RNA–Protein interactions for RNA: ENST00000557782.1

TDP1-217, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 5

Gene TDP1, Length 318 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-217ENST00000557782 PRKAB1Q9Y478 270 aa5.31□□□□□ -1.56
TDP1-217ENST00000557782 COL4A3BPQ9Y5P4 624 aa5.31□□□□□ -1.56
TDP1-217ENST00000557782 FAM205CA6NFA0 338 aa5.3□□□□□ -1.56
TDP1-217ENST00000557782 PPP1R12AO14974 1030 aaPredicted RBP5.3□□□□□ -1.56
TDP1-217ENST00000557782 DNAJC6O75061 913 aa5.3□□□□□ -1.56
TDP1-217ENST00000557782 S1PR4O95977 384 aa5.3□□□□□ -1.56
TDP1-217ENST00000557782 PWP1Q13610 501 aa5.3□□□□□ -1.56
TDP1-217ENST00000557782 HIF1AQ16665 826 aa5.3□□□□□ -1.56
TDP1-217ENST00000557782 KIAA0825Q8IV33 1275 aa5.3□□□□□ -1.56
TDP1-217ENST00000557782 DHX37Q8IY37 1157 aaKnown RBP5.3□□□□□ -1.56
TDP1-217ENST00000557782 SNX29Q8TEQ0 813 aa5.3□□□□□ -1.56
TDP1-217ENST00000557782 SPON2Q9BUD6 331 aa5.3□□□□□ -1.56
TDP1-217ENST00000557782 OSBPL7Q9BZF2 842 aa5.3□□□□□ -1.56
TDP1-217ENST00000557782 PHACTR1Q9C0D0 580 aa5.3□□□□□ -1.56
TDP1-217ENST00000557782 GGNBP2Q9H3C7 697 aa5.3□□□□□ -1.56
TDP1-217ENST00000557782 KLHL42Q9P2K6 505 aa5.3□□□□□ -1.56
TDP1-217ENST00000557782 STRIP2Q9ULQ0 834 aa5.3□□□□□ -1.56
TDP1-217ENST00000557782 PPME1Q9Y570 386 aa5.3□□□□□ -1.56
TDP1-217ENST00000557782 USP3Q9Y6I4 520 aa5.3□□□□□ -1.56
TDP1-217ENST00000557782 A6NHS1 94 aa5.29□□□□□ -1.56
TDP1-217ENST00000557782 LILRA1O75019 489 aa5.29□□□□□ -1.56
TDP1-217ENST00000557782 IL2RAP01589 272 aa5.29□□□□□ -1.56
TDP1-217ENST00000557782 TRIM32Q13049 653 aa5.29□□□□□ -1.56
TDP1-217ENST00000557782 HSP90AB2PQ58FF8 381 aa5.29□□□□□ -1.56
TDP1-217ENST00000557782 SH3PXD2AQ5TCZ1 1133 aa5.29□□□□□ -1.56
TDP1-217ENST00000557782 CCDC116Q8IYX3 515 aa5.29□□□□□ -1.56
TDP1-217ENST00000557782 EHBP1Q8NDI1 1231 aa5.29□□□□□ -1.56
TDP1-217ENST00000557782 CNKSR1Q969H4 720 aa5.29□□□□□ -1.56
TDP1-217ENST00000557782 L3MBTL2Q969R5 705 aa5.29□□□□□ -1.56
TDP1-217ENST00000557782 CDK15Q96Q40 435 aa5.29□□□□□ -1.56
TDP1-217ENST00000557782 ESYT1Q9BSJ8 1104 aa5.29□□□□□ -1.56
TDP1-217ENST00000557782 NOC4LQ9BVI4 516 aaKnown RBP5.29□□□□□ -1.56
TDP1-217ENST00000557782 ZNF408Q9H9D4 720 aa5.29□□□□□ -1.56
TDP1-217ENST00000557782 SPC25Q9HBM1 224 aa5.29□□□□□ -1.56
TDP1-217ENST00000557782 IFT57Q9NWB7 429 aa5.29□□□□□ -1.56
TDP1-217ENST00000557782 PGPEP1Q9NXJ5 209 aa5.29□□□□□ -1.56
TDP1-217ENST00000557782 R3HCC1Q9Y3T6 440 aaKnown RBP5.29□□□□□ -1.56
TDP1-217ENST00000557782 GTF2E1P29083 439 aaPredicted RBP5.28□□□□□ -1.56
TDP1-217ENST00000557782 NASPP49321 788 aaPredicted RBP5.28□□□□□ -1.56
TDP1-217ENST00000557782 TAF7LQ5H9L4 462 aa5.28□□□□□ -1.56
TDP1-217ENST00000557782 PPP1R26Q5T8A7 1209 aaPredicted RBP5.28□□□□□ -1.56
TDP1-217ENST00000557782 C1orf53Q5VUE5 145 aa5.28□□□□□ -1.56
TDP1-217ENST00000557782 PI16Q6UXB8 463 aa5.28□□□□□ -1.56
TDP1-217ENST00000557782 ANKS3Q6ZW76 656 aa5.28□□□□□ -1.56
TDP1-217ENST00000557782 EPS8L3Q8TE67 593 aaKnown RBP5.28□□□□□ -1.56
TDP1-217ENST00000557782 ZDHHC1Q8WTX9 485 aa5.28□□□□□ -1.56
TDP1-217ENST00000557782 PSMD1Q99460 953 aa5.28□□□□□ -1.56
TDP1-217ENST00000557782 PCDH12Q9NPG4 1184 aa5.28□□□□□ -1.56
TDP1-217ENST00000557782 KBTBD4Q9NVX7 518 aa5.28□□□□□ -1.56
TDP1-217ENST00000557782 FNDC3AQ9Y2H6 1198 aaKnown RBP5.28□□□□□ -1.56
TDP1-217ENST00000557782 PLEKHD1A6NEE1 506 aa5.27□□□□□ -1.57
TDP1-217ENST00000557782 GADD45BO75293 160 aaPredicted RBP5.27□□□□□ -1.57
TDP1-217ENST00000557782 TNFRSF21O75509 655 aa5.27□□□□□ -1.57
TDP1-217ENST00000557782 IRS1P35568 1242 aa5.27□□□□□ -1.57
TDP1-217ENST00000557782 COL9A2Q14055 689 aaPredicted RBP5.27□□□□□ -1.57
TDP1-217ENST00000557782 PLEKHG4Q58EX7 1191 aa5.27□□□□□ -1.57
TDP1-217ENST00000557782 USPL1Q5W0Q7 1092 aa5.27□□□□□ -1.57
TDP1-217ENST00000557782 THSD4Q6ZMP0 1018 aa5.27□□□□□ -1.57
TDP1-217ENST00000557782 LRP10Q7Z4F1 713 aa5.27□□□□□ -1.57
TDP1-217ENST00000557782 RELL1Q8IUW5 271 aa5.27□□□□□ -1.57
TDP1-217ENST00000557782 ZNF516Q92618 1163 aa5.27□□□□□ -1.57
TDP1-217ENST00000557782 RNPC3Q96LT9 517 aaKnown RBP5.27□□□□□ -1.57
TDP1-217ENST00000557782 RSRP1Q9BUV0 290 aa5.27□□□□□ -1.57
TDP1-217ENST00000557782 NIFKQ9BYG3 293 aaKnown RBP5.27□□□□□ -1.57
TDP1-217ENST00000557782 COPRSQ9NQ92 184 aa5.27□□□□□ -1.57
TDP1-217ENST00000557782 FOXD3Q9UJU5 478 aaPredicted RBP5.27□□□□□ -1.57
TDP1-217ENST00000557782 TTF2Q9UNY4 1162 aaKnown RBP5.27□□□□□ -1.57
TDP1-217ENST00000557782 PHACTR2O75167 634 aa5.26□□□□□ -1.57
TDP1-217ENST00000557782 CDC45O75419 566 aa5.26□□□□□ -1.57
TDP1-217ENST00000557782 MICAL2O94851 1124 aa5.26□□□□□ -1.57
TDP1-217ENST00000557782 GSTT1P30711 240 aa5.26□□□□□ -1.57
TDP1-217ENST00000557782 CHMP4BP1P59074 171 aa5.26□□□□□ -1.57
TDP1-217ENST00000557782 NR5A1Q13285 461 aa5.26□□□□□ -1.57
TDP1-217ENST00000557782 CLN3Q13286 438 aa5.26□□□□□ -1.57
TDP1-217ENST00000557782 RAB33AQ14088 237 aa5.26□□□□□ -1.57
TDP1-217ENST00000557782 PDE12Q6L8Q7 609 aaKnown RBP5.26□□□□□ -1.57
TDP1-217ENST00000557782 NBPF10Q6P3W6 841 aaKnown RBP5.26□□□□□ -1.57
TDP1-217ENST00000557782 NXPE4Q6UWF7 544 aa5.26□□□□□ -1.57
TDP1-217ENST00000557782 XKR5Q6UX68 686 aa5.26□□□□□ -1.57
TDP1-217ENST00000557782 ZNF438Q7Z4V0 828 aa5.26□□□□□ -1.57
TDP1-217ENST00000557782 MPNDQ8N594 471 aa5.26□□□□□ -1.57
TDP1-217ENST00000557782 DEPDC7Q96QD5 511 aa5.26□□□□□ -1.57
TDP1-217ENST00000557782 BCO2Q9BYV7 579 aa5.26□□□□□ -1.57
TDP1-217ENST00000557782 ZFYVE28Q9HCC9 887 aa5.26□□□□□ -1.57
TDP1-217ENST00000557782 NPHS2Q9NP85 383 aa5.26□□□□□ -1.57
TDP1-217ENST00000557782 PPP4R2Q9NY27 417 aa5.26□□□□□ -1.57
TDP1-217ENST00000557782 SNTG2Q9NY99 539 aa5.26□□□□□ -1.57
TDP1-217ENST00000557782 EFR3BQ9Y2G0 817 aa5.26□□□□□ -1.57
TDP1-217ENST00000557782 PARP3Q9Y6F1 533 aa5.26□□□□□ -1.57
TDP1-217ENST00000557782 TGFBR3LH3BV60 316 aa5.25□□□□□ -1.57
TDP1-217ENST00000557782 ADH1CP00326 375 aa5.25□□□□□ -1.57
TDP1-217ENST00000557782 ADH1AP07327 375 aa5.25□□□□□ -1.57
TDP1-217ENST00000557782 GBP2P32456 591 aaPredicted RBP5.25□□□□□ -1.57
TDP1-217ENST00000557782 ADD1P35611 737 aaKnown RBP5.25□□□□□ -1.57
TDP1-217ENST00000557782 GRM5P41594 1212 aa5.25□□□□□ -1.57
TDP1-217ENST00000557782 SKOR1P84550 965 aa5.25□□□□□ -1.57
TDP1-217ENST00000557782 TJAP1Q5JTD0 557 aa5.25□□□□□ -1.57
TDP1-217ENST00000557782 ANKRD13DQ6ZTN6 518 aa5.25□□□□□ -1.57
TDP1-217ENST00000557782 PPARGC1BQ86YN6 1023 aaKnown RBP5.25□□□□□ -1.57
TDP1-217ENST00000557782 RHPN1Q8TCX5 695 aa5.25□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms