RNA–Protein interactions for RNA: ENST00000561258.1

VPS13C-210, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 3

Gene VPS13C, Length 614 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-210ENST00000561258 DYRK3O43781 588 aa8.79□□□□□ -1
VPS13C-210ENST00000561258 TYRO3Q06418 890 aa8.79□□□□□ -1
VPS13C-210ENST00000561258 NEUROD1Q13562 356 aa8.79□□□□□ -1
VPS13C-210ENST00000561258 GLMNQ92990 594 aa8.79□□□□□ -1
VPS13C-210ENST00000561258 SUSD3Q96L08 255 aa8.79□□□□□ -1
VPS13C-210ENST00000561258 PSMG3-AS1Q96PY0 264 aa8.79□□□□□ -1
VPS13C-210ENST00000561258 ANKIB1Q9P2G1 1089 aa8.79□□□□□ -1
VPS13C-210ENST00000561258 ATP1A2P50993 1020 aa8.78□□□□□ -1
VPS13C-210ENST00000561258 HIRAP54198 1017 aaPredicted RBP8.78□□□□□ -1
VPS13C-210ENST00000561258 KCNQ4P56696 695 aa8.78□□□□□ -1
VPS13C-210ENST00000561258 POTEAQ6S8J7 498 aa8.78□□□□□ -1
VPS13C-210ENST00000561258 PLEKHM2Q8IWE5 1019 aa8.78□□□□□ -1
VPS13C-210ENST00000561258 OGFOD1Q8N543 542 aa8.78□□□□□ -1
VPS13C-210ENST00000561258 TSEN2Q8NCE0 465 aaKnown RBP8.78□□□□□ -1
VPS13C-210ENST00000561258 BHMTQ93088 406 aa8.78□□□□□ -1
VPS13C-210ENST00000561258 CALR3Q96L12 384 aaKnown RBP8.78□□□□□ -1
VPS13C-210ENST00000561258 UCN2Q96RP3 112 aa8.78□□□□□ -1
VPS13C-210ENST00000561258 CHMP3Q9Y3E7 222 aa8.78□□□□□ -1
VPS13C-210ENST00000561258 PPP1R15AO75807 674 aaPredicted RBP8.77□□□□□ -1.01
VPS13C-210ENST00000561258 TBC1D8BQ0IIM8 1120 aa8.77□□□□□ -1.01
VPS13C-210ENST00000561258 TRAPPC3LQ5T215 181 aa8.77□□□□□ -1.01
VPS13C-210ENST00000561258 SCO2A0A1W2PP80 73 aa8.76□□□□□ -1.01
VPS13C-210ENST00000561258 C21orf2O43822 256 aa8.76□□□□□ -1.01
VPS13C-210ENST00000561258 PPP1R12BO60237 982 aaPredicted RBP8.76□□□□□ -1.01
VPS13C-210ENST00000561258 HDGFL1Q5TGJ6 251 aa8.76□□□□□ -1.01
VPS13C-210ENST00000561258 ZNF594Q96JF6 807 aaPredicted RBP8.76□□□□□ -1.01
VPS13C-210ENST00000561258 NACC1Q96RE7 527 aa8.76□□□□□ -1.01
VPS13C-210ENST00000561258 IGFLR1Q9H665 355 aa8.76□□□□□ -1.01
VPS13C-210ENST00000561258 MKRN1Q9UHC7 482 aaKnown RBP8.76□□□□□ -1.01
VPS13C-210ENST00000561258 ALDH16A1Q8IZ83 802 aa8.75□□□□□ -1.01
VPS13C-210ENST00000561258 LARGE2Q8N3Y3 721 aa8.75□□□□□ -1.01
VPS13C-210ENST00000561258 PALM3A6NDB9 673 aaPredicted RBP8.74□□□□□ -1.01
VPS13C-210ENST00000561258 M0R2N6 131 aa8.74□□□□□ -1.01
VPS13C-210ENST00000561258 ATP9BO43861 1147 aa8.74□□□□□ -1.01
VPS13C-210ENST00000561258 LILRB5O75023 590 aa8.74□□□□□ -1.01
VPS13C-210ENST00000561258 DKK1O94907 266 aa8.74□□□□□ -1.01
VPS13C-210ENST00000561258 SELPP16109 830 aa8.74□□□□□ -1.01
VPS13C-210ENST00000561258 NUDT8Q8WV74 236 aa8.74□□□□□ -1.01
VPS13C-210ENST00000561258 UBE2OQ9C0C9 1292 aaKnown RBP8.74□□□□□ -1.01
VPS13C-210ENST00000561258 PRSS36Q5K4E3 855 aa8.73□□□□□ -1.01
VPS13C-210ENST00000561258 BTLAQ7Z6A9 289 aa8.73□□□□□ -1.01
VPS13C-210ENST00000561258 SLC6A14Q9UN76 642 aa8.73□□□□□ -1.01
VPS13C-210ENST00000561258 ATAD2Q6PL18 1390 aa8.73□□□□□ -1.01
VPS13C-210ENST00000561258 A0A0A0MRY4 1105 aa8.72□□□□□ -1.01
VPS13C-210ENST00000561258 SIX5Q8N196 739 aa8.72□□□□□ -1.01
VPS13C-210ENST00000561258 NGLY1Q96IV0 654 aa8.72□□□□□ -1.01
VPS13C-210ENST00000561258 KRTAP9-2Q9BYQ4 174 aa8.72□□□□□ -1.01
VPS13C-210ENST00000561258 JPH1Q9HDC5 661 aaPredicted RBP8.72□□□□□ -1.01
VPS13C-210ENST00000561258 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.71□□□□□ -1.02
VPS13C-210ENST00000561258 C9orf172C9J069 976 aa8.71□□□□□ -1.02
VPS13C-210ENST00000561258 ADGRE1Q14246 886 aa8.71□□□□□ -1.02
VPS13C-210ENST00000561258 MBTPS1Q14703 1052 aa8.71□□□□□ -1.02
VPS13C-210ENST00000561258 SHISA2Q6UWI4 295 aa8.71□□□□□ -1.02
VPS13C-210ENST00000561258 AEBP1Q8IUX7 1158 aa8.71□□□□□ -1.02
VPS13C-210ENST00000561258 CHMP7Q8WUX9 453 aaPredicted RBP8.71□□□□□ -1.02
VPS13C-210ENST00000561258 SCG3Q8WXD2 468 aaKnown RBP8.71□□□□□ -1.02
VPS13C-210ENST00000561258 C2orf49Q9BVC5 232 aaPredicted RBP8.71□□□□□ -1.02
VPS13C-210ENST00000561258 LGR5O75473 907 aa8.69□□□□□ -1.02
VPS13C-210ENST00000561258 ELNP15502 786 aa8.69□□□□□ -1.02
VPS13C-210ENST00000561258 ARTNQ5T4W7 220 aa8.69□□□□□ -1.02
VPS13C-210ENST00000561258 PSAPL1Q6NUJ1 521 aa8.69□□□□□ -1.02
VPS13C-210ENST00000561258 GSX2Q9BZM3 304 aa8.69□□□□□ -1.02
VPS13C-210ENST00000561258 DNAJB12Q9NXW2 375 aaKnown RBP8.69□□□□□ -1.02
VPS13C-210ENST00000561258 NAGPAQ9UK23 515 aa8.69□□□□□ -1.02
VPS13C-210ENST00000561258 RBM19Q9Y4C8 960 aaKnown RBP8.69□□□□□ -1.02
VPS13C-210ENST00000561258 AFF1P51825 1210 aaKnown RBP8.68□□□□□ -1.02
VPS13C-210ENST00000561258 STAG2Q8N3U4 1231 aa8.68□□□□□ -1.02
VPS13C-210ENST00000561258 GAS2L2Q8NHY3 880 aa8.68□□□□□ -1.02
VPS13C-210ENST00000561258 PBXIP1Q96AQ6 731 aa8.68□□□□□ -1.02
VPS13C-210ENST00000561258 ZFP64Q9NPA5 681 aa8.68□□□□□ -1.02
VPS13C-210ENST00000561258 KRTAP9-6A0A140TA67 174 aa8.67□□□□□ -1.02
VPS13C-210ENST00000561258 RASA1P20936 1047 aa8.67□□□□□ -1.02
VPS13C-210ENST00000561258 RAC1P63000 192 aa8.67□□□□□ -1.02
VPS13C-210ENST00000561258 TXNRD3Q86VQ6 643 aa8.67□□□□□ -1.02
VPS13C-210ENST00000561258 DMRTC2Q8IXT2 367 aaPredicted RBP8.67□□□□□ -1.02
VPS13C-210ENST00000561258 LENG1Q96BZ8 264 aaPredicted RBP8.67□□□□□ -1.02
VPS13C-210ENST00000561258 ACIN1Q9UKV3 1341 aaKnown RBP8.67□□□□□ -1.02
VPS13C-210ENST00000561258 GTF3C5Q9Y5Q8 519 aaPredicted RBP8.67□□□□□ -1.02
VPS13C-210ENST00000561258 NFKB1P19838 968 aa8.66□□□□□ -1.02
VPS13C-210ENST00000561258 PDE4CQ08493 712 aa8.66□□□□□ -1.02
VPS13C-210ENST00000561258 CFAP70Q5T0N1 1121 aa8.66□□□□□ -1.02
VPS13C-210ENST00000561258 PNMA5Q96PV4 448 aa8.66□□□□□ -1.02
VPS13C-210ENST00000561258 BCS1LQ9Y276 419 aa8.66□□□□□ -1.02
VPS13C-210ENST00000561258 RGS9O75916 674 aaPredicted RBP8.65□□□□□ -1.02
VPS13C-210ENST00000561258 H2AFB1P0C5Y9 115 aa8.65□□□□□ -1.02
VPS13C-210ENST00000561258 H2AFB2P0C5Z0 115 aa8.65□□□□□ -1.02
VPS13C-210ENST00000561258 GRNP28799 593 aaKnown RBP8.65□□□□□ -1.02
VPS13C-210ENST00000561258 SEC13P55735 322 aa8.65□□□□□ -1.02
VPS13C-210ENST00000561258 SRPK2P78362 688 aaKnown RBP8.65□□□□□ -1.02
VPS13C-210ENST00000561258 CCINQ13939 588 aa8.65□□□□□ -1.02
VPS13C-210ENST00000561258 HIF1AQ16665 826 aa8.65□□□□□ -1.02
VPS13C-210ENST00000561258 FMR1NBQ8N0W7 255 aaPredicted RBP8.65□□□□□ -1.02
VPS13C-210ENST00000561258 TFIP11Q9UBB9 837 aaKnown RBP8.65□□□□□ -1.02
VPS13C-210ENST00000561258 DMGDHQ9UI17 866 aaKnown RBP8.65□□□□□ -1.02
VPS13C-210ENST00000561258 NRG1Q02297 640 aaPredicted RBP8.64□□□□□ -1.03
VPS13C-210ENST00000561258 IER5Q5VY09 327 aa8.64□□□□□ -1.03
VPS13C-210ENST00000561258 ILDR2Q71H61 639 aa8.64□□□□□ -1.03
VPS13C-210ENST00000561258 TP53INP1Q96A56 240 aa8.64□□□□□ -1.03
VPS13C-210ENST00000561258 HINFPQ9BQA5 517 aa8.64□□□□□ -1.03
VPS13C-210ENST00000561258 USP21Q9UK80 565 aa8.64□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 117.5 ms