RNA–Protein interactions for RNA: ENST00000559494.1

TSPAN3-207, Transcript of tetraspanin 3, humanhuman

TSL 5 BASIC

Gene TSPAN3, Length 1,326 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN3-207ENST00000559494 SYNE4Q8N205 404 aa25.89■■□□□ 1.74
TSPAN3-207ENST00000559494 F6X3S4 739 aa25.88■■□□□ 1.73
TSPAN3-207ENST00000559494 IGKV5-2P06315 115 aa25.88■■□□□ 1.73
TSPAN3-207ENST00000559494 PDE6BP35913 854 aa25.88■■□□□ 1.73
TSPAN3-207ENST00000559494 C2CD5Q86YS7 1000 aa25.88■■□□□ 1.73
TSPAN3-207ENST00000559494 DNAAF4Q8WXU2 420 aa25.88■■□□□ 1.73
TSPAN3-207ENST00000559494 SMC4Q9NTJ3 1288 aa25.88■■□□□ 1.73
TSPAN3-207ENST00000559494 TRMT112Q9UI30 125 aaKnown RBP25.88■■□□□ 1.73
TSPAN3-207ENST00000559494 WWC3Q9ULE0 1092 aa25.88■■□□□ 1.73
TSPAN3-207ENST00000559494 ABCC12Q96J65 1359 aa25.88■■□□□ 1.73
TSPAN3-207ENST00000559494 GOLGB1Q14789 3259 aaKnown RBP25.87■■□□□ 1.73
TSPAN3-207ENST00000559494 KLRG2A4D1S0 409 aaPredicted RBP25.87■■□□□ 1.73
TSPAN3-207ENST00000559494 H0YIN7 160 aa25.87■■□□□ 1.73
TSPAN3-207ENST00000559494 SLC10A5Q5PT55 438 aa25.87■■□□□ 1.73
TSPAN3-207ENST00000559494 CCDC191Q8NCU4 936 aa25.87■■□□□ 1.73
TSPAN3-207ENST00000559494 PDZRN3Q9UPQ7 1066 aa25.86■■□□□ 1.73
TSPAN3-207ENST00000559494 BRPF1P55201 1214 aaPredicted RBP25.85■■□□□ 1.73
TSPAN3-207ENST00000559494 NEXNQ0ZGT2 675 aa25.85■■□□□ 1.73
TSPAN3-207ENST00000559494 FAM89AQ96GI7 184 aa25.85■■□□□ 1.73
TSPAN3-207ENST00000559494 CWC25Q9NXE8 425 aaPredicted RBP25.85■■□□□ 1.73
TSPAN3-207ENST00000559494 PIM2Q9P1W9 311 aa25.85■■□□□ 1.73
TSPAN3-207ENST00000559494 RNF123Q5XPI4 1314 aa25.84■■□□□ 1.73
TSPAN3-207ENST00000559494 NEURL1BA8MQ27 555 aa25.84■■□□□ 1.73
TSPAN3-207ENST00000559494 YBX3P16989 372 aaKnown RBP eCLIP25.84■■□□□ 1.735e-9■■■□□ 17.7
TSPAN3-207ENST00000559494 GPR162Q16538 588 aa25.84■■□□□ 1.73
TSPAN3-207ENST00000559494 CWF19L2Q2TBE0 894 aaKnown RBP25.84■■□□□ 1.73
TSPAN3-207ENST00000559494 PELP1Q8IZL8 1130 aaKnown RBP25.84■■□□□ 1.73
TSPAN3-207ENST00000559494 YTHDC1Q96MU7 727 aaKnown RBP25.84■■□□□ 1.73
TSPAN3-207ENST00000559494 SH3TC1Q8TE82 1336 aa25.83■■□□□ 1.73
TSPAN3-207ENST00000559494 SRGNP10124 158 aa25.83■■□□□ 1.73
TSPAN3-207ENST00000559494 PTPRCP08575 1304 aa25.82■■□□□ 1.72
TSPAN3-207ENST00000559494 HCLS1P14317 486 aaPredicted RBP25.82■■□□□ 1.72
TSPAN3-207ENST00000559494 RTL5Q5HYW3 569 aaPredicted RBP25.82■■□□□ 1.72
TSPAN3-207ENST00000559494 BEND3Q5T5X7 828 aa25.82■■□□□ 1.72
TSPAN3-207ENST00000559494 C3orf67Q6ZVT6 689 aa25.82■■□□□ 1.72
TSPAN3-207ENST00000559494 LINS1Q8NG48 757 aa25.82■■□□□ 1.72
TSPAN3-207ENST00000559494 NOB1Q9ULX3 412 aaKnown RBP25.82■■□□□ 1.72
TSPAN3-207ENST00000559494 BCAR3O75815 825 aa25.81■■□□□ 1.72
TSPAN3-207ENST00000559494 ZBTB38Q8NAP3 1195 aaPredicted RBP25.81■■□□□ 1.72
TSPAN3-207ENST00000559494 JARID2Q92833 1246 aaPredicted RBP25.81■■□□□ 1.72
TSPAN3-207ENST00000559494 ZNF622Q969S3 477 aaKnown RBP eCLIP25.81■■□□□ 1.72
TSPAN3-207ENST00000559494 BRCA1P38398 1863 aaKnown RBP25.8■■□□□ 1.72
TSPAN3-207ENST00000559494 DCAF8L1A6NGE4 600 aa25.8■■□□□ 1.72
TSPAN3-207ENST00000559494 PCCAP05165 728 aaPredicted RBP25.8■■□□□ 1.72
TSPAN3-207ENST00000559494 MASTLQ96GX5 879 aa25.8■■□□□ 1.72
TSPAN3-207ENST00000559494 BCS1LQ9Y276 419 aa25.8■■□□□ 1.72
TSPAN3-207ENST00000559494 RIC1Q4ADV7 1423 aa25.79■■□□□ 1.72
TSPAN3-207ENST00000559494 GCKRQ14397 625 aa25.79■■□□□ 1.72
TSPAN3-207ENST00000559494 CRY2Q49AN0 593 aa25.79■■□□□ 1.72
TSPAN3-207ENST00000559494 DALRD3Q5D0E6 543 aaKnown RBP25.79■■□□□ 1.72
TSPAN3-207ENST00000559494 SLC4A10Q6U841 1118 aa25.79■■□□□ 1.72
TSPAN3-207ENST00000559494 NLRP3Q96P20 1036 aa25.79■■□□□ 1.72
TSPAN3-207ENST00000559494 COL11A2P13942 1736 aaPredicted RBP25.78■■□□□ 1.72
TSPAN3-207ENST00000559494 STYK1Q6J9G0 422 aa25.78■■□□□ 1.72
TSPAN3-207ENST00000559494 TTLL6Q8N841 843 aa25.78■■□□□ 1.72
TSPAN3-207ENST00000559494 TNRC6CQ9HCJ0 1690 aaKnown RBP25.78■■□□□ 1.72
TSPAN3-207ENST00000559494 H7C1W4 665 aa25.77■■□□□ 1.72
TSPAN3-207ENST00000559494 IRS4O14654 1257 aaPredicted RBP25.77■■□□□ 1.72
TSPAN3-207ENST00000559494 NPR1P16066 1061 aa25.77■■□□□ 1.72
TSPAN3-207ENST00000559494 DLEC1Q9Y238 1755 aa25.76■■□□□ 1.71
TSPAN3-207ENST00000559494 CNKSR1Q969H4 720 aa25.75■■□□□ 1.71
TSPAN3-207ENST00000559494 UTRNP46939 3433 aa25.75■■□□□ 1.71
TSPAN3-207ENST00000559494 HOXA10P31260 410 aaPredicted RBP25.74■■□□□ 1.71
TSPAN3-207ENST00000559494 SRCIN1Q9C0H9 1055 aa25.74■■□□□ 1.71
TSPAN3-207ENST00000559494 GRIN3BO60391 1043 aa25.73■■□□□ 1.71
TSPAN3-207ENST00000559494 ALDH1L1O75891 902 aa25.73■■□□□ 1.71
TSPAN3-207ENST00000559494 CASP7P55210 303 aa25.73■■□□□ 1.71
TSPAN3-207ENST00000559494 ARHGAP45Q92619 1136 aa25.73■■□□□ 1.71
TSPAN3-207ENST00000559494 KIF16BQ96L93 1317 aa25.72■■□□□ 1.71
TSPAN3-207ENST00000559494 CDHR2Q9BYE9 1310 aa25.72■■□□□ 1.71
TSPAN3-207ENST00000559494 SF3B3Q15393 1217 aaKnown RBP25.72■■□□□ 1.71
TSPAN3-207ENST00000559494 RPGRQ92834 1020 aaKnown RBP25.72■■□□□ 1.71
TSPAN3-207ENST00000559494 API5Q9BZZ5 524 aaKnown RBP25.72■■□□□ 1.71
TSPAN3-207ENST00000559494 DDX60Q8IY21 1712 aaKnown RBP25.72■■□□□ 1.71
TSPAN3-207ENST00000559494 SLX4Q8IY92 1834 aa25.71■■□□□ 1.71
TSPAN3-207ENST00000559494 UBE3BQ7Z3V4 1068 aa25.71■■□□□ 1.71
TSPAN3-207ENST00000559494 LAMB2P55268 1798 aa25.71■■□□□ 1.71
TSPAN3-207ENST00000559494 PDE8AO60658 829 aa25.7■■□□□ 1.71
TSPAN3-207ENST00000559494 ALDH1B1P30837 517 aa25.7■■□□□ 1.71
TSPAN3-207ENST00000559494 PRPF40BQ6NWY9 871 aaKnown RBP25.7■■□□□ 1.71
TSPAN3-207ENST00000559494 FRAT1Q92837 279 aaPredicted RBP25.7■■□□□ 1.71
TSPAN3-207ENST00000559494 RBM17Q96I25 401 aaKnown RBP25.7■■□□□ 1.71
TSPAN3-207ENST00000559494 CRAMP1Q96RY5 1269 aa25.7■■□□□ 1.71
TSPAN3-207ENST00000559494 IPO8O15397 1037 aaKnown RBP25.69■■□□□ 1.7
TSPAN3-207ENST00000559494 HSP90B1P14625 803 aaKnown RBP25.69■■□□□ 1.7
TSPAN3-207ENST00000559494 TNNQ9UQP3 1299 aa25.69■■□□□ 1.7
TSPAN3-207ENST00000559494 ARFGEF1Q9Y6D6 1849 aa25.69■■□□□ 1.7
TSPAN3-207ENST00000559494 C7orf43Q8WVR3 580 aa25.68■■□□□ 1.7
TSPAN3-207ENST00000559494 ZNF219Q9P2Y4 722 aaPredicted RBP25.68■■□□□ 1.7
TSPAN3-207ENST00000559494 GRM8O00222 908 aa25.67■■□□□ 1.7
TSPAN3-207ENST00000559494 C21orf2O43822 256 aa25.67■■□□□ 1.7
TSPAN3-207ENST00000559494 TRIM27P14373 513 aa25.66■■□□□ 1.7
TSPAN3-207ENST00000559494 ATF7IPQ6VMQ6 1270 aa25.66■■□□□ 1.7
TSPAN3-207ENST00000559494 ARHGAP27Q6ZUM4 889 aa25.66■■□□□ 1.7
TSPAN3-207ENST00000559494 C9orf78Q9NZ63 289 aaPredicted RBP25.66■■□□□ 1.7
TSPAN3-207ENST00000559494 CACNA1SQ13698 1873 aa25.66■■□□□ 1.7
TSPAN3-207ENST00000559494 DDX46Q7L014 1031 aaKnown RBP25.65■■□□□ 1.7
TSPAN3-207ENST00000559494 PLA2G12BQ9BX93 195 aa25.65■■□□□ 1.7
TSPAN3-207ENST00000559494 RCAN3Q9UKA8 241 aa25.65■■□□□ 1.7
TSPAN3-207ENST00000559494 ABCC4O15439 1325 aa25.65■■□□□ 1.7
Retrieved 100 of 20,778 RNA–protein pairs in 81.5 ms