RNA–Protein interactions for RNA: ENST00000558088.1

VPS13C-205, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 549 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-205ENST00000558088 NGLY1Q96IV0 654 aa6.22□□□□□ -1.41
VPS13C-205ENST00000558088 STARD13Q9Y3M8 1113 aa6.22□□□□□ -1.41
VPS13C-205ENST00000558088 ATAD2Q6PL18 1390 aa6.21□□□□□ -1.41
VPS13C-205ENST00000558088 SCO2A0A1W2PP80 73 aa6.21□□□□□ -1.42
VPS13C-205ENST00000558088 EPB42P16452 691 aa6.21□□□□□ -1.42
VPS13C-205ENST00000558088 C9orf172C9J069 976 aa6.2□□□□□ -1.42
VPS13C-205ENST00000558088 NID1P14543 1247 aa6.2□□□□□ -1.42
VPS13C-205ENST00000558088 C8orf86Q6ZUL3 223 aa6.2□□□□□ -1.42
VPS13C-205ENST00000558088 HINFPQ9BQA5 517 aa6.2□□□□□ -1.42
VPS13C-205ENST00000558088 C2orf49Q9BVC5 232 aaPredicted RBP6.2□□□□□ -1.42
VPS13C-205ENST00000558088 JPH1Q9HDC5 661 aaPredicted RBP6.2□□□□□ -1.42
VPS13C-205ENST00000558088 TPSG1Q9NRR2 321 aa6.2□□□□□ -1.42
VPS13C-205ENST00000558088 SLC6A14Q9UN76 642 aa6.2□□□□□ -1.42
VPS13C-205ENST00000558088 PRKCSHP14314 528 aaPredicted RBP6.19□□□□□ -1.42
VPS13C-205ENST00000558088 ELNP15502 786 aa6.19□□□□□ -1.42
VPS13C-205ENST00000558088 NRG1Q02297 640 aaPredicted RBP6.19□□□□□ -1.42
VPS13C-205ENST00000558088 GRIK4Q16099 956 aa6.19□□□□□ -1.42
VPS13C-205ENST00000558088 PCSK7Q16549 785 aa6.19□□□□□ -1.42
VPS13C-205ENST00000558088 RTN1Q16799 776 aa6.19□□□□□ -1.42
VPS13C-205ENST00000558088 RSPO4Q2I0M5 234 aaPredicted RBP6.19□□□□□ -1.42
VPS13C-205ENST00000558088 IER5Q5VY09 327 aa6.19□□□□□ -1.42
VPS13C-205ENST00000558088 GLMNQ92990 594 aa6.19□□□□□ -1.42
VPS13C-205ENST00000558088 TFIP11Q9UBB9 837 aaKnown RBP6.19□□□□□ -1.42
VPS13C-205ENST00000558088 TGFBR3LH3BV60 316 aa6.18□□□□□ -1.42
VPS13C-205ENST00000558088 C21orf2O43822 256 aa6.18□□□□□ -1.42
VPS13C-205ENST00000558088 CCINQ13939 588 aa6.18□□□□□ -1.42
VPS13C-205ENST00000558088 COL9A3Q14050 684 aaPredicted RBP6.18□□□□□ -1.42
VPS13C-205ENST00000558088 C20orf204Q6ZNR8 217 aa6.18□□□□□ -1.42
VPS13C-205ENST00000558088 PROSER2Q86WR7 435 aaPredicted RBP6.18□□□□□ -1.42
VPS13C-205ENST00000558088 MAFBQ9Y5Q3 323 aaPredicted RBP6.18□□□□□ -1.42
VPS13C-205ENST00000558088 GTF3C5Q9Y5Q8 519 aaPredicted RBP6.18□□□□□ -1.42
VPS13C-205ENST00000558088 DYRK3O43781 588 aa6.17□□□□□ -1.42
VPS13C-205ENST00000558088 RGS9O75916 674 aaPredicted RBP6.17□□□□□ -1.42
VPS13C-205ENST00000558088 NKAPLQ5M9Q1 402 aa6.17□□□□□ -1.42
VPS13C-205ENST00000558088 PSAPL1Q6NUJ1 521 aa6.17□□□□□ -1.42
VPS13C-205ENST00000558088 NUDT8Q8WV74 236 aa6.17□□□□□ -1.42
VPS13C-205ENST00000558088 VTI1AQ96AJ9 217 aa6.17□□□□□ -1.42
VPS13C-205ENST00000558088 DNAJB12Q9NXW2 375 aaKnown RBP6.17□□□□□ -1.42
VPS13C-205ENST00000558088 A0A0A0MRY4 1105 aa6.16□□□□□ -1.42
VPS13C-205ENST00000558088 NFKB1P19838 968 aa6.16□□□□□ -1.42
VPS13C-205ENST00000558088 ARID4AP29374 1257 aaPredicted RBP6.16□□□□□ -1.42
VPS13C-205ENST00000558088 CALR3Q96L12 384 aaKnown RBP6.16□□□□□ -1.42
VPS13C-205ENST00000558088 USP21Q9UK80 565 aa6.16□□□□□ -1.42
VPS13C-205ENST00000558088 DKK1O94907 266 aa6.15□□□□□ -1.42
VPS13C-205ENST00000558088 IGFBP4P22692 258 aa6.15□□□□□ -1.42
VPS13C-205ENST00000558088 ITGB7P26010 798 aa6.15□□□□□ -1.42
VPS13C-205ENST00000558088 DPYDQ12882 1025 aa6.15□□□□□ -1.42
VPS13C-205ENST00000558088 MBTPS1Q14703 1052 aa6.15□□□□□ -1.42
VPS13C-205ENST00000558088 TXNRD3Q86VQ6 643 aa6.15□□□□□ -1.42
VPS13C-205ENST00000558088 LENG1Q96BZ8 264 aaPredicted RBP6.15□□□□□ -1.42
VPS13C-205ENST00000558088 KRTAP4-8Q9BYQ9 185 aa6.15□□□□□ -1.42
VPS13C-205ENST00000558088 GSX2Q9BZM3 304 aa6.15□□□□□ -1.42
VPS13C-205ENST00000558088 ADGRE1Q14246 886 aa6.14□□□□□ -1.43
VPS13C-205ENST00000558088 FAM35AQ86V20 835 aa6.14□□□□□ -1.43
VPS13C-205ENST00000558088 CLUAP1Q96AJ1 413 aa6.14□□□□□ -1.43
VPS13C-205ENST00000558088 FAM196BA6NMK8 535 aa6.13□□□□□ -1.43
VPS13C-205ENST00000558088 MAP3K6O95382 1288 aa6.13□□□□□ -1.43
VPS13C-205ENST00000558088 H2AFB1P0C5Y9 115 aa6.13□□□□□ -1.43
VPS13C-205ENST00000558088 H2AFB2P0C5Z0 115 aa6.13□□□□□ -1.43
VPS13C-205ENST00000558088 SELPP16109 830 aa6.13□□□□□ -1.43
VPS13C-205ENST00000558088 AFF1P51825 1210 aaKnown RBP6.13□□□□□ -1.43
VPS13C-205ENST00000558088 PTK7Q13308 1070 aa6.13□□□□□ -1.43
VPS13C-205ENST00000558088 PRSS36Q5K4E3 855 aa6.13□□□□□ -1.43
VPS13C-205ENST00000558088 ANKMY2Q8IV38 441 aa6.13□□□□□ -1.43
VPS13C-205ENST00000558088 DMRTC2Q8IXT2 367 aaPredicted RBP6.13□□□□□ -1.43
VPS13C-205ENST00000558088 PPP1R12CQ9BZL4 782 aa6.13□□□□□ -1.43
VPS13C-205ENST00000558088 VRTNQ9H8Y1 702 aa6.13□□□□□ -1.43
VPS13C-205ENST00000558088 UTP3Q9NQZ2 479 aaKnown RBP eCLIP6.13□□□□□ -1.43
VPS13C-205ENST00000558088 USP17L15C9J2P7 530 aa6.12□□□□□ -1.43
VPS13C-205ENST00000558088 USP17L10C9JJH3 530 aa6.12□□□□□ -1.43
VPS13C-205ENST00000558088 USP17L13C9JLJ4 530 aa6.12□□□□□ -1.43
VPS13C-205ENST00000558088 USP17L12C9JPN9 530 aa6.12□□□□□ -1.43
VPS13C-205ENST00000558088 USP17L11C9JVI0 530 aa6.12□□□□□ -1.43
VPS13C-205ENST00000558088 USP17L21D6R901 530 aa6.12□□□□□ -1.43
VPS13C-205ENST00000558088 USP17L18D6R9N7 530 aa6.12□□□□□ -1.43
VPS13C-205ENST00000558088 USP17L22D6RA61 530 aa6.12□□□□□ -1.43
VPS13C-205ENST00000558088 USP17L17D6RBQ6 530 aa6.12□□□□□ -1.43
VPS13C-205ENST00000558088 USP17L19D6RCP7 530 aa6.12□□□□□ -1.43
VPS13C-205ENST00000558088 USP17L20D6RJB6 530 aa6.12□□□□□ -1.43
VPS13C-205ENST00000558088 CPB1P15086 417 aa6.12□□□□□ -1.43
VPS13C-205ENST00000558088 IDH3AP50213 366 aa6.12□□□□□ -1.43
VPS13C-205ENST00000558088 ARSDP51689 593 aa6.12□□□□□ -1.43
VPS13C-205ENST00000558088 USP17L24Q0WX57 530 aa6.12□□□□□ -1.43
VPS13C-205ENST00000558088 CRTC2Q53ET0 693 aaPredicted RBP6.12□□□□□ -1.43
VPS13C-205ENST00000558088 ELMSAN1Q6PJG2 1045 aa6.12□□□□□ -1.43
VPS13C-205ENST00000558088 NBPF11Q86T75 865 aa6.12□□□□□ -1.43
VPS13C-205ENST00000558088 FMR1NBQ8N0W7 255 aaPredicted RBP6.12□□□□□ -1.43
VPS13C-205ENST00000558088 DTWD1Q8N5C7 304 aa6.12□□□□□ -1.43
VPS13C-205ENST00000558088 ZFP64Q9NPA5 681 aa6.12□□□□□ -1.43
VPS13C-205ENST00000558088 C11orf16Q9NQ32 467 aa6.12□□□□□ -1.43
VPS13C-205ENST00000558088 FRRS1LQ9P0K9 344 aa6.12□□□□□ -1.43
VPS13C-205ENST00000558088 NAGPAQ9UK23 515 aa6.12□□□□□ -1.43
VPS13C-205ENST00000558088 FOXO3O43524 673 aa6.11□□□□□ -1.43
VPS13C-205ENST00000558088 LMOD1P29536 600 aaPredicted RBP6.11□□□□□ -1.43
VPS13C-205ENST00000558088 DGKZQ13574 1117 aa6.11□□□□□ -1.43
VPS13C-205ENST00000558088 KRT25Q7Z3Z0 450 aa6.11□□□□□ -1.43
VPS13C-205ENST00000558088 WFDC8Q8IUA0 241 aa6.11□□□□□ -1.43
VPS13C-205ENST00000558088 TP53INP1Q96A56 240 aa6.11□□□□□ -1.43
VPS13C-205ENST00000558088 KLK14Q9P0G3 267 aa6.11□□□□□ -1.43
VPS13C-205ENST00000558088 LGR5O75473 907 aa6.1□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms