RNA–Protein interactions for RNA: ENST00000560514.1

TSPAN3-208, Transcript of tetraspanin 3, humanhuman

TSL 2

Gene TSPAN3, Length 638 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN3-208ENST00000560514 NBPF15Q8N660 670 aa23.79■■□□□ 1.4
TSPAN3-208ENST00000560514 NUDCQ9Y266 331 aa23.79■■□□□ 1.4
TSPAN3-208ENST00000560514 HLFQ16534 295 aa23.78■■□□□ 1.4
TSPAN3-208ENST00000560514 CYP4F22Q6NT55 531 aa23.78■■□□□ 1.4
TSPAN3-208ENST00000560514 MCM10Q7L590 875 aa23.78■■□□□ 1.4
TSPAN3-208ENST00000560514 USP50Q70EL3 339 aaPredicted RBP23.77■■□□□ 1.4
TSPAN3-208ENST00000560514 RSPH6AQ9H0K4 717 aa23.77■■□□□ 1.4
TSPAN3-208ENST00000560514 TMX4Q9H1E5 349 aaPredicted RBP23.77■■□□□ 1.4
TSPAN3-208ENST00000560514 EPS15P42566 896 aa23.76■■□□□ 1.39
TSPAN3-208ENST00000560514 CRY2Q49AN0 593 aa23.76■■□□□ 1.39
TSPAN3-208ENST00000560514 NUTM1Q86Y26 1132 aa23.76■■□□□ 1.39
TSPAN3-208ENST00000560514 NPC1L1Q9UHC9 1359 aa23.76■■□□□ 1.39
TSPAN3-208ENST00000560514 THSD7BQ9C0I4 1608 aa23.75■■□□□ 1.39
TSPAN3-208ENST00000560514 SCNN1DP51172 638 aa23.75■■□□□ 1.39
TSPAN3-208ENST00000560514 NIM1KQ8IY84 436 aa23.75■■□□□ 1.39
TSPAN3-208ENST00000560514 NGEFQ8N5V2 710 aa23.75■■□□□ 1.39
TSPAN3-208ENST00000560514 FMR1Q06787 632 aaKnown RBP eCLIP23.74■■□□□ 1.39
TSPAN3-208ENST00000560514 RBM17Q96I25 401 aaKnown RBP23.74■■□□□ 1.39
TSPAN3-208ENST00000560514 CFAP44Q96MT7 982 aa23.74■■□□□ 1.39
TSPAN3-208ENST00000560514 LTBP1Q14766 1721 aa23.73■■□□□ 1.39
TSPAN3-208ENST00000560514 U2AF1L5P0DN76 240 aaPredicted RBP23.73■■□□□ 1.39
TSPAN3-208ENST00000560514 MAP2K2P36507 400 aa23.73■■□□□ 1.39
TSPAN3-208ENST00000560514 U2AF1Q01081 240 aaKnown RBP eCLIP23.73■■□□□ 1.39
TSPAN3-208ENST00000560514 KIF6Q6ZMV9 814 aa23.73■■□□□ 1.39
TSPAN3-208ENST00000560514 TLL2Q9Y6L7 1015 aa23.73■■□□□ 1.39
TSPAN3-208ENST00000560514 ABCC12Q96J65 1359 aa23.73■■□□□ 1.39
TSPAN3-208ENST00000560514 TRAF5O00463 557 aa23.72■■□□□ 1.39
TSPAN3-208ENST00000560514 CCER1Q8TC90 406 aaPredicted RBP23.72■■□□□ 1.39
TSPAN3-208ENST00000560514 SNED1Q8TER0 1413 aa23.72■■□□□ 1.39
TSPAN3-208ENST00000560514 NUP98P52948 1817 aa23.72■■□□□ 1.39
TSPAN3-208ENST00000560514 ERVV-1B6SEH8 477 aa23.71■■□□□ 1.39
TSPAN3-208ENST00000560514 TCERG1O14776 1098 aaKnown RBP23.71■■□□□ 1.39
TSPAN3-208ENST00000560514 PPEF1O14829 653 aaPredicted RBP23.71■■□□□ 1.39
TSPAN3-208ENST00000560514 CA12O43570 354 aa23.71■■□□□ 1.39
TSPAN3-208ENST00000560514 HTATSF1O43719 755 aaKnown RBP23.71■■□□□ 1.39
TSPAN3-208ENST00000560514 DCTN1Q14203 1278 aa23.71■■□□□ 1.39
TSPAN3-208ENST00000560514 TAF7Q15545 349 aaPredicted RBP23.71■■□□□ 1.39
TSPAN3-208ENST00000560514 CST9Q5W186 159 aa23.71■■□□□ 1.39
TSPAN3-208ENST00000560514 TSKSQ9UJT2 592 aa23.71■■□□□ 1.39
TSPAN3-208ENST00000560514 LAMB4A4D0S4 1761 aa23.7■■□□□ 1.39
TSPAN3-208ENST00000560514 COL4A5P29400 1685 aa23.7■■□□□ 1.39
TSPAN3-208ENST00000560514 PPIP5K2O43314 1243 aa23.7■■□□□ 1.38
TSPAN3-208ENST00000560514 HOXA10P31260 410 aaPredicted RBP23.7■■□□□ 1.38
TSPAN3-208ENST00000560514 RGS19P49795 217 aa23.7■■□□□ 1.38
TSPAN3-208ENST00000560514 ADARB2Q9NS39 739 aaKnown RBP23.7■■□□□ 1.38
TSPAN3-208ENST00000560514 MAP3K15Q6ZN16 1313 aa23.69■■□□□ 1.38
TSPAN3-208ENST00000560514 CRAMP1Q96RY5 1269 aa23.69■■□□□ 1.38
TSPAN3-208ENST00000560514 AOC2O75106 756 aa23.68■■□□□ 1.38
TSPAN3-208ENST00000560514 GPTP24298 496 aa23.68■■□□□ 1.38
TSPAN3-208ENST00000560514 RRP7AQ9Y3A4 280 aaKnown RBP23.68■■□□□ 1.38
TSPAN3-208ENST00000560514 CELF2O95319 508 aaKnown RBP23.67■■□□□ 1.38
TSPAN3-208ENST00000560514 GPRC5DQ9NZD1 345 aa23.67■■□□□ 1.38
TSPAN3-208ENST00000560514 IBTKQ9P2D0 1353 aaPredicted RBP23.66■■□□□ 1.38
TSPAN3-208ENST00000560514 NEFMP07197 916 aa23.66■■□□□ 1.38
TSPAN3-208ENST00000560514 AOC3Q16853 763 aa23.66■■□□□ 1.38
TSPAN3-208ENST00000560514 PNISRQ8TF01 805 aaKnown RBP23.66■■□□□ 1.38
TSPAN3-208ENST00000560514 VPS33BQ9H267 617 aa23.66■■□□□ 1.38
TSPAN3-208ENST00000560514 MIS18AQ9NYP9 233 aa23.66■■□□□ 1.38
TSPAN3-208ENST00000560514 RIC1Q4ADV7 1423 aa23.66■■□□□ 1.38
TSPAN3-208ENST00000560514 SUSD4Q5VX71 490 aa23.65■■□□□ 1.38
TSPAN3-208ENST00000560514 PPP1R42Q7Z4L9 355 aa23.65■■□□□ 1.38
TSPAN3-208ENST00000560514 SAPCD2Q86UD0 394 aa23.65■■□□□ 1.38
TSPAN3-208ENST00000560514 SUPT20HQ8NEM7 779 aa23.65■■□□□ 1.38
TSPAN3-208ENST00000560514 ZBTB3Q9H5J0 574 aa23.65■■□□□ 1.38
TSPAN3-208ENST00000560514 CASP8AP2Q9UKL3 1982 aa23.65■■□□□ 1.38
TSPAN3-208ENST00000560514 MYL6BP14649 208 aa23.64■■□□□ 1.37
TSPAN3-208ENST00000560514 NLRP3Q96P20 1036 aa23.64■■□□□ 1.37
TSPAN3-208ENST00000560514 MCOLN1Q9GZU1 580 aa23.64■■□□□ 1.37
TSPAN3-208ENST00000560514 ZNF408Q9H9D4 720 aa23.64■■□□□ 1.37
TSPAN3-208ENST00000560514 BRPF1P55201 1214 aaPredicted RBP23.63■■□□□ 1.37
TSPAN3-208ENST00000560514 TTLL7Q6ZT98 887 aa23.63■■□□□ 1.37
TSPAN3-208ENST00000560514 HHIPL1Q96JK4 782 aa23.63■■□□□ 1.37
TSPAN3-208ENST00000560514 BCL2L13Q9BXK5 485 aa23.63■■□□□ 1.37
TSPAN3-208ENST00000560514 ZNRF3Q9ULT6 936 aa23.63■■□□□ 1.37
TSPAN3-208ENST00000560514 UBN2Q6ZU65 1347 aa23.62■■□□□ 1.37
TSPAN3-208ENST00000560514 GLIS2Q9BZE0 524 aaPredicted RBP23.62■■□□□ 1.37
TSPAN3-208ENST00000560514 PCDH10Q9P2E7 1040 aa23.62■■□□□ 1.37
TSPAN3-208ENST00000560514 ATP6V0A2Q9Y487 856 aa23.62■■□□□ 1.37
TSPAN3-208ENST00000560514 GMPSP49915 693 aaPredicted RBP23.61■■□□□ 1.37
TSPAN3-208ENST00000560514 CXCL9Q07325 125 aa23.61■■□□□ 1.37
TSPAN3-208ENST00000560514 DGKZQ13574 1117 aa23.61■■□□□ 1.37
TSPAN3-208ENST00000560514 PARP10Q53GL7 1025 aa23.6■■□□□ 1.37
TSPAN3-208ENST00000560514 NTSR2O95665 410 aa23.59■■□□□ 1.37
TSPAN3-208ENST00000560514 TNIP1Q15025 636 aa23.59■■□□□ 1.37
TSPAN3-208ENST00000560514 CIAPIN1Q6FI81 312 aa23.59■■□□□ 1.37
TSPAN3-208ENST00000560514 DPP8Q6V1X1 898 aaPredicted RBP23.59■■□□□ 1.37
TSPAN3-208ENST00000560514 CDC37L1Q7L3B6 337 aa23.59■■□□□ 1.37
TSPAN3-208ENST00000560514 ZNF34Q8IZ26 560 aa23.59■■□□□ 1.37
TSPAN3-208ENST00000560514 ZC3H15Q8WU90 426 aaKnown RBP23.59■■□□□ 1.37
TSPAN3-208ENST00000560514 CDHR2Q9BYE9 1310 aa23.59■■□□□ 1.37
TSPAN3-208ENST00000560514 GIGYF2Q6Y7W6 1299 aaKnown RBP23.58■■□□□ 1.37
TSPAN3-208ENST00000560514 SLC51AQ86UW1 340 aa23.58■■□□□ 1.37
TSPAN3-208ENST00000560514 KDM3BQ7LBC6 1761 aa23.57■■□□□ 1.36
TSPAN3-208ENST00000560514 NOGQ13253 232 aa23.57■■□□□ 1.36
TSPAN3-208ENST00000560514 C3orf67Q6ZVT6 689 aa23.57■■□□□ 1.36
TSPAN3-208ENST00000560514 UTP14AQ9BVJ6 771 aaKnown RBP23.57■■□□□ 1.36
TSPAN3-208ENST00000560514 EIF4A1P60842 406 aaKnown RBP23.56■■□□□ 1.36
TSPAN3-208ENST00000560514 MPNDQ8N594 471 aa23.56■■□□□ 1.36
TSPAN3-208ENST00000560514 PGAP2Q9UHJ9 254 aa23.56■■□□□ 1.36
TSPAN3-208ENST00000560514 H7C1D1 291 aa23.55■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms