RNA–Protein interactions for RNA: ENST00000557478.5

NEDD1-212, Transcript of neural precursor cell expressed, developmentally down-regulated 1, humanhuman

TSL 5

Gene NEDD1, Length 595 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD1-212ENST00000557478 SLC10A5Q5PT55 438 aa22.65■■□□□ 1.22
NEDD1-212ENST00000557478 RBM17Q96I25 401 aaKnown RBP22.65■■□□□ 1.22
NEDD1-212ENST00000557478 IL16Q14005 1332 aa22.64■■□□□ 1.22
NEDD1-212ENST00000557478 ANKRD13DQ6ZTN6 518 aa22.64■■□□□ 1.21
NEDD1-212ENST00000557478 NUTM1Q86Y26 1132 aa22.64■■□□□ 1.21
NEDD1-212ENST00000557478 NECTIN2Q92692 538 aa22.64■■□□□ 1.21
NEDD1-212ENST00000557478 CRAMP1Q96RY5 1269 aa22.64■■□□□ 1.21
NEDD1-212ENST00000557478 HSP90B1P14625 803 aaKnown RBP22.63■■□□□ 1.21
NEDD1-212ENST00000557478 RBM46Q8TBY0 533 aaKnown RBP22.63■■□□□ 1.21
NEDD1-212ENST00000557478 ZNF219Q9P2Y4 722 aaPredicted RBP22.63■■□□□ 1.21
NEDD1-212ENST00000557478 VEGFAP15692 232 aaPredicted RBP22.62■■□□□ 1.21
NEDD1-212ENST00000557478 FKBP4Q02790 459 aaKnown RBP eCLIP22.62■■□□□ 1.21
NEDD1-212ENST00000557478 KRT24Q2M2I5 525 aa22.62■■□□□ 1.21
NEDD1-212ENST00000557478 CCDC30Q5VVM6 783 aa22.62■■□□□ 1.21
NEDD1-212ENST00000557478 COL11A2P13942 1736 aaPredicted RBP22.62■■□□□ 1.21
NEDD1-212ENST00000557478 NUP98P52948 1817 aa22.61■■□□□ 1.21
NEDD1-212ENST00000557478 ANXA1P04083 346 aa22.61■■□□□ 1.21
NEDD1-212ENST00000557478 HSPA6P17066 643 aa22.61■■□□□ 1.21
NEDD1-212ENST00000557478 GOLGA2Q08379 1002 aa22.61■■□□□ 1.21
NEDD1-212ENST00000557478 FSTL1Q12841 308 aa22.61■■□□□ 1.21
NEDD1-212ENST00000557478 NLRP10Q86W26 655 aa22.61■■□□□ 1.21
NEDD1-212ENST00000557478 NMRK2Q9NPI5 230 aa22.61■■□□□ 1.21
NEDD1-212ENST00000557478 ABCC12Q96J65 1359 aa22.61■■□□□ 1.21
NEDD1-212ENST00000557478 SH3TC1Q8TE82 1336 aa22.6■■□□□ 1.21
NEDD1-212ENST00000557478 TRIM28Q13263 835 aaKnown RBP22.6■■□□□ 1.21
NEDD1-212ENST00000557478 WWC1Q8IX03 1113 aa22.6■■□□□ 1.21
NEDD1-212ENST00000557478 PSMD1Q99460 953 aa22.6■■□□□ 1.21
NEDD1-212ENST00000557478 DDX58O95786 925 aaKnown RBP22.59■■□□□ 1.21
NEDD1-212ENST00000557478 TRMT112Q9UI30 125 aaKnown RBP22.59■■□□□ 1.21
NEDD1-212ENST00000557478 ARFGEF2Q9Y6D5 1785 aa22.58■■□□□ 1.21
NEDD1-212ENST00000557478 SBF1O95248 1867 aa22.58■■□□□ 1.2
NEDD1-212ENST00000557478 CCDC184Q52MB2 194 aa22.57■■□□□ 1.2
NEDD1-212ENST00000557478 TMC4Q7Z404 712 aa22.57■■□□□ 1.2
NEDD1-212ENST00000557478 WDR63Q8IWG1 891 aa22.57■■□□□ 1.2
NEDD1-212ENST00000557478 VPS33BQ9H267 617 aa22.57■■□□□ 1.2
NEDD1-212ENST00000557478 RRAGCQ9HB90 399 aa22.57■■□□□ 1.2
NEDD1-212ENST00000557478 BBOX1O75936 387 aa22.56■■□□□ 1.2
NEDD1-212ENST00000557478 PRELPP51888 382 aa22.56■■□□□ 1.2
NEDD1-212ENST00000557478 RIC3Q7Z5B4 369 aa22.56■■□□□ 1.2
NEDD1-212ENST00000557478 STK31Q9BXU1 1019 aa22.56■■□□□ 1.2
NEDD1-212ENST00000557478 FER1L6Q2WGJ9 1857 aa22.56■■□□□ 1.2
NEDD1-212ENST00000557478 SLX4Q8IY92 1834 aa22.55■■□□□ 1.2
NEDD1-212ENST00000557478 APLP1P51693 650 aa22.55■■□□□ 1.2
NEDD1-212ENST00000557478 SMC1BQ8NDV3 1235 aa22.55■■□□□ 1.2
NEDD1-212ENST00000557478 ISCA1Q9BUE6 129 aa22.55■■□□□ 1.2
NEDD1-212ENST00000557478 TNRC6CQ9HCJ0 1690 aaKnown RBP22.55■■□□□ 1.2
NEDD1-212ENST00000557478 IQCA1LA6NCM1 817 aa22.54■■□□□ 1.2
NEDD1-212ENST00000557478 PPEF1O14829 653 aaPredicted RBP22.54■■□□□ 1.2
NEDD1-212ENST00000557478 DDX46Q7L014 1031 aaKnown RBP22.54■■□□□ 1.2
NEDD1-212ENST00000557478 JDP2Q8WYK2 163 aa22.54■■□□□ 1.2
NEDD1-212ENST00000557478 C8orf58Q8NAV2 365 aa22.53■■□□□ 1.2
NEDD1-212ENST00000557478 SUPT20HQ8NEM7 779 aa22.53■■□□□ 1.2
NEDD1-212ENST00000557478 ELL2O00472 640 aaPredicted RBP22.52■■□□□ 1.2
NEDD1-212ENST00000557478 SYNE4Q8N205 404 aa22.52■■□□□ 1.2
NEDD1-212ENST00000557478 ATP6V0A2Q9Y487 856 aa22.52■■□□□ 1.2
NEDD1-212ENST00000557478 IARSP41252 1262 aaKnown RBP22.51■■□□□ 1.19
NEDD1-212ENST00000557478 CCDC191Q8NCU4 936 aa22.51■■□□□ 1.19
NEDD1-212ENST00000557478 CEP350Q5VT06 3117 aa22.51■■□□□ 1.19
NEDD1-212ENST00000557478 TWISTNBQ3B726 338 aaPredicted RBP22.5■■□□□ 1.19
NEDD1-212ENST00000557478 ZNF277Q9NRM2 450 aaPredicted RBP22.5■■□□□ 1.19
NEDD1-212ENST00000557478 GRAPQ13588 217 aa22.49■■□□□ 1.19
NEDD1-212ENST00000557478 SP8Q8IXZ3 490 aa22.49■■□□□ 1.19
NEDD1-212ENST00000557478 ZBTB38Q8NAP3 1195 aaPredicted RBP22.49■■□□□ 1.19
NEDD1-212ENST00000557478 GRAPLQ8TC17 118 aaPredicted RBP22.49■■□□□ 1.19
NEDD1-212ENST00000557478 L3MBTL3Q96JM7 780 aaPredicted RBP22.49■■□□□ 1.19
NEDD1-212ENST00000557478 HCLS1P14317 486 aaPredicted RBP22.48■■□□□ 1.19
NEDD1-212ENST00000557478 SF3B3Q15393 1217 aaKnown RBP22.48■■□□□ 1.19
NEDD1-212ENST00000557478 MYH16Q9H6N6 1097 aa22.48■■□□□ 1.19
NEDD1-212ENST00000557478 TIAM2Q8IVF5 1701 aa22.48■■□□□ 1.19
NEDD1-212ENST00000557478 FZD9O00144 591 aa22.47■■□□□ 1.19
NEDD1-212ENST00000557478 NEXNQ0ZGT2 675 aa22.47■■□□□ 1.19
NEDD1-212ENST00000557478 TSR2Q969E8 191 aaKnown RBP22.47■■□□□ 1.19
NEDD1-212ENST00000557478 PHAXQ9H814 394 aaKnown RBP22.47■■□□□ 1.19
NEDD1-212ENST00000557478 ABCC4O15439 1325 aa22.47■■□□□ 1.19
NEDD1-212ENST00000557478 ANKRD36CQ5JPF3 1778 aa22.47■■□□□ 1.19
NEDD1-212ENST00000557478 ATP5J2-PTCD1G3V325 749 aa22.46■■□□□ 1.19
NEDD1-212ENST00000557478 EIF6P56537 245 aaKnown RBP22.46■■□□□ 1.19
NEDD1-212ENST00000557478 KSR2Q6VAB6 950 aa22.46■■□□□ 1.19
NEDD1-212ENST00000557478 C3orf67Q6ZVT6 689 aa22.46■■□□□ 1.19
NEDD1-212ENST00000557478 GPC2Q8N158 579 aa22.46■■□□□ 1.19
NEDD1-212ENST00000557478 FAM89AQ96GI7 184 aa22.46■■□□□ 1.19
NEDD1-212ENST00000557478 METTL22Q9BUU2 404 aaPredicted RBP22.46■■□□□ 1.19
NEDD1-212ENST00000557478 DICER1Q9UPY3 1922 aaKnown RBP22.46■■□□□ 1.19
NEDD1-212ENST00000557478 SNED1Q8TER0 1413 aa22.46■■□□□ 1.19
NEDD1-212ENST00000557478 WDR90Q96KV7 1748 aa22.45■■□□□ 1.19
NEDD1-212ENST00000557478 IRS4O14654 1257 aaPredicted RBP22.45■■□□□ 1.18
NEDD1-212ENST00000557478 TSPYL6Q8N831 410 aa22.45■■□□□ 1.18
NEDD1-212ENST00000557478 RTFDC1Q9BY42 306 aaPredicted RBP22.45■■□□□ 1.18
NEDD1-212ENST00000557478 CWC25Q9NXE8 425 aaPredicted RBP22.45■■□□□ 1.18
NEDD1-212ENST00000557478 DDNO94850 711 aaPredicted RBP22.44■■□□□ 1.18
NEDD1-212ENST00000557478 PCCAP05165 728 aaPredicted RBP22.44■■□□□ 1.18
NEDD1-212ENST00000557478 DPP8Q6V1X1 898 aaPredicted RBP22.44■■□□□ 1.18
NEDD1-212ENST00000557478 FAM9BQ8IZU0 186 aa22.44■■□□□ 1.18
NEDD1-212ENST00000557478 LARGE2Q8N3Y3 721 aa22.44■■□□□ 1.18
NEDD1-212ENST00000557478 OLFM4Q6UX06 510 aa22.43■■□□□ 1.18
NEDD1-212ENST00000557478 NIM1KQ8IY84 436 aa22.43■■□□□ 1.18
NEDD1-212ENST00000557478 MPNDQ8N594 471 aa22.43■■□□□ 1.18
NEDD1-212ENST00000557478 MYD88Q99836 296 aa22.43■■□□□ 1.18
NEDD1-212ENST00000557478 FANCIQ9NVI1 1328 aa22.42■■□□□ 1.18
NEDD1-212ENST00000557478 POTECB2RU33 542 aa22.42■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms