RNA–Protein interactions for RNA: ENST00000556433.5

ACTN1-220, Transcript of actinin alpha 1, humanhuman

TSL 3

Gene ACTN1, Length 1,259 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-220ENST00000556433 COPS6Q7L5N1 327 aa29.53■■■□□ 2.32
ACTN1-220ENST00000556433 SYNE4Q8N205 404 aa29.53■■■□□ 2.32
ACTN1-220ENST00000556433 WDR90Q96KV7 1748 aa29.52■■■□□ 2.32
ACTN1-220ENST00000556433 HOXA10P31260 410 aaPredicted RBP29.52■■■□□ 2.32
ACTN1-220ENST00000556433 AIMP1Q12904 312 aaKnown RBP29.52■■■□□ 2.32
ACTN1-220ENST00000556433 XAGE3Q8WTP9 111 aa29.51■■■□□ 2.31
ACTN1-220ENST00000556433 UTP14AQ9BVJ6 771 aaKnown RBP29.51■■■□□ 2.31
ACTN1-220ENST00000556433 KLRG1Q96E93 195 aa29.5■■■□□ 2.31
ACTN1-220ENST00000556433 RBM17Q96I25 401 aaKnown RBP29.5■■■□□ 2.31
ACTN1-220ENST00000556433 DDX21Q9NR30 783 aaKnown RBP eCLIP29.5■■■□□ 2.31
ACTN1-220ENST00000556433 RIC1Q4ADV7 1423 aa29.49■■■□□ 2.31
ACTN1-220ENST00000556433 IARSP41252 1262 aaKnown RBP29.49■■■□□ 2.31
ACTN1-220ENST00000556433 CC2D2BQ6DHV5 1058 aa29.49■■■□□ 2.31
ACTN1-220ENST00000556433 NLRP3Q96P20 1036 aa29.49■■■□□ 2.31
ACTN1-220ENST00000556433 HSP90AB3PQ58FF7 597 aa29.48■■■□□ 2.31
ACTN1-220ENST00000556433 C3orf67Q6ZVT6 689 aa29.48■■■□□ 2.31
ACTN1-220ENST00000556433 CRAMP1Q96RY5 1269 aa29.48■■■□□ 2.31
ACTN1-220ENST00000556433 SLC10A5Q5PT55 438 aa29.47■■■□□ 2.31
ACTN1-220ENST00000556433 PSMD1Q99460 953 aa29.47■■■□□ 2.31
ACTN1-220ENST00000556433 TCERG1O14776 1098 aaKnown RBP29.46■■■□□ 2.31
ACTN1-220ENST00000556433 IQCA1LA6NCM1 817 aa29.45■■■□□ 2.31
ACTN1-220ENST00000556433 CHADLQ6NUI6 762 aa29.45■■■□□ 2.31
ACTN1-220ENST00000556433 L3MBTL3Q96JM7 780 aaPredicted RBP29.45■■■□□ 2.31
ACTN1-220ENST00000556433 CFAP44Q96MT7 982 aa29.45■■■□□ 2.31
ACTN1-220ENST00000556433 CHPF2Q9P2E5 772 aa29.45■■■□□ 2.31
ACTN1-220ENST00000556433 ZNF541Q9H0D2 1346 aa29.45■■■□□ 2.3
ACTN1-220ENST00000556433 TCIRG1Q13488 830 aa29.44■■■□□ 2.3
ACTN1-220ENST00000556433 HDGFL1Q5TGJ6 251 aa29.44■■■□□ 2.3
ACTN1-220ENST00000556433 PPEF1O14829 653 aaPredicted RBP29.43■■■□□ 2.3
ACTN1-220ENST00000556433 POTEIP0CG38 1075 aa29.43■■■□□ 2.3
ACTN1-220ENST00000556433 POTEJP0CG39 1038 aa29.43■■■□□ 2.3
ACTN1-220ENST00000556433 GRIPAP1Q4V328 841 aa29.43■■■□□ 2.3
ACTN1-220ENST00000556433 NLRP10Q86W26 655 aa29.43■■■□□ 2.3
ACTN1-220ENST00000556433 FZD9O00144 591 aa29.42■■■□□ 2.3
ACTN1-220ENST00000556433 HOXB7P09629 217 aa29.42■■■□□ 2.3
ACTN1-220ENST00000556433 JDP2Q8WYK2 163 aa29.42■■■□□ 2.3
ACTN1-220ENST00000556433 TAF1DQ9H5J8 278 aaPredicted RBP29.42■■■□□ 2.3
ACTN1-220ENST00000556433 APAF1O14727 1248 aa29.41■■■□□ 2.3
ACTN1-220ENST00000556433 JMYQ8N9B5 988 aa29.41■■■□□ 2.3
ACTN1-220ENST00000556433 SNED1Q8TER0 1413 aa29.41■■■□□ 2.3
ACTN1-220ENST00000556433 RNF123Q5XPI4 1314 aa29.41■■■□□ 2.3
ACTN1-220ENST00000556433 DUSP27Q5VZP5 1158 aa29.4■■■□□ 2.3
ACTN1-220ENST00000556433 TMX4Q9H1E5 349 aaPredicted RBP29.4■■■□□ 2.3
ACTN1-220ENST00000556433 MBIPQ9NS73 344 aa29.4■■■□□ 2.3
ACTN1-220ENST00000556433 TRMT112Q9UI30 125 aaKnown RBP29.4■■■□□ 2.3
ACTN1-220ENST00000556433 HCLS1P14317 486 aaPredicted RBP29.39■■■□□ 2.3
ACTN1-220ENST00000556433 SLC51AQ86UW1 340 aa29.39■■■□□ 2.3
ACTN1-220ENST00000556433 DBF4Q9UBU7 674 aaPredicted RBP29.39■■■□□ 2.3
ACTN1-220ENST00000556433 HACL1Q9UJ83 578 aa29.38■■■□□ 2.29
ACTN1-220ENST00000556433 ANKRD13DQ6ZTN6 518 aa29.37■■■□□ 2.29
ACTN1-220ENST00000556433 LDHDQ86WU2 507 aa29.37■■■□□ 2.29
ACTN1-220ENST00000556433 LARGE2Q8N3Y3 721 aa29.37■■■□□ 2.29
ACTN1-220ENST00000556433 PLBD2Q8NHP8 589 aa29.37■■■□□ 2.29
ACTN1-220ENST00000556433 ZNF853P0CG23 659 aa29.36■■■□□ 2.29
ACTN1-220ENST00000556433 EIF6P56537 245 aaKnown RBP29.36■■■□□ 2.29
ACTN1-220ENST00000556433 EAPPQ56P03 285 aaPredicted RBP29.36■■■□□ 2.29
ACTN1-220ENST00000556433 GPC2Q8N158 579 aa29.36■■■□□ 2.29
ACTN1-220ENST00000556433 ATP6V0A2Q9Y487 856 aa29.36■■■□□ 2.29
ACTN1-220ENST00000556433 SH3TC1Q8TE82 1336 aa29.36■■■□□ 2.29
ACTN1-220ENST00000556433 ZNF428Q96B54 188 aa29.35■■■□□ 2.29
ACTN1-220ENST00000556433 HYPKQ9NX55 129 aa29.35■■■□□ 2.29
ACTN1-220ENST00000556433 ABCC4O15439 1325 aa29.35■■■□□ 2.29
ACTN1-220ENST00000556433 BBOX1O75936 387 aa29.34■■■□□ 2.29
ACTN1-220ENST00000556433 EPHX2P34913 555 aa29.34■■■□□ 2.29
ACTN1-220ENST00000556433 CALD1Q05682 793 aaKnown RBP29.34■■■□□ 2.29
ACTN1-220ENST00000556433 IFT57Q9NWB7 429 aa29.34■■■□□ 2.29
ACTN1-220ENST00000556433 GNAI1P63096 354 aa29.33■■■□□ 2.29
ACTN1-220ENST00000556433 CLEC11AQ9Y240 323 aa29.33■■■□□ 2.29
ACTN1-220ENST00000556433 GJA3Q9Y6H8 435 aa29.33■■■□□ 2.29
ACTN1-220ENST00000556433 SCN4AP35499 1836 aa29.32■■■□□ 2.28
ACTN1-220ENST00000556433 DDX46Q7L014 1031 aaKnown RBP29.32■■■□□ 2.28
ACTN1-220ENST00000556433 ELL2O00472 640 aaPredicted RBP29.31■■■□□ 2.28
ACTN1-220ENST00000556433 SP8Q8IXZ3 490 aa29.31■■■□□ 2.28
ACTN1-220ENST00000556433 ISCA1Q9BUE6 129 aa29.31■■■□□ 2.28
ACTN1-220ENST00000556433 ATP5J2-PTCD1G3V325 749 aa29.3■■■□□ 2.28
ACTN1-220ENST00000556433 PPIP5K2O43314 1243 aa29.3■■■□□ 2.28
ACTN1-220ENST00000556433 PNMA8AQ86V59 439 aaPredicted RBP29.3■■■□□ 2.28
ACTN1-220ENST00000556433 NIM1KQ8IY84 436 aa29.3■■■□□ 2.28
ACTN1-220ENST00000556433 CREBZFQ9NS37 354 aa29.3■■■□□ 2.28
ACTN1-220ENST00000556433 ANKRD36CQ5JPF3 1778 aa29.29■■■□□ 2.28
ACTN1-220ENST00000556433 COL4A5P29400 1685 aa29.28■■■□□ 2.28
ACTN1-220ENST00000556433 GRAPQ13588 217 aa29.28■■■□□ 2.28
ACTN1-220ENST00000556433 AOC3Q16853 763 aa29.28■■■□□ 2.28
ACTN1-220ENST00000556433 SUPT20HQ8NEM7 779 aa29.28■■■□□ 2.28
ACTN1-220ENST00000556433 GRAPLQ8TC17 118 aaPredicted RBP29.28■■■□□ 2.28
ACTN1-220ENST00000556433 FAM89AQ96GI7 184 aa29.28■■■□□ 2.28
ACTN1-220ENST00000556433 VPS33BQ9H267 617 aa29.28■■■□□ 2.28
ACTN1-220ENST00000556433 DPP8Q6V1X1 898 aaPredicted RBP29.27■■■□□ 2.28
ACTN1-220ENST00000556433 MPNDQ8N594 471 aa29.27■■■□□ 2.28
ACTN1-220ENST00000556433 PASKQ96RG2 1323 aa29.26■■■□□ 2.27
ACTN1-220ENST00000556433 ITGBL1O95965 494 aaPredicted RBP29.26■■■□□ 2.27
ACTN1-220ENST00000556433 LMOD1P29536 600 aaPredicted RBP29.26■■■□□ 2.27
ACTN1-220ENST00000556433 CCDC184Q52MB2 194 aa29.26■■■□□ 2.27
ACTN1-220ENST00000556433 RIC3Q7Z5B4 369 aa29.26■■■□□ 2.27
ACTN1-220ENST00000556433 RTFDC1Q9BY42 306 aaPredicted RBP29.26■■■□□ 2.27
ACTN1-220ENST00000556433 GOLGA2Q08379 1002 aa29.24■■■□□ 2.27
ACTN1-220ENST00000556433 TRIM28Q13263 835 aaKnown RBP29.24■■■□□ 2.27
ACTN1-220ENST00000556433 RTL5Q5HYW3 569 aaPredicted RBP29.24■■■□□ 2.27
ACTN1-220ENST00000556433 C8orf58Q8NAV2 365 aa29.24■■■□□ 2.27
ACTN1-220ENST00000556433 PHAXQ9H814 394 aaKnown RBP29.24■■■□□ 2.27
Retrieved 100 of 20,778 RNA–protein pairs in 69.3 ms