RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 VRTNQ9H8Y1 702 aa10.14□□□□□ -0.79
VPS13C-208ENST00000559119 USP17L15C9J2P7 530 aa10.13□□□□□ -0.79
VPS13C-208ENST00000559119 USP17L10C9JJH3 530 aa10.13□□□□□ -0.79
VPS13C-208ENST00000559119 USP17L13C9JLJ4 530 aa10.13□□□□□ -0.79
VPS13C-208ENST00000559119 USP17L12C9JPN9 530 aa10.13□□□□□ -0.79
VPS13C-208ENST00000559119 USP17L11C9JVI0 530 aa10.13□□□□□ -0.79
VPS13C-208ENST00000559119 USP17L21D6R901 530 aa10.13□□□□□ -0.79
VPS13C-208ENST00000559119 USP17L18D6R9N7 530 aa10.13□□□□□ -0.79
VPS13C-208ENST00000559119 USP17L22D6RA61 530 aa10.13□□□□□ -0.79
VPS13C-208ENST00000559119 USP17L17D6RBQ6 530 aa10.13□□□□□ -0.79
VPS13C-208ENST00000559119 USP17L19D6RCP7 530 aa10.13□□□□□ -0.79
VPS13C-208ENST00000559119 USP17L20D6RJB6 530 aa10.13□□□□□ -0.79
VPS13C-208ENST00000559119 USP17L24Q0WX57 530 aa10.13□□□□□ -0.79
VPS13C-208ENST00000559119 KANK4Q5T7N3 995 aaPredicted RBP10.13□□□□□ -0.79
VPS13C-208ENST00000559119 FAM196BA6NMK8 535 aa10.12□□□□□ -0.79
VPS13C-208ENST00000559119 LGR5O75473 907 aa10.12□□□□□ -0.79
VPS13C-208ENST00000559119 TBC1D8BQ0IIM8 1120 aa10.12□□□□□ -0.79
VPS13C-208ENST00000559119 RTN1Q16799 776 aa10.12□□□□□ -0.79
VPS13C-208ENST00000559119 ANKMY2Q8IV38 441 aa10.12□□□□□ -0.79
VPS13C-208ENST00000559119 MICALL1Q8N3F8 863 aa10.12□□□□□ -0.79
VPS13C-208ENST00000559119 STARD13Q9Y3M8 1113 aa10.12□□□□□ -0.79
VPS13C-208ENST00000559119 ALBP02768 609 aa10.11□□□□□ -0.79
VPS13C-208ENST00000559119 IGFBP4P22692 258 aa10.11□□□□□ -0.79
VPS13C-208ENST00000559119 UBE2OQ9C0C9 1292 aaKnown RBP10.11□□□□□ -0.79
VPS13C-208ENST00000559119 IGFLR1Q9H665 355 aa10.11□□□□□ -0.79
VPS13C-208ENST00000559119 PRDM6Q9NQX0 595 aa10.11□□□□□ -0.79
VPS13C-208ENST00000559119 APBA3O96018 575 aa10.1□□□□□ -0.79
VPS13C-208ENST00000559119 GATA4P43694 442 aa10.1□□□□□ -0.79
VPS13C-208ENST00000559119 IER5Q5VY09 327 aa10.1□□□□□ -0.79
VPS13C-208ENST00000559119 C8orf86Q6ZUL3 223 aa10.1□□□□□ -0.79
VPS13C-208ENST00000559119 PNMA5Q96PV4 448 aa10.1□□□□□ -0.79
VPS13C-208ENST00000559119 EFCC1Q9HA90 598 aa10.1□□□□□ -0.79
VPS13C-208ENST00000559119 TRIM28Q13263 835 aaKnown RBP10.09□□□□□ -0.79
VPS13C-208ENST00000559119 TGFBR3LH3BV60 316 aa10.08□□□□□ -0.8
VPS13C-208ENST00000559119 DOC2BQ14184 412 aa10.08□□□□□ -0.8
VPS13C-208ENST00000559119 FAM229AH3BQW9 127 aa10.07□□□□□ -0.8
VPS13C-208ENST00000559119 LILRB5O75023 590 aa10.07□□□□□ -0.8
VPS13C-208ENST00000559119 EPB42P16452 691 aa10.07□□□□□ -0.8
VPS13C-208ENST00000559119 COL9A3Q14050 684 aaPredicted RBP10.07□□□□□ -0.8
VPS13C-208ENST00000559119 VTI1AQ96AJ9 217 aa10.07□□□□□ -0.8
VPS13C-208ENST00000559119 CCINQ13939 588 aa10.06□□□□□ -0.8
VPS13C-208ENST00000559119 C20orf204Q6ZNR8 217 aa10.06□□□□□ -0.8
VPS13C-208ENST00000559119 GSX2Q9BZM3 304 aa10.06□□□□□ -0.8
VPS13C-208ENST00000559119 SLC6A14Q9UN76 642 aa10.06□□□□□ -0.8
VPS13C-208ENST00000559119 GTF3C5Q9Y5Q8 519 aaPredicted RBP10.06□□□□□ -0.8
VPS13C-208ENST00000559119 NID1P14543 1247 aa10.05□□□□□ -0.8
VPS13C-208ENST00000559119 TRAPPC3LQ5T215 181 aa10.05□□□□□ -0.8
VPS13C-208ENST00000559119 NACC1Q96RE7 527 aa10.05□□□□□ -0.8
VPS13C-208ENST00000559119 NFKB1P19838 968 aa10.04□□□□□ -0.8
VPS13C-208ENST00000559119 FAM200AQ8TCP9 573 aa10.04□□□□□ -0.8
VPS13C-208ENST00000559119 ARXQ96QS3 562 aa10.04□□□□□ -0.8
VPS13C-208ENST00000559119 JPH1Q9HDC5 661 aaPredicted RBP10.04□□□□□ -0.8
VPS13C-208ENST00000559119 DNAJB12Q9NXW2 375 aaKnown RBP10.04□□□□□ -0.8
VPS13C-208ENST00000559119 KLK14Q9P0G3 267 aa10.04□□□□□ -0.8
VPS13C-208ENST00000559119 ZNF777Q9ULD5 760 aaPredicted RBP10.04□□□□□ -0.8
VPS13C-208ENST00000559119 BCS1LQ9Y276 419 aa10.04□□□□□ -0.8
VPS13C-208ENST00000559119 FOXO3O43524 673 aa10.03□□□□□ -0.8
VPS13C-208ENST00000559119 DGKZQ13574 1117 aa10.03□□□□□ -0.8
VPS13C-208ENST00000559119 DMGDHQ9UI17 866 aaKnown RBP10.03□□□□□ -0.8
VPS13C-208ENST00000559119 RFX1P22670 979 aa10.02□□□□□ -0.81
VPS13C-208ENST00000559119 WEE1P30291 646 aa10.02□□□□□ -0.81
VPS13C-208ENST00000559119 IDH3AP50213 366 aa10.02□□□□□ -0.81
VPS13C-208ENST00000559119 CFAP70Q5T0N1 1121 aa10.02□□□□□ -0.81
VPS13C-208ENST00000559119 NUDT8Q8WV74 236 aa10.02□□□□□ -0.81
VPS13C-208ENST00000559119 SEMA6BQ9H3T3 888 aa10.02□□□□□ -0.81
VPS13C-208ENST00000559119 GRIK4Q16099 956 aa10.01□□□□□ -0.81
VPS13C-208ENST00000559119 CDCA8Q53HL2 280 aa10.01□□□□□ -0.81
VPS13C-208ENST00000559119 UTP3Q9NQZ2 479 aaKnown RBP eCLIP10.01□□□□□ -0.81
VPS13C-208ENST00000559119 INPP5BP32019 993 aa10□□□□□ -0.81
VPS13C-208ENST00000559119 ARSDP51689 593 aa10□□□□□ -0.81
VPS13C-208ENST00000559119 PCSK7Q16549 785 aa10□□□□□ -0.81
VPS13C-208ENST00000559119 PSAPL1Q6NUJ1 521 aa10□□□□□ -0.81
VPS13C-208ENST00000559119 QTRT2Q9H974 415 aaKnown RBP10□□□□□ -0.81
VPS13C-208ENST00000559119 RGS9O75916 674 aaPredicted RBP9.99□□□□□ -0.81
VPS13C-208ENST00000559119 RAC1P63000 192 aa9.99□□□□□ -0.81
VPS13C-208ENST00000559119 C11orf91Q3C1V1 193 aa9.99□□□□□ -0.81
VPS13C-208ENST00000559119 MICAL2O94851 1124 aa9.98□□□□□ -0.81
VPS13C-208ENST00000559119 KRT25Q7Z3Z0 450 aa9.98□□□□□ -0.81
VPS13C-208ENST00000559119 A0A0A0MRY4 1105 aa9.97□□□□□ -0.81
VPS13C-208ENST00000559119 C9orf172C9J069 976 aa9.97□□□□□ -0.81
VPS13C-208ENST00000559119 GRNP28799 593 aaKnown RBP9.97□□□□□ -0.81
VPS13C-208ENST00000559119 XP32Q5T750 250 aa9.97□□□□□ -0.81
VPS13C-208ENST00000559119 FAM35AQ86V20 835 aa9.97□□□□□ -0.81
VPS13C-208ENST00000559119 MYO19Q96H55 970 aa9.97□□□□□ -0.81
VPS13C-208ENST00000559119 TPSG1Q9NRR2 321 aa9.97□□□□□ -0.81
VPS13C-208ENST00000559119 NAGPAQ9UK23 515 aa9.97□□□□□ -0.81
VPS13C-208ENST00000559119 NOVA2Q9UNW9 492 aaKnown RBP9.97□□□□□ -0.81
VPS13C-208ENST00000559119 MAP3K6O95382 1288 aa9.96□□□□□ -0.82
VPS13C-208ENST00000559119 ELNP15502 786 aa9.96□□□□□ -0.82
VPS13C-208ENST00000559119 AFF1P51825 1210 aaKnown RBP9.96□□□□□ -0.82
VPS13C-208ENST00000559119 C11orf16Q9NQ32 467 aa9.96□□□□□ -0.82
VPS13C-208ENST00000559119 CPB1P15086 417 aa9.95□□□□□ -0.82
VPS13C-208ENST00000559119 RSPO4Q2I0M5 234 aaPredicted RBP9.95□□□□□ -0.82
VPS13C-208ENST00000559119 DHX32Q7L7V1 743 aaKnown RBP9.95□□□□□ -0.82
VPS13C-208ENST00000559119 IFT43Q96FT9 208 aa9.95□□□□□ -0.82
VPS13C-208ENST00000559119 RARAP10276 462 aa9.94□□□□□ -0.82
VPS13C-208ENST00000559119 TARSP26639 723 aaKnown RBP9.94□□□□□ -0.82
VPS13C-208ENST00000559119 DMRTC2Q8IXT2 367 aaPredicted RBP9.94□□□□□ -0.82
VPS13C-208ENST00000559119 Q8N3U1 123 aa9.94□□□□□ -0.82
VPS13C-208ENST00000559119 ZFATQ9P243 1243 aa9.94□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms