RNA–Protein interactions for RNA: ENST00000556083.1

ACTN1-216, Transcript of actinin alpha 1, humanhuman

TSL 1 (best)

Gene ACTN1, Length 4,674 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-216ENST00000556083 SPC24Q8NBT2 197 aa12.35□□□□□ -0.43
ACTN1-216ENST00000556083 SCLT1Q96NL6 688 aa12.35□□□□□ -0.43
ACTN1-216ENST00000556083 PPP1R1BQ9UD71 204 aaPredicted RBP12.35□□□□□ -0.43
ACTN1-216ENST00000556083 RANBP6O60518 1105 aaKnown RBP12.34□□□□□ -0.43
ACTN1-216ENST00000556083 CALML3P27482 149 aa12.34□□□□□ -0.43
ACTN1-216ENST00000556083 LUZP1Q86V48 1076 aa12.34□□□□□ -0.43
ACTN1-216ENST00000556083 KCNG4Q8TDN1 519 aa12.34□□□□□ -0.43
ACTN1-216ENST00000556083 ESR2Q92731 530 aa12.34□□□□□ -0.43
ACTN1-216ENST00000556083 ZFYVE9O95405 1425 aa12.34□□□□□ -0.43
ACTN1-216ENST00000556083 RBM25P49756 843 aaKnown RBP12.34□□□□□ -0.43
ACTN1-216ENST00000556083 KDM5BQ9UGL1 1544 aa12.34□□□□□ -0.43
ACTN1-216ENST00000556083 RAD50Q92878 1312 aa12.34□□□□□ -0.43
ACTN1-216ENST00000556083 BOLA2Q9H3K6 86 aa12.34□□□□□ -0.43
ACTN1-216ENST00000556083 NGLY1Q96IV0 654 aa12.34□□□□□ -0.43
ACTN1-216ENST00000556083 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP12.34□□□□□ -0.43
ACTN1-216ENST00000556083 NUTM1Q86Y26 1132 aa12.33□□□□□ -0.44
ACTN1-216ENST00000556083 NEK1Q96PY6 1258 aa12.33□□□□□ -0.44
ACTN1-216ENST00000556083 PLCH2O75038 1416 aa12.33□□□□□ -0.44
ACTN1-216ENST00000556083 PTCD1O75127 700 aaKnown RBP12.33□□□□□ -0.44
ACTN1-216ENST00000556083 UBE2HP62256 183 aa12.33□□□□□ -0.44
ACTN1-216ENST00000556083 SREK1Q8WXA9 508 aaKnown RBP12.33□□□□□ -0.44
ACTN1-216ENST00000556083 STK24Q9Y6E0 443 aa12.33□□□□□ -0.44
ACTN1-216ENST00000556083 EIF2AK4Q9P2K8 1649 aaKnown RBP12.33□□□□□ -0.44
ACTN1-216ENST00000556083 TTC41PQ6P2S7 1318 aa12.33□□□□□ -0.44
ACTN1-216ENST00000556083 ACTN2P35609 894 aa12.33□□□□□ -0.44
ACTN1-216ENST00000556083 AKAP4Q5JQC9 854 aa12.33□□□□□ -0.44
ACTN1-216ENST00000556083 PPM1EQ8WY54 764 aa12.33□□□□□ -0.44
ACTN1-216ENST00000556083 ZNF518AQ6AHZ1 1483 aa12.32□□□□□ -0.44
ACTN1-216ENST00000556083 ANKRD13DQ6ZTN6 518 aa12.32□□□□□ -0.44
ACTN1-216ENST00000556083 APBB1IPQ7Z5R6 666 aaPredicted RBP12.32□□□□□ -0.44
ACTN1-216ENST00000556083 CGNQ9P2M7 1197 aaKnown RBP12.32□□□□□ -0.44
ACTN1-216ENST00000556083 CKAP4Q07065 602 aaKnown RBP12.32□□□□□ -0.44
ACTN1-216ENST00000556083 MCM10Q7L590 875 aa12.32□□□□□ -0.44
ACTN1-216ENST00000556083 GLT8D2Q9H1C3 349 aa12.32□□□□□ -0.44
ACTN1-216ENST00000556083 CASQ1P31415 396 aa12.32□□□□□ -0.44
ACTN1-216ENST00000556083 KIF4BQ2VIQ3 1234 aa12.32□□□□□ -0.44
ACTN1-216ENST00000556083 TMEM67Q5HYA8 995 aa12.32□□□□□ -0.44
ACTN1-216ENST00000556083 CCDC174Q6PII3 467 aa12.32□□□□□ -0.44
ACTN1-216ENST00000556083 BCL11BQ9C0K0 894 aaPredicted RBP12.32□□□□□ -0.44
ACTN1-216ENST00000556083 NOS1P29475 1434 aa12.32□□□□□ -0.44
ACTN1-216ENST00000556083 TSPY2A6NKD2 308 aa12.32□□□□□ -0.44
ACTN1-216ENST00000556083 TAX1BP1Q86VP1 789 aa12.32□□□□□ -0.44
ACTN1-216ENST00000556083 NME9Q86XW9 330 aa12.32□□□□□ -0.44
ACTN1-216ENST00000556083 TRPM2O94759 1503 aa12.32□□□□□ -0.44
ACTN1-216ENST00000556083 STX6O43752 255 aa12.31□□□□□ -0.44
ACTN1-216ENST00000556083 RRP9O43818 475 aaKnown RBP12.31□□□□□ -0.44
ACTN1-216ENST00000556083 BICDL1Q6ZP65 573 aa12.31□□□□□ -0.44
ACTN1-216ENST00000556083 TBCAO75347 108 aaKnown RBP12.31□□□□□ -0.44
ACTN1-216ENST00000556083 METAP2P50579 478 aaKnown RBP eCLIP12.31□□□□□ -0.442e-6■■■□□ 17.8
ACTN1-216ENST00000556083 RTL9Q8NET4 1388 aa12.31□□□□□ -0.44
ACTN1-216ENST00000556083 ITSN2Q9NZM3 1697 aa12.31□□□□□ -0.44
ACTN1-216ENST00000556083 ANKRD2Q9GZV1 360 aa12.31□□□□□ -0.44
ACTN1-216ENST00000556083 USP16Q9Y5T5 823 aa12.31□□□□□ -0.44
ACTN1-216ENST00000556083 RFC4P35249 363 aa12.31□□□□□ -0.44
ACTN1-216ENST00000556083 MTIF2P46199 727 aaKnown RBP12.31□□□□□ -0.44
ACTN1-216ENST00000556083 MAP2K1Q02750 393 aaPredicted RBP12.31□□□□□ -0.44
ACTN1-216ENST00000556083 PIBF1Q8WXW3 757 aa12.31□□□□□ -0.44
ACTN1-216ENST00000556083 NLRP3Q96P20 1036 aa12.31□□□□□ -0.44
ACTN1-216ENST00000556083 POLR3AO14802 1390 aaPredicted RBP12.3□□□□□ -0.44
ACTN1-216ENST00000556083 C6orf229H3BNL8 230 aa12.3□□□□□ -0.44
ACTN1-216ENST00000556083 SSR1P43307 286 aaKnown RBP12.3□□□□□ -0.44
ACTN1-216ENST00000556083 CCDC40Q4G0X9 1142 aa12.3□□□□□ -0.44
ACTN1-216ENST00000556083 DYDC1Q8WWB3 177 aa12.3□□□□□ -0.44
ACTN1-216ENST00000556083 EYA3Q99504 573 aa12.3□□□□□ -0.44
ACTN1-216ENST00000556083 HOXB7P09629 217 aa12.3□□□□□ -0.44
ACTN1-216ENST00000556083 WAPLQ7Z5K2 1190 aa12.3□□□□□ -0.44
ACTN1-216ENST00000556083 LMBR1Q8WVP7 490 aa12.3□□□□□ -0.44
ACTN1-216ENST00000556083 TBC1D5Q92609 795 aa12.3□□□□□ -0.44
ACTN1-216ENST00000556083 CCDC102AQ96A19 550 aa12.3□□□□□ -0.44
ACTN1-216ENST00000556083 ORC3Q9UBD5 711 aaPredicted RBP12.3□□□□□ -0.44
ACTN1-216ENST00000556083 PAXBP1Q9Y5B6 917 aa12.3□□□□□ -0.44
ACTN1-216ENST00000556083 GSTTP1A0A1W2PQM5 241 aa12.3□□□□□ -0.44
ACTN1-216ENST00000556083 CYLC1P35663 651 aaPredicted RBP12.3□□□□□ -0.44
ACTN1-216ENST00000556083 MSANTD4Q8NCY6 345 aa12.3□□□□□ -0.44
ACTN1-216ENST00000556083 SRRTQ9BXP5 876 aaKnown RBP12.3□□□□□ -0.44
ACTN1-216ENST00000556083 SH2D4AQ9H788 454 aa12.3□□□□□ -0.44
ACTN1-216ENST00000556083 FOXO3O43524 673 aa12.29□□□□□ -0.44
ACTN1-216ENST00000556083 MPRIPQ6WCQ1 1025 aa12.29□□□□□ -0.44
ACTN1-216ENST00000556083 ZNF804AQ7Z570 1209 aa12.29□□□□□ -0.44
ACTN1-216ENST00000556083 FSIP1Q8NA03 581 aa12.29□□□□□ -0.44
ACTN1-216ENST00000556083 ZCRB1Q8TBF4 217 aaKnown RBP12.29□□□□□ -0.44
ACTN1-216ENST00000556083 TTC22Q5TAA0 569 aa12.29□□□□□ -0.44
ACTN1-216ENST00000556083 TSNARE1Q96NA8 513 aa12.29□□□□□ -0.44
ACTN1-216ENST00000556083 MAP3K2Q9Y2U5 619 aa12.29□□□□□ -0.44
ACTN1-216ENST00000556083 FLT4P35916 1363 aa12.29□□□□□ -0.44
ACTN1-216ENST00000556083 WDR97A6NE52 1622 aa12.29□□□□□ -0.44
ACTN1-216ENST00000556083 PABPN1LA6NDY0 278 aaKnown RBP12.29□□□□□ -0.44
ACTN1-216ENST00000556083 MAP4K4O95819 1239 aaPredicted RBP12.29□□□□□ -0.44
ACTN1-216ENST00000556083 WTAPQ15007 396 aa12.29□□□□□ -0.44
ACTN1-216ENST00000556083 SPECC1LQ69YQ0 1117 aa12.29□□□□□ -0.44
ACTN1-216ENST00000556083 KSR2Q6VAB6 950 aa12.29□□□□□ -0.44
ACTN1-216ENST00000556083 OGFOD1Q8N543 542 aa12.29□□□□□ -0.44
ACTN1-216ENST00000556083 LINS1Q8NG48 757 aa12.29□□□□□ -0.44
ACTN1-216ENST00000556083 HOOK2Q96ED9 719 aa12.29□□□□□ -0.44
ACTN1-216ENST00000556083 NUP88Q99567 741 aaPredicted RBP12.29□□□□□ -0.44
ACTN1-216ENST00000556083 STMN4Q9H169 189 aaPredicted RBP12.29□□□□□ -0.44
ACTN1-216ENST00000556083 ASXL1Q8IXJ9 1541 aa12.29□□□□□ -0.44
ACTN1-216ENST00000556083 FSD2A1L4K1 749 aa12.29□□□□□ -0.44
ACTN1-216ENST00000556083 TRIM27P14373 513 aa12.29□□□□□ -0.44
ACTN1-216ENST00000556083 IFFO1Q0D2I5 559 aa12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms