RNA–Protein interactions for RNA: ENST00000555022.5

SYNE2-217, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 3,396 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-217ENST00000555022 ZNF446Q9NWS9 450 aa10.47□□□□□ -0.73
SYNE2-217ENST00000555022 PTPRCP08575 1304 aa10.47□□□□□ -0.73
SYNE2-217ENST00000555022 MAP3K19Q56UN5 1328 aa10.47□□□□□ -0.73
SYNE2-217ENST00000555022 CAPN2P17655 700 aa10.47□□□□□ -0.73
SYNE2-217ENST00000555022 C10orf67Q8IYJ2 551 aa10.47□□□□□ -0.73
SYNE2-217ENST00000555022 PI4K2BQ8TCG2 481 aa10.47□□□□□ -0.73
SYNE2-217ENST00000555022 DNAI1Q9UI46 699 aa10.47□□□□□ -0.73
SYNE2-217ENST00000555022 CD163L1Q9NR16 1453 aa10.47□□□□□ -0.73
SYNE2-217ENST00000555022 KCNQ3O43525 872 aa10.46□□□□□ -0.73
SYNE2-217ENST00000555022 ME1P48163 572 aa10.46□□□□□ -0.73
SYNE2-217ENST00000555022 PIP4K2AP48426 406 aaPredicted RBP10.46□□□□□ -0.73
SYNE2-217ENST00000555022 OSBPL3Q9H4L5 887 aa10.46□□□□□ -0.73
SYNE2-217ENST00000555022 TET3O43151 1660 aa10.46□□□□□ -0.73
SYNE2-217ENST00000555022 PI4KAP2A4QPH2 592 aa10.46□□□□□ -0.73
SYNE2-217ENST00000555022 URI1O94763 535 aaPredicted RBP10.46□□□□□ -0.73
SYNE2-217ENST00000555022 PDIA4P13667 645 aaKnown RBP10.46□□□□□ -0.73
SYNE2-217ENST00000555022 CREB3L3Q68CJ9 461 aa10.46□□□□□ -0.73
SYNE2-217ENST00000555022 TTLL5Q6EMB2 1281 aa10.46□□□□□ -0.73
SYNE2-217ENST00000555022 LRRC8AQ8IWT6 810 aa10.46□□□□□ -0.73
SYNE2-217ENST00000555022 PI4KAP1Q8N8J0 262 aa10.46□□□□□ -0.73
SYNE2-217ENST00000555022 PPRC1Q5VV67 1664 aaKnown RBP10.46□□□□□ -0.74
SYNE2-217ENST00000555022 A0A0D9SFI3 127 aa10.46□□□□□ -0.74
SYNE2-217ENST00000555022 ST5P78524 1137 aa10.46□□□□□ -0.74
SYNE2-217ENST00000555022 CWF19L2Q2TBE0 894 aaKnown RBP10.46□□□□□ -0.74
SYNE2-217ENST00000555022 BLOC1S2Q6QNY1 142 aa10.46□□□□□ -0.74
SYNE2-217ENST00000555022 CCAR1Q8IX12 1150 aaKnown RBP10.46□□□□□ -0.74
SYNE2-217ENST00000555022 SDF4Q9BRK5 362 aa10.46□□□□□ -0.74
SYNE2-217ENST00000555022 PNPLA6Q8IY17 1366 aa10.46□□□□□ -0.74
SYNE2-217ENST00000555022 ARHGAP31Q2M1Z3 1444 aa10.45□□□□□ -0.74
SYNE2-217ENST00000555022 TRIM66O15016 1216 aa10.45□□□□□ -0.74
SYNE2-217ENST00000555022 SNW1Q13573 536 aaKnown RBP10.45□□□□□ -0.74
SYNE2-217ENST00000555022 ZRSR1Q15695 479 aaKnown RBP10.45□□□□□ -0.74
SYNE2-217ENST00000555022 TMEM87AQ8NBN3 555 aa10.45□□□□□ -0.74
SYNE2-217ENST00000555022 DNAJC2Q99543 621 aaKnown RBP10.45□□□□□ -0.74
SYNE2-217ENST00000555022 GJB4Q9NTQ9 266 aa10.45□□□□□ -0.74
SYNE2-217ENST00000555022 SALL3Q9BXA9 1300 aa10.45□□□□□ -0.74
SYNE2-217ENST00000555022 CCDC66A2RUB6 948 aa10.45□□□□□ -0.74
SYNE2-217ENST00000555022 LMOD1P29536 600 aaPredicted RBP10.45□□□□□ -0.74
SYNE2-217ENST00000555022 TEX35Q5T0J7 233 aa10.45□□□□□ -0.74
SYNE2-217ENST00000555022 PLEKHA4Q9H4M7 779 aa10.45□□□□□ -0.74
SYNE2-217ENST00000555022 POGZQ7Z3K3 1410 aa10.45□□□□□ -0.74
SYNE2-217ENST00000555022 A0A1B0GVL5 298 aa10.45□□□□□ -0.74
SYNE2-217ENST00000555022 GOLPH3LQ9H4A5 285 aa10.45□□□□□ -0.74
SYNE2-217ENST00000555022 TOMM22Q9NS69 142 aa10.45□□□□□ -0.74
SYNE2-217ENST00000555022 C9orf78Q9NZ63 289 aaPredicted RBP10.45□□□□□ -0.74
SYNE2-217ENST00000555022 CHPF2Q9P2E5 772 aa10.45□□□□□ -0.74
SYNE2-217ENST00000555022 TPM3P06753 285 aa10.44□□□□□ -0.74
SYNE2-217ENST00000555022 CLCN6P51797 869 aa10.44□□□□□ -0.74
SYNE2-217ENST00000555022 TEFQ10587 303 aa10.44□□□□□ -0.74
SYNE2-217ENST00000555022 ZNF589Q86UQ0 364 aaPredicted RBP10.44□□□□□ -0.74
SYNE2-217ENST00000555022 CLSTN2Q9H4D0 955 aa10.44□□□□□ -0.74
SYNE2-217ENST00000555022 IFNKQ9P0W0 207 aa10.44□□□□□ -0.74
SYNE2-217ENST00000555022 SLU7O95391 586 aaKnown RBP10.44□□□□□ -0.74
SYNE2-217ENST00000555022 POLR3DP05423 398 aaPredicted RBP10.44□□□□□ -0.74
SYNE2-217ENST00000555022 GABPB1Q06547 395 aaPredicted RBP10.44□□□□□ -0.74
SYNE2-217ENST00000555022 CCDC30Q5VVM6 783 aa10.44□□□□□ -0.74
SYNE2-217ENST00000555022 FSIP1Q8NA03 581 aa10.44□□□□□ -0.74
SYNE2-217ENST00000555022 MNS1Q8NEH6 495 aa10.44□□□□□ -0.74
SYNE2-217ENST00000555022 PLA2G4DQ86XP0 818 aa10.43□□□□□ -0.74
SYNE2-217ENST00000555022 CLASRPQ8N2M8 674 aaKnown RBP10.43□□□□□ -0.74
SYNE2-217ENST00000555022 RBM33Q96EV2 1170 aaKnown RBP10.43□□□□□ -0.74
SYNE2-217ENST00000555022 RNF216Q9NWF9 866 aaPredicted RBP10.43□□□□□ -0.74
SYNE2-217ENST00000555022 A0A0G2JLW4 131 aa10.43□□□□□ -0.74
SYNE2-217ENST00000555022 PDILTQ8N807 584 aa10.43□□□□□ -0.74
SYNE2-217ENST00000555022 CARD6Q9BX69 1037 aa10.43□□□□□ -0.74
SYNE2-217ENST00000555022 PAXBP1Q9Y5B6 917 aa10.43□□□□□ -0.74
SYNE2-217ENST00000555022 MORC2Q9Y6X9 1032 aaPredicted RBP10.43□□□□□ -0.74
SYNE2-217ENST00000555022 SLC27A2O14975 620 aa10.43□□□□□ -0.74
SYNE2-217ENST00000555022 KINO60870 393 aaKnown RBP10.43□□□□□ -0.74
SYNE2-217ENST00000555022 KRBA2Q6ZNG9 492 aa10.43□□□□□ -0.74
SYNE2-217ENST00000555022 CCDC73Q6ZRK6 1079 aa10.43□□□□□ -0.74
SYNE2-217ENST00000555022 VWDEQ8N2E2 1590 aa10.43□□□□□ -0.74
SYNE2-217ENST00000555022 EFCAB6Q5THR3 1501 aa10.42□□□□□ -0.74
SYNE2-217ENST00000555022 PRAMEF22A3QJZ6 481 aa10.42□□□□□ -0.74
SYNE2-217ENST00000555022 WASLO00401 505 aaPredicted RBP10.42□□□□□ -0.74
SYNE2-217ENST00000555022 PHACTR2O75167 634 aa10.42□□□□□ -0.74
SYNE2-217ENST00000555022 NCBP3Q53F19 620 aaKnown RBP10.42□□□□□ -0.74
SYNE2-217ENST00000555022 KIF1BPQ96EK5 621 aa10.42□□□□□ -0.74
SYNE2-217ENST00000555022 RABEP2Q9H5N1 569 aa10.42□□□□□ -0.74
SYNE2-217ENST00000555022 SF3A1Q15459 793 aaKnown RBP10.42□□□□□ -0.74
SYNE2-217ENST00000555022 LCMT1Q9UIC8 334 aa10.42□□□□□ -0.74
SYNE2-217ENST00000555022 LMAN1P49257 510 aa10.42□□□□□ -0.74
SYNE2-217ENST00000555022 HSP90AB3PQ58FF7 597 aa10.42□□□□□ -0.74
SYNE2-217ENST00000555022 XPO4Q9C0E2 1151 aaKnown RBP10.42□□□□□ -0.74
SYNE2-217ENST00000555022 ERBB3P21860 1342 aa10.41□□□□□ -0.74
SYNE2-217ENST00000555022 RPGRIP1LQ68CZ1 1315 aa10.41□□□□□ -0.74
SYNE2-217ENST00000555022 CCDC171Q6TFL3 1326 aa10.41□□□□□ -0.74
SYNE2-217ENST00000555022 HAP1P54257 671 aaPredicted RBP10.41□□□□□ -0.74
SYNE2-217ENST00000555022 CCZ1BP86790 482 aa10.41□□□□□ -0.74
SYNE2-217ENST00000555022 CCZ1P86791 482 aaPredicted RBP10.41□□□□□ -0.74
SYNE2-217ENST00000555022 PPARDQ03181 441 aa10.41□□□□□ -0.74
SYNE2-217ENST00000555022 Q6ZUG5 572 aa10.41□□□□□ -0.74
SYNE2-217ENST00000555022 GPHNQ9NQX3 736 aaPredicted RBP10.41□□□□□ -0.74
SYNE2-217ENST00000555022 TFRCP02786 760 aaKnown RBP10.41□□□□□ -0.74
SYNE2-217ENST00000555022 ATP1A3P13637 1013 aa10.41□□□□□ -0.74
SYNE2-217ENST00000555022 APOBRQ0VD83 1088 aa10.41□□□□□ -0.74
SYNE2-217ENST00000555022 DPCR1Q3MIW9 517 aa10.41□□□□□ -0.74
SYNE2-217ENST00000555022 TDRD7Q8NHU6 1098 aaKnown RBP10.41□□□□□ -0.74
SYNE2-217ENST00000555022 RUFY2Q8WXA3 655 aa10.41□□□□□ -0.74
SYNE2-217ENST00000555022 UBXN4Q92575 508 aa10.41□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms