELPP51888 382 aa12.84□□□□□ -0.35
HERC1-212ENST00000561348 GCKRQ14397 625 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms