RNA–Protein interactions for RNA: ENST00000556412.4

VIPAS39-208, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 2 BASIC

Gene VIPAS39, Length 1,832 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-208ENST00000556412 UTP14AQ9BVJ6 771 aaKnown RBP17.77■□□□□ 0.44
VIPAS39-208ENST00000556412 PPP1R1BQ9UD71 204 aaPredicted RBP17.77■□□□□ 0.44
VIPAS39-208ENST00000556412 RRP1P56182 461 aaKnown RBP17.77■□□□□ 0.43
VIPAS39-208ENST00000556412 TPTE2Q6XPS3 522 aa17.77■□□□□ 0.43
VIPAS39-208ENST00000556412 JARID2Q92833 1246 aaPredicted RBP17.77■□□□□ 0.43
VIPAS39-208ENST00000556412 SUPT16HQ9Y5B9 1047 aaKnown RBP17.77■□□□□ 0.43
VIPAS39-208ENST00000556412 ABCC4O15439 1325 aa17.76■□□□□ 0.43
VIPAS39-208ENST00000556412 CCT4P50991 539 aaKnown RBP17.76■□□□□ 0.43
VIPAS39-208ENST00000556412 TRIM28Q13263 835 aaKnown RBP17.76■□□□□ 0.43
VIPAS39-208ENST00000556412 PANK1Q8TE04 598 aa17.76■□□□□ 0.43
VIPAS39-208ENST00000556412 SGIP1Q9BQI5 828 aa17.76■□□□□ 0.43
VIPAS39-208ENST00000556412 NYXQ9GZU5 481 aa17.76■□□□□ 0.43
VIPAS39-208ENST00000556412 NTSR2O95665 410 aa17.75■□□□□ 0.43
VIPAS39-208ENST00000556412 GCKRQ14397 625 aa17.75■□□□□ 0.43
VIPAS39-208ENST00000556412 TMEM57Q8N5G2 664 aa17.75■□□□□ 0.43
VIPAS39-208ENST00000556412 FAM89AQ96GI7 184 aa17.75■□□□□ 0.43
VIPAS39-208ENST00000556412 ALDH1L1O75891 902 aa17.75■□□□□ 0.43
VIPAS39-208ENST00000556412 RLBP1P12271 317 aa17.75■□□□□ 0.43
VIPAS39-208ENST00000556412 ST5P78524 1137 aa17.75■□□□□ 0.43
VIPAS39-208ENST00000556412 ERFEQ4G0M1 354 aa17.75■□□□□ 0.43
VIPAS39-208ENST00000556412 PRR5LQ6MZQ0 368 aa17.75■□□□□ 0.43
VIPAS39-208ENST00000556412 C9orf78Q9NZ63 289 aaPredicted RBP17.75■□□□□ 0.43
VIPAS39-208ENST00000556412 ARFGEF2Q9Y6D5 1785 aa17.74■□□□□ 0.43
VIPAS39-208ENST00000556412 MS4A1P11836 297 aa17.74■□□□□ 0.43
VIPAS39-208ENST00000556412 ITPRIPQ8IWB1 547 aa17.74■□□□□ 0.43
VIPAS39-208ENST00000556412 SYNE4Q8N205 404 aa17.74■□□□□ 0.43
VIPAS39-208ENST00000556412 SH3TC1Q8TE82 1336 aa17.73■□□□□ 0.43
VIPAS39-208ENST00000556412 C20orf194Q5TEA3 1177 aa17.73■□□□□ 0.43
VIPAS39-208ENST00000556412 UBE3BQ7Z3V4 1068 aa17.73■□□□□ 0.43
VIPAS39-208ENST00000556412 PXDNLA1KZ92 1463 aa17.73■□□□□ 0.43
VIPAS39-208ENST00000556412 INTS3Q68E01 1043 aaKnown RBP17.72■□□□□ 0.43
VIPAS39-208ENST00000556412 ZBTB38Q8NAP3 1195 aaPredicted RBP17.72■□□□□ 0.43
VIPAS39-208ENST00000556412 ABCC12Q96J65 1359 aa17.71■□□□□ 0.43
VIPAS39-208ENST00000556412 GRM8O00222 908 aa17.71■□□□□ 0.43
VIPAS39-208ENST00000556412 PCCAP05165 728 aaPredicted RBP17.71■□□□□ 0.43
VIPAS39-208ENST00000556412 HCLS1P14317 486 aaPredicted RBP17.71■□□□□ 0.43
VIPAS39-208ENST00000556412 COG6Q9Y2V7 657 aa17.71■□□□□ 0.43
VIPAS39-208ENST00000556412 IBTKQ9P2D0 1353 aaPredicted RBP17.7■□□□□ 0.42
VIPAS39-208ENST00000556412 IRS4O14654 1257 aaPredicted RBP17.7■□□□□ 0.42
VIPAS39-208ENST00000556412 RNF123Q5XPI4 1314 aa17.69■□□□□ 0.42
VIPAS39-208ENST00000556412 H7C1W4 665 aa17.69■□□□□ 0.42
VIPAS39-208ENST00000556412 NBPF7P0C2Y1 421 aaPredicted RBP17.69■□□□□ 0.42
VIPAS39-208ENST00000556412 PDE3AQ14432 1141 aa17.69■□□□□ 0.42
VIPAS39-208ENST00000556412 NUP98P52948 1817 aa17.69■□□□□ 0.42
VIPAS39-208ENST00000556412 MEIS3Q99687 375 aa17.68■□□□□ 0.42
VIPAS39-208ENST00000556412 BRIP1Q9BX63 1249 aa17.68■□□□□ 0.42
VIPAS39-208ENST00000556412 USP44Q9H0E7 712 aa17.68■□□□□ 0.42
VIPAS39-208ENST00000556412 C10orf71Q711Q0 1435 aa17.67■□□□□ 0.42
VIPAS39-208ENST00000556412 CACNA1FO60840 1977 aa17.67■□□□□ 0.42
VIPAS39-208ENST00000556412 UBTFL1P0CB47 393 aaPredicted RBP17.67■□□□□ 0.42
VIPAS39-208ENST00000556412 MVPQ14764 893 aaKnown RBP17.67■□□□□ 0.42
VIPAS39-208ENST00000556412 FHDC1Q9C0D6 1143 aaPredicted RBP17.67■□□□□ 0.42
VIPAS39-208ENST00000556412 HSP90B1P14625 803 aaKnown RBP17.66■□□□□ 0.42
VIPAS39-208ENST00000556412 PDE6BP35913 854 aa17.66■□□□□ 0.42
VIPAS39-208ENST00000556412 C3orf67Q6ZVT6 689 aa17.66■□□□□ 0.42
VIPAS39-208ENST00000556412 NLRP3Q96P20 1036 aa17.66■□□□□ 0.42
VIPAS39-208ENST00000556412 CCDC85AQ96PX6 553 aaPredicted RBP17.66■□□□□ 0.42
VIPAS39-208ENST00000556412 COL24A1Q17RW2 1714 aa17.66■□□□□ 0.42
VIPAS39-208ENST00000556412 ANKRD36CQ5JPF3 1778 aa17.65■□□□□ 0.42
VIPAS39-208ENST00000556412 CASP7P55210 303 aa17.65■□□□□ 0.42
VIPAS39-208ENST00000556412 IRX6P78412 446 aaPredicted RBP17.65■□□□□ 0.42
VIPAS39-208ENST00000556412 SUCLG2Q96I99 432 aa17.65■□□□□ 0.42
VIPAS39-208ENST00000556412 CDHR2Q9BYE9 1310 aa17.65■□□□□ 0.42
VIPAS39-208ENST00000556412 GNAI3P08754 354 aa17.65■□□□□ 0.42
VIPAS39-208ENST00000556412 CHRNA5P30532 468 aa17.65■□□□□ 0.42
VIPAS39-208ENST00000556412 SLC10A5Q5PT55 438 aa17.65■□□□□ 0.42
VIPAS39-208ENST00000556412 C2CD5Q86YS7 1000 aa17.65■□□□□ 0.42
VIPAS39-208ENST00000556412 CD2APQ9Y5K6 639 aa17.65■□□□□ 0.42
VIPAS39-208ENST00000556412 PDE8AO60658 829 aa17.64■□□□□ 0.41
VIPAS39-208ENST00000556412 WWC3Q9ULE0 1092 aa17.64■□□□□ 0.41
VIPAS39-208ENST00000556412 DDX19BQ9UMR2 479 aa17.64■□□□□ 0.41
VIPAS39-208ENST00000556412 UTYO14607 1347 aa17.63■□□□□ 0.41
VIPAS39-208ENST00000556412 A0A0G2JLW4 131 aa17.63■□□□□ 0.41
VIPAS39-208ENST00000556412 H0YIN7 160 aa17.63■□□□□ 0.41
VIPAS39-208ENST00000556412 RPGRQ92834 1020 aaKnown RBP17.63■□□□□ 0.41
VIPAS39-208ENST00000556412 CHMP3Q9Y3E7 222 aa17.63■□□□□ 0.41
VIPAS39-208ENST00000556412 CTSWP56202 376 aa17.63■□□□□ 0.41
VIPAS39-208ENST00000556412 NLGN2Q8NFZ4 835 aa17.63■□□□□ 0.41
VIPAS39-208ENST00000556412 CRBNQ96SW2 442 aa17.63■□□□□ 0.41
VIPAS39-208ENST00000556412 LRRFIP2Q9Y608 721 aaKnown RBP17.63■□□□□ 0.41
VIPAS39-208ENST00000556412 ZBTB7BO15156 539 aaPredicted RBP17.62■□□□□ 0.41
VIPAS39-208ENST00000556412 DPEP1P16444 411 aa17.62■□□□□ 0.41
VIPAS39-208ENST00000556412 EPHA10Q5JZY3 1008 aa17.62■□□□□ 0.41
VIPAS39-208ENST00000556412 ZNF622Q969S3 477 aaKnown RBP eCLIP17.62■□□□□ 0.41
VIPAS39-208ENST00000556412 C1orf115Q9H7X2 142 aa17.62■□□□□ 0.41
VIPAS39-208ENST00000556412 TGFB2P61812 414 aa17.61■□□□□ 0.41
VIPAS39-208ENST00000556412 SYT17Q9BSW7 474 aa17.61■□□□□ 0.41
VIPAS39-208ENST00000556412 BICC1Q9H694 974 aaKnown RBP17.61■□□□□ 0.41
VIPAS39-208ENST00000556412 HDAC5Q9UQL6 1122 aa17.61■□□□□ 0.41
VIPAS39-208ENST00000556412 NRXN2Q9P2S2 1712 aa17.61■□□□□ 0.41
VIPAS39-208ENST00000556412 GNAI2P04899 355 aa17.61■□□□□ 0.41
VIPAS39-208ENST00000556412 CCDC152Q4G0S7 254 aa17.61■□□□□ 0.41
VIPAS39-208ENST00000556412 LMBR1LQ6UX01 489 aa17.61■□□□□ 0.41
VIPAS39-208ENST00000556412 RIC1Q4ADV7 1423 aa17.6■□□□□ 0.41
VIPAS39-208ENST00000556412 AFDNP55196 1824 aaKnown RBP17.6■□□□□ 0.41
VIPAS39-208ENST00000556412 SRGNP10124 158 aa17.6■□□□□ 0.41
VIPAS39-208ENST00000556412 FOXO4P98177 505 aa17.6■□□□□ 0.41
VIPAS39-208ENST00000556412 KAZALD1Q96I82 304 aa17.6■□□□□ 0.41
VIPAS39-208ENST00000556412 PLA2G12BQ9BX93 195 aa17.6■□□□□ 0.41
VIPAS39-208ENST00000556412 KLRG2A4D1S0 409 aaPredicted RBP17.59■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms