RNA–Protein interactions for RNA: ENST00000556353.1

PRPF39-209, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 687 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-209ENST00000556353 ARID3CA6NKF2 412 aa10.47□□□□□ -0.73
PRPF39-209ENST00000556353 ELOA3DA6NLF2 546 aaPredicted RBP10.47□□□□□ -0.73
PRPF39-209ENST00000556353 ATG7O95352 703 aa10.47□□□□□ -0.73
PRPF39-209ENST00000556353 DGKGP49619 791 aa10.47□□□□□ -0.73
PRPF39-209ENST00000556353 ELOA3BQ3SY89 546 aa10.47□□□□□ -0.73
PRPF39-209ENST00000556353 LINC00114Q6XXX2 140 aa10.47□□□□□ -0.73
PRPF39-209ENST00000556353 ELOA3Q8NG57 546 aa10.47□□□□□ -0.73
PRPF39-209ENST00000556353 KLK14Q9P0G3 267 aa10.47□□□□□ -0.73
PRPF39-209ENST00000556353 GNB5O14775 395 aa10.46□□□□□ -0.73
PRPF39-209ENST00000556353 RAB44Q7Z6P3 723 aaPredicted RBP10.46□□□□□ -0.73
PRPF39-209ENST00000556353 STK32AQ8WU08 396 aa10.46□□□□□ -0.73
PRPF39-209ENST00000556353 PBXIP1Q96AQ6 731 aa10.46□□□□□ -0.73
PRPF39-209ENST00000556353 QTRT2Q9H974 415 aaKnown RBP10.46□□□□□ -0.73
PRPF39-209ENST00000556353 BCS1LQ9Y276 419 aa10.46□□□□□ -0.73
PRPF39-209ENST00000556353 ADARB2-AS1A8MUL3 147 aa10.45□□□□□ -0.74
PRPF39-209ENST00000556353 PRMT3O60678 531 aa10.45□□□□□ -0.74
PRPF39-209ENST00000556353 DGKZQ13574 1117 aa10.45□□□□□ -0.74
PRPF39-209ENST00000556353 TNFRSF25Q93038 417 aa10.45□□□□□ -0.74
PRPF39-209ENST00000556353 MYO19Q96H55 970 aa10.45□□□□□ -0.74
PRPF39-209ENST00000556353 PRIMPOLQ96LW4 560 aa10.45□□□□□ -0.74
PRPF39-209ENST00000556353 FKBP5Q13451 457 aaPredicted RBP10.44□□□□□ -0.74
PRPF39-209ENST00000556353 GPAT2Q6NUI2 795 aa10.44□□□□□ -0.74
PRPF39-209ENST00000556353 ALYREFQ86V81 257 aaKnown RBP10.44□□□□□ -0.74
PRPF39-209ENST00000556353 BHMTQ93088 406 aa10.44□□□□□ -0.74
PRPF39-209ENST00000556353 MDFIQ99750 246 aa10.44□□□□□ -0.74
PRPF39-209ENST00000556353 EPB42P16452 691 aa10.43□□□□□ -0.74
PRPF39-209ENST00000556353 C11orf91Q3C1V1 193 aa10.43□□□□□ -0.74
PRPF39-209ENST00000556353 DMGDHQ9UI17 866 aaKnown RBP10.43□□□□□ -0.74
PRPF39-209ENST00000556353 IGHA1P01876 353 aa10.42□□□□□ -0.74
PRPF39-209ENST00000556353 IDH3AP50213 366 aa10.42□□□□□ -0.74
PRPF39-209ENST00000556353 FAM69CQ0P6D2 419 aa10.42□□□□□ -0.74
PRPF39-209ENST00000556353 EFCC1Q9HA90 598 aa10.42□□□□□ -0.74
PRPF39-209ENST00000556353 NOP53Q9NZM5 478 aaKnown RBP10.42□□□□□ -0.74
PRPF39-209ENST00000556353 COL8A1P27658 744 aa10.41□□□□□ -0.74
PRPF39-209ENST00000556353 ADH7P40394 386 aa10.41□□□□□ -0.74
PRPF39-209ENST00000556353 OCLNQ16625 522 aa10.41□□□□□ -0.74
PRPF39-209ENST00000556353 PLA2G4EQ3MJ16 856 aa10.41□□□□□ -0.74
PRPF39-209ENST00000556353 TMEM164Q5U3C3 297 aa10.41□□□□□ -0.74
PRPF39-209ENST00000556353 PNMA5Q96PV4 448 aa10.41□□□□□ -0.74
PRPF39-209ENST00000556353 SUV39H2Q9H5I1 410 aa10.41□□□□□ -0.74
PRPF39-209ENST00000556353 MICAL2O94851 1124 aa10.39□□□□□ -0.75
PRPF39-209ENST00000556353 INPP5BP32019 993 aa10.39□□□□□ -0.75
PRPF39-209ENST00000556353 ARSDP51689 593 aa10.39□□□□□ -0.75
PRPF39-209ENST00000556353 CCINQ13939 588 aa10.39□□□□□ -0.75
PRPF39-209ENST00000556353 GSX2Q9BZM3 304 aa10.39□□□□□ -0.75
PRPF39-209ENST00000556353 TBC1D8BQ0IIM8 1120 aa10.38□□□□□ -0.75
PRPF39-209ENST00000556353 C14orf37Q86TY3 774 aa10.38□□□□□ -0.75
PRPF39-209ENST00000556353 IFT43Q96FT9 208 aa10.38□□□□□ -0.75
PRPF39-209ENST00000556353 UBE2OQ9C0C9 1292 aaKnown RBP10.38□□□□□ -0.75
PRPF39-209ENST00000556353 CXXC1Q9P0U4 656 aaPredicted RBP10.38□□□□□ -0.75
PRPF39-209ENST00000556353 LRFN2Q9ULH4 789 aa10.38□□□□□ -0.75
PRPF39-209ENST00000556353 GTF3C5Q9Y5Q8 519 aaPredicted RBP10.38□□□□□ -0.75
PRPF39-209ENST00000556353 COX20Q5RI15 118 aa10.37□□□□□ -0.75
PRPF39-209ENST00000556353 CCDC82Q8N4S0 544 aa10.37□□□□□ -0.75
PRPF39-209ENST00000556353 KRBA1A5PL33 1030 aa10.36□□□□□ -0.75
PRPF39-209ENST00000556353 M0R082 166 aa10.36□□□□□ -0.75
PRPF39-209ENST00000556353 NFKB1P19838 968 aa10.36□□□□□ -0.75
PRPF39-209ENST00000556353 ZNF417Q8TAU3 575 aa10.36□□□□□ -0.75
PRPF39-209ENST00000556353 CLP1Q92989 425 aaKnown RBP10.36□□□□□ -0.75
PRPF39-209ENST00000556353 COL26A1Q96A83 441 aa10.36□□□□□ -0.75
PRPF39-209ENST00000556353 TRIM11Q96F44 468 aa10.36□□□□□ -0.75
PRPF39-209ENST00000556353 ZNF587Q96SQ5 575 aaPredicted RBP10.36□□□□□ -0.75
PRPF39-209ENST00000556353 IGFLR1Q9H665 355 aa10.36□□□□□ -0.75
PRPF39-209ENST00000556353 STARD13Q9Y3M8 1113 aa10.36□□□□□ -0.75
PRPF39-209ENST00000556353 MSTNO14793 375 aa10.35□□□□□ -0.75
PRPF39-209ENST00000556353 GRNP28799 593 aaKnown RBP10.35□□□□□ -0.75
PRPF39-209ENST00000556353 C16orf46Q6P387 395 aa10.35□□□□□ -0.75
PRPF39-209ENST00000556353 MKNK1Q9BUB5 465 aa10.35□□□□□ -0.75
PRPF39-209ENST00000556353 C11orf16Q9NQ32 467 aa10.35□□□□□ -0.75
PRPF39-209ENST00000556353 ALBP02768 609 aa10.34□□□□□ -0.75
PRPF39-209ENST00000556353 TREML1Q86YW5 311 aa10.34□□□□□ -0.75
PRPF39-209ENST00000556353 PLVAPQ9BX97 442 aa10.34□□□□□ -0.75
PRPF39-209ENST00000556353 SPDYE3A6NKU9 549 aa10.33□□□□□ -0.76
PRPF39-209ENST00000556353 PTCD1O75127 700 aaKnown RBP10.33□□□□□ -0.76
PRPF39-209ENST00000556353 ITGB2P05107 769 aa10.33□□□□□ -0.76
PRPF39-209ENST00000556353 MICALL1Q8N3F8 863 aa10.33□□□□□ -0.76
PRPF39-209ENST00000556353 PRDM6Q9NQX0 595 aa10.33□□□□□ -0.76
PRPF39-209ENST00000556353 SLC6A14Q9UN76 642 aa10.33□□□□□ -0.76
PRPF39-209ENST00000556353 OPLAHO14841 1288 aa10.32□□□□□ -0.76
PRPF39-209ENST00000556353 BRD2P25440 801 aaKnown RBP10.32□□□□□ -0.76
PRPF39-209ENST00000556353 SPOCK3Q9BQ16 436 aa10.32□□□□□ -0.76
PRPF39-209ENST00000556353 SAP130Q9H0E3 1048 aa10.32□□□□□ -0.76
PRPF39-209ENST00000556353 DNAJB12Q9NXW2 375 aaKnown RBP10.32□□□□□ -0.76
PRPF39-209ENST00000556353 RTCBQ9Y3I0 505 aaKnown RBP10.32□□□□□ -0.76
PRPF39-209ENST00000556353 MAP3K6O95382 1288 aa10.31□□□□□ -0.76
PRPF39-209ENST00000556353 KRT25Q7Z3Z0 450 aa10.31□□□□□ -0.76
PRPF39-209ENST00000556353 RGL4Q8IZJ4 473 aa10.31□□□□□ -0.76
PRPF39-209ENST00000556353 ATP2B4P23634 1241 aa10.3□□□□□ -0.76
PRPF39-209ENST00000556353 NAA30Q147X3 362 aaPredicted RBP10.3□□□□□ -0.76
PRPF39-209ENST00000556353 PCSK7Q16549 785 aa10.3□□□□□ -0.76
PRPF39-209ENST00000556353 C20orf204Q6ZNR8 217 aa10.3□□□□□ -0.76
PRPF39-209ENST00000556353 CAPN12Q6ZSI9 719 aa10.3□□□□□ -0.76
PRPF39-209ENST00000556353 C8orf86Q6ZUL3 223 aa10.3□□□□□ -0.76
PRPF39-209ENST00000556353 C1orf115Q9H7X2 142 aa10.3□□□□□ -0.76
PRPF39-209ENST00000556353 USP20Q9Y2K6 914 aa10.3□□□□□ -0.76
PRPF39-209ENST00000556353 LILRB5O75023 590 aa10.29□□□□□ -0.76
PRPF39-209ENST00000556353 PPP1R15AO75807 674 aaPredicted RBP10.29□□□□□ -0.76
PRPF39-209ENST00000556353 SASH3O75995 380 aa10.29□□□□□ -0.76
PRPF39-209ENST00000556353 SPATA31C1P0DKV0 1188 aa10.29□□□□□ -0.76
PRPF39-209ENST00000556353 RARAP10276 462 aa10.29□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms