RNA–Protein interactions for RNA: ENST00000556648.1

TMEM260-211, Transcript of transmembrane protein 260, humanhuman

TSL 2

Gene TMEM260, Length 2,013 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-211ENST00000556648 DIAPH3Q9NSV4 1193 aa12.29□□□□□ -0.44
TMEM260-211ENST00000556648 TMOD3Q9NYL9 352 aa12.29□□□□□ -0.44
TMEM260-211ENST00000556648 BRPF3Q9ULD4 1205 aa12.29□□□□□ -0.44
TMEM260-211ENST00000556648 COL15A1P39059 1388 aa12.29□□□□□ -0.44
TMEM260-211ENST00000556648 CYP2E1P05181 493 aaPredicted RBP12.28□□□□□ -0.44
TMEM260-211ENST00000556648 FOXO4P98177 505 aa12.28□□□□□ -0.44
TMEM260-211ENST00000556648 RASEFQ8IZ41 740 aa12.28□□□□□ -0.44
TMEM260-211ENST00000556648 PIGBQ92521 554 aa12.28□□□□□ -0.44
TMEM260-211ENST00000556648 COPRSQ9NQ92 184 aa12.28□□□□□ -0.44
TMEM260-211ENST00000556648 SNX14Q9Y5W7 946 aa12.28□□□□□ -0.44
TMEM260-211ENST00000556648 H7C1W4 665 aa12.28□□□□□ -0.44
TMEM260-211ENST00000556648 LMBR1LQ6UX01 489 aa12.28□□□□□ -0.44
TMEM260-211ENST00000556648 DNAJC10Q8IXB1 793 aa12.28□□□□□ -0.44
TMEM260-211ENST00000556648 EDC3Q96F86 508 aaKnown RBP12.28□□□□□ -0.44
TMEM260-211ENST00000556648 FAM227BQ96M60 508 aa12.28□□□□□ -0.44
TMEM260-211ENST00000556648 GBP4Q96PP9 640 aa12.28□□□□□ -0.44
TMEM260-211ENST00000556648 ZDHHC9Q9Y397 364 aa12.28□□□□□ -0.44
TMEM260-211ENST00000556648 WNK3Q9BYP7 1800 aa12.28□□□□□ -0.44
TMEM260-211ENST00000556648 COL22A1Q8NFW1 1626 aaPredicted RBP12.28□□□□□ -0.44
TMEM260-211ENST00000556648 PLCH1Q4KWH8 1693 aa12.27□□□□□ -0.44
TMEM260-211ENST00000556648 BAG4O95429 457 aaKnown RBP12.27□□□□□ -0.44
TMEM260-211ENST00000556648 EVI5LQ96CN4 794 aa12.27□□□□□ -0.44
TMEM260-211ENST00000556648 CHAMP1Q96JM3 812 aa12.27□□□□□ -0.44
TMEM260-211ENST00000556648 ARXQ96QS3 562 aa12.27□□□□□ -0.44
TMEM260-211ENST00000556648 DBNLQ9UJU6 430 aaKnown RBP12.27□□□□□ -0.44
TMEM260-211ENST00000556648 CHMP3Q9Y3E7 222 aa12.27□□□□□ -0.44
TMEM260-211ENST00000556648 ZNF330Q9Y3S2 320 aaPredicted RBP12.27□□□□□ -0.44
TMEM260-211ENST00000556648 NDUFB9Q9Y6M9 179 aa12.27□□□□□ -0.44
TMEM260-211ENST00000556648 AHDC1Q5TGY3 1603 aaPredicted RBP12.27□□□□□ -0.44
TMEM260-211ENST00000556648 CPA1P15085 419 aa12.27□□□□□ -0.45
TMEM260-211ENST00000556648 NMIQ13287 307 aaPredicted RBP12.27□□□□□ -0.45
TMEM260-211ENST00000556648 TNNI3KQ59H18 835 aa12.27□□□□□ -0.45
TMEM260-211ENST00000556648 ATG3Q9NT62 314 aa12.27□□□□□ -0.45
TMEM260-211ENST00000556648 CWC25Q9NXE8 425 aaPredicted RBP12.27□□□□□ -0.45
TMEM260-211ENST00000556648 FPGT-TNNI3KV9GXZ4 949 aa12.27□□□□□ -0.45
TMEM260-211ENST00000556648 A0A0D9SFI3 127 aa12.25□□□□□ -0.45
TMEM260-211ENST00000556648 CUL4AQ13619 759 aa12.25□□□□□ -0.45
TMEM260-211ENST00000556648 FOXD4L5Q5VV16 416 aaPredicted RBP12.25□□□□□ -0.45
TMEM260-211ENST00000556648 KIAA1211Q6ZU35 1233 aa12.25□□□□□ -0.45
TMEM260-211ENST00000556648 IL27Q8NEV9 243 aa12.25□□□□□ -0.45
TMEM260-211ENST00000556648 FOXD4L4Q8WXT5 416 aaPredicted RBP12.25□□□□□ -0.45
TMEM260-211ENST00000556648 DBNDD2Q9BQY9 259 aa12.25□□□□□ -0.45
TMEM260-211ENST00000556648 LARP6Q9BRS8 491 aaKnown RBP12.25□□□□□ -0.45
TMEM260-211ENST00000556648 CCDC9Q9Y3X0 531 aaKnown RBP12.25□□□□□ -0.45
TMEM260-211ENST00000556648 EPB41L2O43491 1005 aaKnown RBP12.25□□□□□ -0.45
TMEM260-211ENST00000556648 CHGBP05060 677 aa12.25□□□□□ -0.45
TMEM260-211ENST00000556648 CLEC17AQ6ZS10 378 aa12.25□□□□□ -0.45
TMEM260-211ENST00000556648 CWC22Q9HCG8 908 aaKnown RBP12.25□□□□□ -0.45
TMEM260-211ENST00000556648 NUCB2P80303 420 aa12.24□□□□□ -0.45
TMEM260-211ENST00000556648 ADCK5Q3MIX3 580 aa12.24□□□□□ -0.45
TMEM260-211ENST00000556648 PRPF40BQ6NWY9 871 aaKnown RBP12.24□□□□□ -0.45
TMEM260-211ENST00000556648 ATG9AQ7Z3C6 839 aa12.24□□□□□ -0.45
TMEM260-211ENST00000556648 RUFY2Q8WXA3 655 aa12.24□□□□□ -0.45
TMEM260-211ENST00000556648 ZNF594Q96JF6 807 aaPredicted RBP12.24□□□□□ -0.45
TMEM260-211ENST00000556648 TTC14Q96N46 770 aa12.24□□□□□ -0.45
TMEM260-211ENST00000556648 SLC4A9Q96Q91 983 aa12.24□□□□□ -0.45
TMEM260-211ENST00000556648 FSD1Q9BTV5 496 aa12.24□□□□□ -0.45
TMEM260-211ENST00000556648 DOT1LQ8TEK3 1739 aa12.24□□□□□ -0.45
TMEM260-211ENST00000556648 MCM2P49736 904 aa12.23□□□□□ -0.45
TMEM260-211ENST00000556648 COL9A3Q14050 684 aaPredicted RBP12.23□□□□□ -0.45
TMEM260-211ENST00000556648 MCTP1Q6DN14 999 aa12.23□□□□□ -0.45
TMEM260-211ENST00000556648 ISCA1Q9BUE6 129 aa12.23□□□□□ -0.45
TMEM260-211ENST00000556648 CCDC171Q6TFL3 1326 aa12.23□□□□□ -0.45
TMEM260-211ENST00000556648 FSD2A1L4K1 749 aa12.23□□□□□ -0.45
TMEM260-211ENST00000556648 AK2P54819 239 aa12.23□□□□□ -0.45
TMEM260-211ENST00000556648 LRRC24Q50LG9 513 aa12.23□□□□□ -0.45
TMEM260-211ENST00000556648 CCDC191Q8NCU4 936 aa12.23□□□□□ -0.45
TMEM260-211ENST00000556648 MED23Q9ULK4 1368 aa12.23□□□□□ -0.45
TMEM260-211ENST00000556648 BCL9O00512 1426 aa12.22□□□□□ -0.45
TMEM260-211ENST00000556648 LRP6O75581 1613 aa12.22□□□□□ -0.45
TMEM260-211ENST00000556648 LTBP4Q8N2S1 1624 aa12.22□□□□□ -0.45
TMEM260-211ENST00000556648 RUFY3Q7L099 469 aa12.22□□□□□ -0.45
TMEM260-211ENST00000556648 ZNF589Q86UQ0 364 aaPredicted RBP12.22□□□□□ -0.45
TMEM260-211ENST00000556648 RBM8AQ9Y5S9 174 aaKnown RBP12.22□□□□□ -0.45
TMEM260-211ENST00000556648 NRAPQ86VF7 1730 aa12.22□□□□□ -0.45
TMEM260-211ENST00000556648 DTNBO60941 627 aa12.21□□□□□ -0.45
TMEM260-211ENST00000556648 LARGE1O95461 756 aa12.21□□□□□ -0.45
TMEM260-211ENST00000556648 ATP5JP18859 108 aa12.21□□□□□ -0.45
TMEM260-211ENST00000556648 CASTP20810 708 aaKnown RBP12.21□□□□□ -0.45
TMEM260-211ENST00000556648 JAKMIP1Q96N16 626 aaKnown RBP12.21□□□□□ -0.45
TMEM260-211ENST00000556648 DNAJC2Q99543 621 aaKnown RBP12.21□□□□□ -0.45
TMEM260-211ENST00000556648 PUS3Q9BZE2 481 aaKnown RBP12.21□□□□□ -0.45
TMEM260-211ENST00000556648 TAF6LQ9Y6J9 622 aa12.21□□□□□ -0.45
TMEM260-211ENST00000556648 PHLPP1O60346 1717 aa12.21□□□□□ -0.45
TMEM260-211ENST00000556648 ADAMTS2O95450 1211 aa12.21□□□□□ -0.46
TMEM260-211ENST00000556648 TCIRG1Q13488 830 aa12.21□□□□□ -0.46
TMEM260-211ENST00000556648 NECTIN1Q15223 517 aa12.21□□□□□ -0.46
TMEM260-211ENST00000556648 HLFQ16534 295 aa12.21□□□□□ -0.46
TMEM260-211ENST00000556648 SYNE4Q8N205 404 aa12.21□□□□□ -0.46
TMEM260-211ENST00000556648 KCNB2Q92953 911 aa12.21□□□□□ -0.46
TMEM260-211ENST00000556648 SYTL4Q96C24 671 aaPredicted RBP12.21□□□□□ -0.46
TMEM260-211ENST00000556648 CCDC85AQ96PX6 553 aaPredicted RBP12.21□□□□□ -0.46
TMEM260-211ENST00000556648 SNRKQ9NRH2 765 aa12.21□□□□□ -0.46
TMEM260-211ENST00000556648 ZNF609O15014 1411 aa12.21□□□□□ -0.46
TMEM260-211ENST00000556648 CREB3L3Q68CJ9 461 aa12.2□□□□□ -0.46
TMEM260-211ENST00000556648 RPAP1Q9BWH6 1393 aaPredicted RBP12.2□□□□□ -0.46
TMEM260-211ENST00000556648 GOLGA6L3A6NEY3 463 aa12.2□□□□□ -0.46
TMEM260-211ENST00000556648 HIP1O00291 1037 aa12.2□□□□□ -0.46
TMEM260-211ENST00000556648 SLFNL1Q499Z3 407 aa12.2□□□□□ -0.46
TMEM260-211ENST00000556648 KIF6Q6ZMV9 814 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms