RNA–Protein interactions for RNA: ENST00000555854.1

VIPAS39-207, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 5

Gene VIPAS39, Length 444 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-207ENST00000555854 POTECB2RU33 542 aa12.19□□□□□ -0.46
VIPAS39-207ENST00000555854 TOMM70O94826 608 aa12.19□□□□□ -0.46
VIPAS39-207ENST00000555854 ZNF853P0CG23 659 aa12.19□□□□□ -0.46
VIPAS39-207ENST00000555854 NPR1P16066 1061 aa12.19□□□□□ -0.46
VIPAS39-207ENST00000555854 TAOK3Q9H2K8 898 aa12.19□□□□□ -0.46
VIPAS39-207ENST00000555854 MBIPQ9NS73 344 aa12.19□□□□□ -0.46
VIPAS39-207ENST00000555854 KDM2BQ8NHM5 1336 aa12.18□□□□□ -0.46
VIPAS39-207ENST00000555854 GLTPD2A6NH11 291 aa12.18□□□□□ -0.46
VIPAS39-207ENST00000555854 APAF1O14727 1248 aa12.18□□□□□ -0.46
VIPAS39-207ENST00000555854 XAGE3Q8WTP9 111 aa12.18□□□□□ -0.46
VIPAS39-207ENST00000555854 RRAGCQ9HB90 399 aa12.18□□□□□ -0.46
VIPAS39-207ENST00000555854 COL4A1P02462 1669 aa12.18□□□□□ -0.46
VIPAS39-207ENST00000555854 COPS6Q7L5N1 327 aa12.17□□□□□ -0.46
VIPAS39-207ENST00000555854 RBM46Q8TBY0 533 aaKnown RBP12.17□□□□□ -0.46
VIPAS39-207ENST00000555854 CFAP44Q96MT7 982 aa12.17□□□□□ -0.46
VIPAS39-207ENST00000555854 NYXQ9GZU5 481 aa12.17□□□□□ -0.46
VIPAS39-207ENST00000555854 CHPF2Q9P2E5 772 aa12.17□□□□□ -0.46
VIPAS39-207ENST00000555854 LAS1LQ9Y4W2 734 aaKnown RBP12.17□□□□□ -0.46
VIPAS39-207ENST00000555854 HOXB7P09629 217 aa12.16□□□□□ -0.46
VIPAS39-207ENST00000555854 HOXA10P31260 410 aaPredicted RBP12.16□□□□□ -0.46
VIPAS39-207ENST00000555854 CCDC93Q567U6 631 aa12.16□□□□□ -0.46
VIPAS39-207ENST00000555854 HDGFL1Q5TGJ6 251 aa12.16□□□□□ -0.46
VIPAS39-207ENST00000555854 DDX21Q9NR30 783 aaKnown RBP eCLIP12.16□□□□□ -0.46
VIPAS39-207ENST00000555854 DDX60Q8IY21 1712 aaKnown RBP12.16□□□□□ -0.46
VIPAS39-207ENST00000555854 ZNF541Q9H0D2 1346 aa12.15□□□□□ -0.46
VIPAS39-207ENST00000555854 FKBP4Q02790 459 aaKnown RBP eCLIP12.15□□□□□ -0.46
VIPAS39-207ENST00000555854 AIMP1Q12904 312 aaKnown RBP12.15□□□□□ -0.46
VIPAS39-207ENST00000555854 PARP10Q53GL7 1025 aa12.15□□□□□ -0.46
VIPAS39-207ENST00000555854 SOGA3Q5TF21 947 aa12.15□□□□□ -0.46
VIPAS39-207ENST00000555854 NLRP10Q86W26 655 aa12.15□□□□□ -0.46
VIPAS39-207ENST00000555854 SYNE4Q8N205 404 aa12.15□□□□□ -0.46
VIPAS39-207ENST00000555854 HTRA3P83110 453 aa12.14□□□□□ -0.47
VIPAS39-207ENST00000555854 DUSP27Q5VZP5 1158 aa12.14□□□□□ -0.47
VIPAS39-207ENST00000555854 ZNF277Q9NRM2 450 aaPredicted RBP12.14□□□□□ -0.47
VIPAS39-207ENST00000555854 IFT57Q9NWB7 429 aa12.14□□□□□ -0.47
VIPAS39-207ENST00000555854 DDNO94850 711 aaPredicted RBP12.13□□□□□ -0.47
VIPAS39-207ENST00000555854 GTF2E1P29083 439 aaPredicted RBP12.13□□□□□ -0.47
VIPAS39-207ENST00000555854 ZEB1P37275 1124 aaPredicted RBP12.13□□□□□ -0.47
VIPAS39-207ENST00000555854 ZNF428Q96B54 188 aa12.13□□□□□ -0.47
VIPAS39-207ENST00000555854 LRRC37AA6NMS7 1700 aa12.13□□□□□ -0.47
VIPAS39-207ENST00000555854 DUOX1Q9NRD9 1551 aa12.13□□□□□ -0.47
VIPAS39-207ENST00000555854 ADAMTSL1Q8N6G6 1762 aa12.13□□□□□ -0.47
VIPAS39-207ENST00000555854 ABCC4O15439 1325 aa12.12□□□□□ -0.47
VIPAS39-207ENST00000555854 LTBP1Q14766 1721 aa12.12□□□□□ -0.47
VIPAS39-207ENST00000555854 POTEIP0CG38 1075 aa12.12□□□□□ -0.47
VIPAS39-207ENST00000555854 POTEJP0CG39 1038 aa12.12□□□□□ -0.47
VIPAS39-207ENST00000555854 TCIRG1Q13488 830 aa12.12□□□□□ -0.47
VIPAS39-207ENST00000555854 SLC10A5Q5PT55 438 aa12.12□□□□□ -0.47
VIPAS39-207ENST00000555854 SAMD1Q6SPF0 538 aaPredicted RBP12.12□□□□□ -0.47
VIPAS39-207ENST00000555854 PPP1R42Q7Z4L9 355 aa12.12□□□□□ -0.47
VIPAS39-207ENST00000555854 C8orf58Q8NAV2 365 aa12.12□□□□□ -0.47
VIPAS39-207ENST00000555854 ISCA1Q9BUE6 129 aa12.12□□□□□ -0.47
VIPAS39-207ENST00000555854 UTP14AQ9BVJ6 771 aaKnown RBP12.12□□□□□ -0.47
VIPAS39-207ENST00000555854 TAF1P21675 1872 aa12.12□□□□□ -0.47
VIPAS39-207ENST00000555854 RNF123Q5XPI4 1314 aa12.11□□□□□ -0.47
VIPAS39-207ENST00000555854 ZNF316A6NFI3 1004 aaPredicted RBP12.11□□□□□ -0.47
VIPAS39-207ENST00000555854 PPEF1O14829 653 aaPredicted RBP12.11□□□□□ -0.47
VIPAS39-207ENST00000555854 VEGFAP15692 232 aaPredicted RBP12.11□□□□□ -0.47
VIPAS39-207ENST00000555854 ALDH1B1P30837 517 aa12.11□□□□□ -0.47
VIPAS39-207ENST00000555854 APLP1P51693 650 aa12.11□□□□□ -0.47
VIPAS39-207ENST00000555854 FSTL1Q12841 308 aa12.11□□□□□ -0.47
VIPAS39-207ENST00000555854 HSP90AB3PQ58FF7 597 aa12.11□□□□□ -0.47
VIPAS39-207ENST00000555854 DNAJC5GQ8N7S2 189 aa12.11□□□□□ -0.47
VIPAS39-207ENST00000555854 RPGRQ92834 1020 aaKnown RBP12.11□□□□□ -0.47
VIPAS39-207ENST00000555854 CRAMP1Q96RY5 1269 aa12.11□□□□□ -0.47
VIPAS39-207ENST00000555854 PSMD1Q99460 953 aa12.11□□□□□ -0.47
VIPAS39-207ENST00000555854 DBF4Q9UBU7 674 aaPredicted RBP12.11□□□□□ -0.47
VIPAS39-207ENST00000555854 HCLS1P14317 486 aaPredicted RBP12.1□□□□□ -0.47
VIPAS39-207ENST00000555854 IARSP41252 1262 aaKnown RBP12.1□□□□□ -0.47
VIPAS39-207ENST00000555854 GNAI1P63096 354 aa12.1□□□□□ -0.47
VIPAS39-207ENST00000555854 C16orf71Q8IYS4 520 aaPredicted RBP12.1□□□□□ -0.47
VIPAS39-207ENST00000555854 RTKN2Q8IZC4 609 aa12.1□□□□□ -0.47
VIPAS39-207ENST00000555854 TSPYL6Q8N831 410 aa12.1□□□□□ -0.47
VIPAS39-207ENST00000555854 PLBD2Q8NHP8 589 aa12.1□□□□□ -0.47
VIPAS39-207ENST00000555854 TSR2Q969E8 191 aaKnown RBP12.1□□□□□ -0.47
VIPAS39-207ENST00000555854 L3MBTL3Q96JM7 780 aaPredicted RBP12.1□□□□□ -0.47
VIPAS39-207ENST00000555854 PHAXQ9H814 394 aaKnown RBP12.1□□□□□ -0.47
VIPAS39-207ENST00000555854 SCN4AP35499 1836 aa12.09□□□□□ -0.47
VIPAS39-207ENST00000555854 ATP5J2-PTCD1G3V325 749 aa12.09□□□□□ -0.47
VIPAS39-207ENST00000555854 FZD9O00144 591 aa12.09□□□□□ -0.47
VIPAS39-207ENST00000555854 ELL2O00472 640 aaPredicted RBP12.09□□□□□ -0.47
VIPAS39-207ENST00000555854 SMC1BQ8NDV3 1235 aa12.09□□□□□ -0.47
VIPAS39-207ENST00000555854 SH3TC1Q8TE82 1336 aa12.09□□□□□ -0.47
VIPAS39-207ENST00000555854 TCERG1O14776 1098 aaKnown RBP12.08□□□□□ -0.48
VIPAS39-207ENST00000555854 CCDC27Q2M243 656 aa12.08□□□□□ -0.48
VIPAS39-207ENST00000555854 ANKRD13DQ6ZTN6 518 aa12.08□□□□□ -0.48
VIPAS39-207ENST00000555854 RBM17Q96I25 401 aaKnown RBP12.08□□□□□ -0.48
VIPAS39-207ENST00000555854 NLRP3Q96P20 1036 aa12.08□□□□□ -0.48
VIPAS39-207ENST00000555854 MRS2Q9HD23 443 aa12.08□□□□□ -0.48
VIPAS39-207ENST00000555854 HYPKQ9NX55 129 aa12.08□□□□□ -0.48
VIPAS39-207ENST00000555854 TRMT112Q9UI30 125 aaKnown RBP12.08□□□□□ -0.48
VIPAS39-207ENST00000555854 CALD1Q05682 793 aaKnown RBP12.07□□□□□ -0.48
VIPAS39-207ENST00000555854 CC2D2BQ6DHV5 1058 aa12.07□□□□□ -0.48
VIPAS39-207ENST00000555854 DPY19L2Q6NUT2 758 aa12.07□□□□□ -0.48
VIPAS39-207ENST00000555854 WWC1Q8IX03 1113 aa12.07□□□□□ -0.48
VIPAS39-207ENST00000555854 FAM89AQ96GI7 184 aa12.07□□□□□ -0.48
VIPAS39-207ENST00000555854 ATP6V0A2Q9Y487 856 aa12.07□□□□□ -0.48
VIPAS39-207ENST00000555854 TAF1DQ9H5J8 278 aaPredicted RBP12.06□□□□□ -0.48
VIPAS39-207ENST00000555854 TRIM28Q13263 835 aaKnown RBP12.05□□□□□ -0.48
VIPAS39-207ENST00000555854 GRAPQ13588 217 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms