RNA–Protein interactions for RNA: ENST00000556956.1

SLIRP-208, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 2

Gene SLIRP, Length 450 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-208ENST00000556956 SLFNL1Q499Z3 407 aa4.5□□□□□ -1.69
SLIRP-208ENST00000556956 CEP126Q9P2H0 1117 aa4.5□□□□□ -1.69
SLIRP-208ENST00000556956 JUNBP17275 347 aaPredicted RBP4.49□□□□□ -1.69
SLIRP-208ENST00000556956 SFSWAPQ12872 951 aaKnown RBP4.49□□□□□ -1.69
SLIRP-208ENST00000556956 SEMA3FQ13275 785 aa4.49□□□□□ -1.69
SLIRP-208ENST00000556956 TLR1Q15399 786 aa4.49□□□□□ -1.69
SLIRP-208ENST00000556956 IGF2-ASQ6U949 168 aa4.49□□□□□ -1.69
SLIRP-208ENST00000556956 GDPD2Q9HCC8 539 aa4.49□□□□□ -1.69
SLIRP-208ENST00000556956 TBC1D2BQ9UPU7 963 aa4.49□□□□□ -1.69
SLIRP-208ENST00000556956 GJA3Q9Y6H8 435 aa4.49□□□□□ -1.69
SLIRP-208ENST00000556956 ABL2P42684 1182 aa4.48□□□□□ -1.69
SLIRP-208ENST00000556956 NFIAQ12857 509 aa4.48□□□□□ -1.69
SLIRP-208ENST00000556956 KRTAP19-4Q3LI73 84 aa4.48□□□□□ -1.69
SLIRP-208ENST00000556956 AKTIPQ9H8T0 292 aa4.48□□□□□ -1.69
SLIRP-208ENST00000556956 STOML1Q9UBI4 398 aa4.48□□□□□ -1.69
SLIRP-208ENST00000556956 PSPNO60542 156 aa4.47□□□□□ -1.69
SLIRP-208ENST00000556956 MCM6Q14566 821 aa4.47□□□□□ -1.69
SLIRP-208ENST00000556956 MAP7D1Q3KQU3 841 aa4.47□□□□□ -1.69
SLIRP-208ENST00000556956 ESCO1Q5FWF5 840 aa4.47□□□□□ -1.69
SLIRP-208ENST00000556956 NFXL1Q6ZNB6 911 aa4.47□□□□□ -1.69
SLIRP-208ENST00000556956 ETNK1Q9HBU6 452 aa4.47□□□□□ -1.69
SLIRP-208ENST00000556956 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP4.47□□□□□ -1.69
SLIRP-208ENST00000556956 MYO15BQ96JP2 1530 aa4.46□□□□□ -1.69
SLIRP-208ENST00000556956 LZTS3O60299 673 aaPredicted RBP4.46□□□□□ -1.7
SLIRP-208ENST00000556956 UBTFP17480 764 aaKnown RBP4.46□□□□□ -1.7
SLIRP-208ENST00000556956 HOXA10P31260 410 aaPredicted RBP4.46□□□□□ -1.7
SLIRP-208ENST00000556956 SPEM2Q0P670 501 aa4.46□□□□□ -1.7
SLIRP-208ENST00000556956 CILP2Q8IUL8 1156 aa4.46□□□□□ -1.7
SLIRP-208ENST00000556956 DTWD1Q8N5C7 304 aa4.46□□□□□ -1.7
SLIRP-208ENST00000556956 NAGPAQ9UK23 515 aa4.46□□□□□ -1.7
SLIRP-208ENST00000556956 DEAF1O75398 565 aaPredicted RBP4.45□□□□□ -1.7
SLIRP-208ENST00000556956 VAC14Q08AM6 782 aa4.45□□□□□ -1.7
SLIRP-208ENST00000556956 TBC1D8BQ0IIM8 1120 aa4.45□□□□□ -1.7
SLIRP-208ENST00000556956 IRF5Q13568 498 aa4.45□□□□□ -1.7
SLIRP-208ENST00000556956 MSL1Q68DK7 614 aa4.45□□□□□ -1.7
SLIRP-208ENST00000556956 PSAPL1Q6NUJ1 521 aa4.45□□□□□ -1.7
SLIRP-208ENST00000556956 ZNF295-AS1Q8N0V1 137 aa4.45□□□□□ -1.7
SLIRP-208ENST00000556956 CSRNP1Q96S65 589 aa4.45□□□□□ -1.7
SLIRP-208ENST00000556956 NIFKQ9BYG3 293 aaKnown RBP4.45□□□□□ -1.7
SLIRP-208ENST00000556956 SLC6A14Q9UN76 642 aa4.45□□□□□ -1.7
SLIRP-208ENST00000556956 DOLKQ9UPQ8 538 aa4.45□□□□□ -1.7
SLIRP-208ENST00000556956 F8W735 103 aaPredicted RBP4.44□□□□□ -1.7
SLIRP-208ENST00000556956 GPR37L1O60883 481 aa4.44□□□□□ -1.7
SLIRP-208ENST00000556956 PAPLNO95428 1278 aa4.44□□□□□ -1.7
SLIRP-208ENST00000556956 PKN1Q16512 942 aa4.44□□□□□ -1.7
SLIRP-208ENST00000556956 LCNL1Q6ZST4 164 aa4.44□□□□□ -1.7
SLIRP-208ENST00000556956 CDCA7Q9BWT1 371 aaPredicted RBP4.44□□□□□ -1.7
SLIRP-208ENST00000556956 COG6Q9Y2V7 657 aa4.44□□□□□ -1.7
SLIRP-208ENST00000556956 DLL1O00548 723 aa4.43□□□□□ -1.7
SLIRP-208ENST00000556956 TATP17735 454 aaPredicted RBP4.43□□□□□ -1.7
SLIRP-208ENST00000556956 NBPF1Q3BBV0 1214 aa4.43□□□□□ -1.7
SLIRP-208ENST00000556956 Q6ZS46 218 aa4.43□□□□□ -1.7
SLIRP-208ENST00000556956 PHTF2Q8N3S3 785 aa4.43□□□□□ -1.7
SLIRP-208ENST00000556956 UBL7Q96S82 380 aaPredicted RBP4.43□□□□□ -1.7
SLIRP-208ENST00000556956 FARP2O94887 1054 aaPredicted RBP4.42□□□□□ -1.7
SLIRP-208ENST00000556956 CARMIL2Q6F5E8 1435 aa4.42□□□□□ -1.7
SLIRP-208ENST00000556956 TTLL10Q6ZVT0 673 aa4.42□□□□□ -1.7
SLIRP-208ENST00000556956 TRIM42Q8IWZ5 723 aa4.42□□□□□ -1.7
SLIRP-208ENST00000556956 AGGF1Q8N302 714 aaeCLIP4.42□□□□□ -1.7
SLIRP-208ENST00000556956 NFATC2IPQ8NCF5 419 aa4.42□□□□□ -1.7
SLIRP-208ENST00000556956 CCDC85AQ96PX6 553 aaPredicted RBP4.42□□□□□ -1.7
SLIRP-208ENST00000556956 UBE2OQ9C0C9 1292 aaKnown RBP4.42□□□□□ -1.7
SLIRP-208ENST00000556956 C7orf69Q9H7B7 122 aa4.42□□□□□ -1.7
SLIRP-208ENST00000556956 ZDHHC3Q9NYG2 299 aa4.42□□□□□ -1.7
SLIRP-208ENST00000556956 CHIC2Q9UKJ5 165 aa4.42□□□□□ -1.7
SLIRP-208ENST00000556956 ANGEL1Q9UNK9 670 aaKnown RBP4.42□□□□□ -1.7
SLIRP-208ENST00000556956 ZCCHC6Q5VYS8 1495 aaKnown RBP4.42□□□□□ -1.7
SLIRP-208ENST00000556956 LOC105371045A0A1W2PR82 267 aa4.41□□□□□ -1.7
SLIRP-208ENST00000556956 HMX2A2RU54 273 aa4.41□□□□□ -1.7
SLIRP-208ENST00000556956 RGS9O75916 674 aaPredicted RBP4.41□□□□□ -1.7
SLIRP-208ENST00000556956 GLB1P16278 677 aa4.41□□□□□ -1.7
SLIRP-208ENST00000556956 GRIK5Q16478 980 aa4.41□□□□□ -1.7
SLIRP-208ENST00000556956 EML3Q32P44 896 aa4.41□□□□□ -1.7
SLIRP-208ENST00000556956 OXLD1Q5BKU9 147 aa4.41□□□□□ -1.7
SLIRP-208ENST00000556956 RNF43Q68DV7 783 aa4.41□□□□□ -1.7
SLIRP-208ENST00000556956 LRRC69Q6ZNQ3 347 aa4.41□□□□□ -1.7
SLIRP-208ENST00000556956 BICDL1Q6ZP65 573 aa4.41□□□□□ -1.7
SLIRP-208ENST00000556956 C1QL4Q86Z23 238 aa4.41□□□□□ -1.7
SLIRP-208ENST00000556956 ARMC10Q8N2F6 343 aa4.41□□□□□ -1.7
SLIRP-208ENST00000556956 TMEM130Q8N3G9 435 aa4.41□□□□□ -1.7
SLIRP-208ENST00000556956 PLPP7Q8NBV4 271 aa4.41□□□□□ -1.7
SLIRP-208ENST00000556956 SHKBP1Q8TBC3 707 aa4.41□□□□□ -1.7
SLIRP-208ENST00000556956 DBNDD2Q9BQY9 259 aa4.41□□□□□ -1.7
SLIRP-208ENST00000556956 IGFLR1Q9H665 355 aa4.41□□□□□ -1.7
SLIRP-208ENST00000556956 CCDC39Q9UFE4 941 aa4.41□□□□□ -1.7
SLIRP-208ENST00000556956 PLAURQ03405 335 aa4.4□□□□□ -1.71
SLIRP-208ENST00000556956 NEUROD1Q13562 356 aa4.4□□□□□ -1.71
SLIRP-208ENST00000556956 KSR1Q8IVT5 923 aa4.4□□□□□ -1.71
SLIRP-208ENST00000556956 ALG2Q9H553 416 aa4.4□□□□□ -1.71
SLIRP-208ENST00000556956 LMCD1Q9NZU5 365 aa4.4□□□□□ -1.71
SLIRP-208ENST00000556956 NOD1Q9Y239 953 aa4.4□□□□□ -1.71
SLIRP-208ENST00000556956 BACH1O14867 736 aa4.39□□□□□ -1.71
SLIRP-208ENST00000556956 DHX15O43143 795 aaKnown RBP4.39□□□□□ -1.71
SLIRP-208ENST00000556956 SKIP12755 728 aa4.39□□□□□ -1.71
SLIRP-208ENST00000556956 CFPP27918 469 aa4.39□□□□□ -1.71
SLIRP-208ENST00000556956 TP53INP2Q8IXH6 220 aa4.39□□□□□ -1.71
SLIRP-208ENST00000556956 BHMTQ93088 406 aa4.39□□□□□ -1.71
SLIRP-208ENST00000556956 USP3Q9Y6I4 520 aa4.39□□□□□ -1.71
SLIRP-208ENST00000556956 INHAP05111 366 aa4.38□□□□□ -1.71
SLIRP-208ENST00000556956 TXLNAP40222 546 aa4.38□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 114.5 ms