RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 GIGYF1O75420 1035 aaPredicted RBP19.32■□□□□ 0.68
SHMT2-231ENST00000557433 CPA1P15085 419 aa19.32■□□□□ 0.68
SHMT2-231ENST00000557433 TYRO3Q06418 890 aa19.32■□□□□ 0.68
SHMT2-231ENST00000557433 AMOTQ4VCS5 1084 aa19.32■□□□□ 0.68
SHMT2-231ENST00000557433 UTP14CQ5TAP6 766 aaKnown RBP19.32■□□□□ 0.68
SHMT2-231ENST00000557433 BLOC1S2Q6QNY1 142 aa19.32■□□□□ 0.68
SHMT2-231ENST00000557433 TTC6Q86TZ1 520 aa19.32■□□□□ 0.68
SHMT2-231ENST00000557433 TPCN1Q9ULQ1 816 aa19.32■□□□□ 0.68
SHMT2-231ENST00000557433 JCADQ9P266 1359 aa19.32■□□□□ 0.68
SHMT2-231ENST00000557433 SLC27A2O14975 620 aa19.31■□□□□ 0.68
SHMT2-231ENST00000557433 KRT32Q14532 448 aa19.31■□□□□ 0.68
SHMT2-231ENST00000557433 PLEKHO1Q53GL0 409 aaPredicted RBP19.31■□□□□ 0.68
SHMT2-231ENST00000557433 AACSQ86V21 672 aa19.31■□□□□ 0.68
SHMT2-231ENST00000557433 LARP6Q9BRS8 491 aaKnown RBP19.31■□□□□ 0.68
SHMT2-231ENST00000557433 KCNF1Q9H3M0 494 aa19.31■□□□□ 0.68
SHMT2-231ENST00000557433 PHRF1Q9P1Y6 1649 aaKnown RBP19.31■□□□□ 0.68
SHMT2-231ENST00000557433 GOLGA6L4A6NEF3 574 aa19.31■□□□□ 0.68
SHMT2-231ENST00000557433 BTBD11A6QL63 1104 aa19.31■□□□□ 0.68
SHMT2-231ENST00000557433 PLCB2Q00722 1185 aa19.31■□□□□ 0.68
SHMT2-231ENST00000557433 SYCP1Q15431 976 aa19.31■□□□□ 0.68
SHMT2-231ENST00000557433 ZNF710Q8N1W2 664 aa19.31■□□□□ 0.68
SHMT2-231ENST00000557433 LTV1Q96GA3 475 aaPredicted RBP19.31■□□□□ 0.68
SHMT2-231ENST00000557433 PRDM4Q9UKN5 801 aa19.31■□□□□ 0.68
SHMT2-231ENST00000557433 MRVI1Q9Y6F6 885 aa19.31■□□□□ 0.68
SHMT2-231ENST00000557433 LMTK3Q96Q04 1460 aa19.31■□□□□ 0.68
SHMT2-231ENST00000557433 AP5Z1O43299 807 aa19.3■□□□□ 0.68
SHMT2-231ENST00000557433 RPS6KB1P23443 525 aa19.3■□□□□ 0.68
SHMT2-231ENST00000557433 G3BP1Q13283 466 aaKnown RBP eCLIP19.3■□□□□ 0.682e-7■■■□□ 18
SHMT2-231ENST00000557433 LINS1Q8NG48 757 aa19.3■□□□□ 0.68
SHMT2-231ENST00000557433 TNMDQ9H2S6 317 aa19.3■□□□□ 0.68
SHMT2-231ENST00000557433 HEG1Q9ULI3 1381 aa19.3■□□□□ 0.68
SHMT2-231ENST00000557433 MAP3K2Q9Y2U5 619 aa19.29■□□□□ 0.68
SHMT2-231ENST00000557433 LTN1O94822 1766 aa19.29■□□□□ 0.68
SHMT2-231ENST00000557433 RFX7Q2KHR2 1363 aa19.29■□□□□ 0.68
SHMT2-231ENST00000557433 MED23Q9ULK4 1368 aa19.29■□□□□ 0.68
SHMT2-231ENST00000557433 NFAT5O94916 1531 aa19.29■□□□□ 0.68
SHMT2-231ENST00000557433 CTIFO43310 598 aaKnown RBP19.29■□□□□ 0.68
SHMT2-231ENST00000557433 DDX58O95786 925 aaKnown RBP19.29■□□□□ 0.68
SHMT2-231ENST00000557433 NMIQ13287 307 aaPredicted RBP19.29■□□□□ 0.68
SHMT2-231ENST00000557433 CLSTN2Q9H4D0 955 aa19.29■□□□□ 0.68
SHMT2-231ENST00000557433 KCNH5Q8NCM2 988 aa19.28■□□□□ 0.68
SHMT2-231ENST00000557433 TDRD7Q8NHU6 1098 aaKnown RBP19.28■□□□□ 0.68
SHMT2-231ENST00000557433 SPATA32Q96LK8 384 aa19.28■□□□□ 0.68
SHMT2-231ENST00000557433 LGR6Q9HBX8 967 aa19.28■□□□□ 0.68
SHMT2-231ENST00000557433 PYCARDQ9ULZ3 195 aa19.28■□□□□ 0.68
SHMT2-231ENST00000557433 MRC1P22897 1456 aa19.28■□□□□ 0.68
SHMT2-231ENST00000557433 GRM8O00222 908 aa19.27■□□□□ 0.68
SHMT2-231ENST00000557433 CDC37L1Q7L3B6 337 aa19.27■□□□□ 0.68
SHMT2-231ENST00000557433 MPNDQ8N594 471 aa19.27■□□□□ 0.68
SHMT2-231ENST00000557433 NECAB1Q8N987 351 aa19.27■□□□□ 0.68
SHMT2-231ENST00000557433 BCL2L12Q9HB09 334 aa19.27■□□□□ 0.68
SHMT2-231ENST00000557433 CDC25BP30305 580 aa19.27■□□□□ 0.67
SHMT2-231ENST00000557433 THEMISQ8N1K5 641 aaPredicted RBP19.27■□□□□ 0.67
SHMT2-231ENST00000557433 C17orf53Q8N3J3 647 aaPredicted RBP19.27■□□□□ 0.67
SHMT2-231ENST00000557433 ANKRD7Q92527 254 aa19.27■□□□□ 0.67
SHMT2-231ENST00000557433 NPHP4O75161 1426 aaPredicted RBP19.27■□□□□ 0.67
SHMT2-231ENST00000557433 LIG1P18858 919 aa19.26■□□□□ 0.67
SHMT2-231ENST00000557433 ZNF530Q6P9A1 599 aaPredicted RBP19.26■□□□□ 0.67
SHMT2-231ENST00000557433 ZSCAN16Q9H4T2 348 aaPredicted RBP19.26■□□□□ 0.67
SHMT2-231ENST00000557433 NBPF6Q5VWK0 638 aa19.25■□□□□ 0.67
SHMT2-231ENST00000557433 USPL1Q5W0Q7 1092 aa19.25■□□□□ 0.67
SHMT2-231ENST00000557433 PLA2G4DQ86XP0 818 aa19.25■□□□□ 0.67
SHMT2-231ENST00000557433 USHBP1Q8N6Y0 703 aa19.25■□□□□ 0.67
SHMT2-231ENST00000557433 LEO1Q8WVC0 666 aaPredicted RBP19.25■□□□□ 0.67
SHMT2-231ENST00000557433 NBPF4Q96M43 638 aa19.25■□□□□ 0.67
SHMT2-231ENST00000557433 DACT1Q9NYF0 836 aa19.25■□□□□ 0.67
SHMT2-231ENST00000557433 RNMTO43148 476 aaKnown RBP19.25■□□□□ 0.67
SHMT2-231ENST00000557433 PDCL2Q8N4E4 241 aa19.25■□□□□ 0.67
SHMT2-231ENST00000557433 SPC24Q8NBT2 197 aa19.25■□□□□ 0.67
SHMT2-231ENST00000557433 FAM227BQ96M60 508 aa19.25■□□□□ 0.67
SHMT2-231ENST00000557433 FSD1Q9BTV5 496 aa19.25■□□□□ 0.67
SHMT2-231ENST00000557433 GTPBP4Q9BZE4 634 aaKnown RBP19.25■□□□□ 0.67
SHMT2-231ENST00000557433 CBX8Q9HC52 389 aa19.25■□□□□ 0.67
SHMT2-231ENST00000557433 RIOK3O14730 519 aaKnown RBP19.24■□□□□ 0.67
SHMT2-231ENST00000557433 SASH1O94885 1247 aa19.24■□□□□ 0.67
SHMT2-231ENST00000557433 ZNF75DP51815 510 aa19.24■□□□□ 0.67
SHMT2-231ENST00000557433 DMTNQ08495 405 aa19.24■□□□□ 0.67
SHMT2-231ENST00000557433 C1orf141Q5JVX7 400 aa19.24■□□□□ 0.67
SHMT2-231ENST00000557433 NUTM2GQ5VZR2 741 aa19.24■□□□□ 0.67
SHMT2-231ENST00000557433 EAF2Q96CJ1 260 aaPredicted RBP19.24■□□□□ 0.67
SHMT2-231ENST00000557433 CFAP45Q9UL16 551 aa19.24■□□□□ 0.67
SHMT2-231ENST00000557433 CTAGE5O15320 804 aa19.23■□□□□ 0.67
SHMT2-231ENST00000557433 KCNQ3O43525 872 aa19.23■□□□□ 0.67
SHMT2-231ENST00000557433 NEMFO60524 1076 aa19.23■□□□□ 0.67
SHMT2-231ENST00000557433 TOB2Q14106 344 aaPredicted RBP19.23■□□□□ 0.67
SHMT2-231ENST00000557433 TPRNQ4KMQ1 711 aa19.23■□□□□ 0.67
SHMT2-231ENST00000557433 ANO6Q4KMQ2 910 aa19.23■□□□□ 0.67
SHMT2-231ENST00000557433 TICAM2Q86XR7 235 aa19.23■□□□□ 0.67
SHMT2-231ENST00000557433 PA2G4Q9UQ80 394 aaKnown RBP19.23■□□□□ 0.67
SHMT2-231ENST00000557433 PAXBP1Q9Y5B6 917 aa19.23■□□□□ 0.67
SHMT2-231ENST00000557433 SMTNL1A8MU46 457 aa19.23■□□□□ 0.67
SHMT2-231ENST00000557433 PTGS1P23219 599 aa19.23■□□□□ 0.67
SHMT2-231ENST00000557433 FEZ1Q99689 392 aa19.23■□□□□ 0.67
SHMT2-231ENST00000557433 LUZP1Q86V48 1076 aa19.22■□□□□ 0.67
SHMT2-231ENST00000557433 DDX21Q9NR30 783 aaKnown RBP eCLIP19.22■□□□□ 0.67
SHMT2-231ENST00000557433 PHF8Q9UPP1 1060 aa19.22■□□□□ 0.67
SHMT2-231ENST00000557433 A0A0D9SFI3 127 aa19.21■□□□□ 0.67
SHMT2-231ENST00000557433 PPP4R3BQ5MIZ7 849 aa19.21■□□□□ 0.67
SHMT2-231ENST00000557433 ATL3Q6DD88 541 aa19.21■□□□□ 0.67
SHMT2-231ENST00000557433 LARP1Q6PKG0 1096 aaKnown RBP19.21■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 406.7 ms