RNA–Protein interactions for RNA: ENST00000554997.1

SYNE2-215, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 711 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-215ENST00000554997 MMP10P09238 476 aa12.87□□□□□ -0.35
SYNE2-215ENST00000554997 MVPQ14764 893 aaKnown RBP12.87□□□□□ -0.35
SYNE2-215ENST00000554997 MSL1Q68DK7 614 aa12.87□□□□□ -0.35
SYNE2-215ENST00000554997 ZBTB38Q8NAP3 1195 aaPredicted RBP12.87□□□□□ -0.35
SYNE2-215ENST00000554997 NYXQ9GZU5 481 aa12.87□□□□□ -0.35
SYNE2-215ENST00000554997 C9orf78Q9NZ63 289 aaPredicted RBP12.87□□□□□ -0.35
SYNE2-215ENST00000554997 TRMT112Q9UI30 125 aaKnown RBP12.87□□□□□ -0.35
SYNE2-215ENST00000554997 COG6Q9Y2V7 657 aa12.87□□□□□ -0.35
SYNE2-215ENST00000554997 PARP3Q9Y6F1 533 aa12.87□□□□□ -0.35
SYNE2-215ENST00000554997 QSER1Q2KHR3 1735 aa12.86□□□□□ -0.35
SYNE2-215ENST00000554997 PCCAP05165 728 aaPredicted RBP12.86□□□□□ -0.35
SYNE2-215ENST00000554997 DDR1Q08345 913 aa12.86□□□□□ -0.35
SYNE2-215ENST00000554997 MAPK8IP2Q13387 824 aaPredicted RBP12.86□□□□□ -0.35
SYNE2-215ENST00000554997 SLC10A5Q5PT55 438 aa12.86□□□□□ -0.35
SYNE2-215ENST00000554997 NBPF5PQ86XG9 351 aaPredicted RBP12.86□□□□□ -0.35
SYNE2-215ENST00000554997 ITPRIPQ8IWB1 547 aa12.86□□□□□ -0.35
SYNE2-215ENST00000554997 CHMP4BQ9H444 224 aaKnown RBP12.86□□□□□ -0.35
SYNE2-215ENST00000554997 ATF5Q9Y2D1 282 aaPredicted RBP12.86□□□□□ -0.35
SYNE2-215ENST00000554997 UTYO14607 1347 aa12.86□□□□□ -0.35
SYNE2-215ENST00000554997 PXDNLA1KZ92 1463 aa12.85□□□□□ -0.35
SYNE2-215ENST00000554997 LRP5O75197 1615 aa12.85□□□□□ -0.35
SYNE2-215ENST00000554997 CARMIL3Q8ND23 1372 aa12.85□□□□□ -0.35
SYNE2-215ENST00000554997 FAM177BA6PVY3 158 aa12.85□□□□□ -0.35
SYNE2-215ENST00000554997 GRM8O00222 908 aa12.85□□□□□ -0.35
SYNE2-215ENST00000554997 NTSR2O95665 410 aa12.85□□□□□ -0.35
SYNE2-215ENST00000554997 GTF2E1P29083 439 aaPredicted RBP12.85□□□□□ -0.35
SYNE2-215ENST00000554997 FAM89AQ96GI7 184 aa12.85□□□□□ -0.35
SYNE2-215ENST00000554997 DDX19BQ9UMR2 479 aa12.85□□□□□ -0.35
SYNE2-215ENST00000554997 HDAC5Q9UQL6 1122 aa12.85□□□□□ -0.35
SYNE2-215ENST00000554997 TUBGCP6Q96RT7 1819 aa12.85□□□□□ -0.35
SYNE2-215ENST00000554997 GNAI3P08754 354 aa12.84□□□□□ -0.35
SYNE2-215ENST00000554997 NBPF7P0C2Y1 421 aaPredicted RBP12.84□□□□□ -0.35
SYNE2-215ENST00000554997 HSP90B1P14625 803 aaKnown RBP12.84□□□□□ -0.35
SYNE2-215ENST00000554997 POLD1P28340 1107 aa12.84□□□□□ -0.35
SYNE2-215ENST00000554997 CASP7P55210 303 aa12.84□□□□□ -0.35
SYNE2-215ENST00000554997 SGIP1Q9BQI5 828 aa12.84□□□□□ -0.35
SYNE2-215ENST00000554997 SPON1Q9HCB6 807 aa12.84□□□□□ -0.35
SYNE2-215ENST00000554997 SH3TC1Q8TE82 1336 aa12.84□□□□□ -0.35
SYNE2-215ENST00000554997 CASZ1Q86V15 1759 aa12.84□□□□□ -0.35
SYNE2-215ENST00000554997 C4AP0C0L4 1744 aa12.83□□□□□ -0.36
SYNE2-215ENST00000554997 PTGER2P43116 358 aa12.83□□□□□ -0.36
SYNE2-215ENST00000554997 ERFEQ4G0M1 354 aa12.83□□□□□ -0.36
SYNE2-215ENST00000554997 PRR5LQ6MZQ0 368 aa12.83□□□□□ -0.36
SYNE2-215ENST00000554997 UBE3BQ7Z3V4 1068 aa12.83□□□□□ -0.36
SYNE2-215ENST00000554997 NUTM1Q86Y26 1132 aa12.83□□□□□ -0.36
SYNE2-215ENST00000554997 SYNE4Q8N205 404 aa12.83□□□□□ -0.36
SYNE2-215ENST00000554997 CNBD1Q8NA66 436 aa12.83□□□□□ -0.36
SYNE2-215ENST00000554997 JARID2Q92833 1246 aaPredicted RBP12.83□□□□□ -0.36
SYNE2-215ENST00000554997 CDHR2Q9BYE9 1310 aa12.83□□□□□ -0.36
SYNE2-215ENST00000554997 IRS4O14654 1257 aaPredicted RBP12.82□□□□□ -0.36
SYNE2-215ENST00000554997 UBTFL1P0CB47 393 aaPredicted RBP12.82□□□□□ -0.36
SYNE2-215ENST00000554997 AAMPQ13685 434 aa12.82□□□□□ -0.36
SYNE2-215ENST00000554997 RTL5Q5HYW3 569 aaPredicted RBP12.82□□□□□ -0.36
SYNE2-215ENST00000554997 PPP4R3CPQ6ZMV5 832 aa12.82□□□□□ -0.36
SYNE2-215ENST00000554997 CRBNQ96SW2 442 aa12.82□□□□□ -0.36
SYNE2-215ENST00000554997 MEIS3Q99687 375 aa12.82□□□□□ -0.36
SYNE2-215ENST00000554997 BRIP1Q9BX63 1249 aa12.82□□□□□ -0.36
SYNE2-215ENST00000554997 PLA2G12BQ9BX93 195 aa12.82□□□□□ -0.36
SYNE2-215ENST00000554997 ZBTB40Q9NUA8 1239 aa12.82□□□□□ -0.36
SYNE2-215ENST00000554997 BCORQ6W2J9 1755 aa12.81□□□□□ -0.36
SYNE2-215ENST00000554997 NUP98P52948 1817 aa12.81□□□□□ -0.36
SYNE2-215ENST00000554997 SCN7AQ01118 1682 aa12.81□□□□□ -0.36
SYNE2-215ENST00000554997 NPHP1O15259 732 aa12.81□□□□□ -0.36
SYNE2-215ENST00000554997 PDE8AO60658 829 aa12.81□□□□□ -0.36
SYNE2-215ENST00000554997 ST5P78524 1137 aa12.81□□□□□ -0.36
SYNE2-215ENST00000554997 NLRP3Q96P20 1036 aa12.81□□□□□ -0.36
SYNE2-215ENST00000554997 ARFGEF2Q9Y6D5 1785 aa12.81□□□□□ -0.36
SYNE2-215ENST00000554997 KLRG2A4D1S0 409 aaPredicted RBP12.8□□□□□ -0.36
SYNE2-215ENST00000554997 GNAI2P04899 355 aa12.8□□□□□ -0.36
SYNE2-215ENST00000554997 CSF1RP07333 972 aa12.8□□□□□ -0.36
SYNE2-215ENST00000554997 HCLS1P14317 486 aaPredicted RBP12.8□□□□□ -0.36
SYNE2-215ENST00000554997 FOXO4P98177 505 aa12.8□□□□□ -0.36
SYNE2-215ENST00000554997 KAZALD1Q96I82 304 aa12.8□□□□□ -0.36
SYNE2-215ENST00000554997 PDE6BP35913 854 aa12.79□□□□□ -0.36
SYNE2-215ENST00000554997 SF3B3Q15393 1217 aaKnown RBP12.79□□□□□ -0.36
SYNE2-215ENST00000554997 CCDC24Q8N4L8 307 aa12.79□□□□□ -0.36
SYNE2-215ENST00000554997 EXOC6Q8TAG9 804 aa12.79□□□□□ -0.36
SYNE2-215ENST00000554997 SUCLG2Q96I99 432 aa12.79□□□□□ -0.36
SYNE2-215ENST00000554997 IRX6P78412 446 aaPredicted RBP12.78□□□□□ -0.36
SYNE2-215ENST00000554997 RABL6Q3YEC7 729 aaPredicted RBP12.78□□□□□ -0.36
SYNE2-215ENST00000554997 EPHA10Q5JZY3 1008 aa12.78□□□□□ -0.36
SYNE2-215ENST00000554997 TTLL11Q8NHH1 800 aa12.78□□□□□ -0.36
SYNE2-215ENST00000554997 PDZRN3Q9UPQ7 1066 aa12.78□□□□□ -0.36
SYNE2-215ENST00000554997 LRRFIP2Q9Y608 721 aaKnown RBP12.78□□□□□ -0.36
SYNE2-215ENST00000554997 NEFLP07196 543 aa12.77□□□□□ -0.37
SYNE2-215ENST00000554997 ATP8B2P98198 1209 aa12.77□□□□□ -0.37
SYNE2-215ENST00000554997 LMBR1LQ6UX01 489 aa12.77□□□□□ -0.37
SYNE2-215ENST00000554997 RPAP2Q8IXW5 612 aaPredicted RBP12.77□□□□□ -0.37
SYNE2-215ENST00000554997 ANKRD44Q8N8A2 993 aa12.77□□□□□ -0.37
SYNE2-215ENST00000554997 BICC1Q9H694 974 aaKnown RBP12.77□□□□□ -0.37
SYNE2-215ENST00000554997 CD2APQ9Y5K6 639 aa12.77□□□□□ -0.37
SYNE2-215ENST00000554997 CTSWP56202 376 aa12.76□□□□□ -0.37
SYNE2-215ENST00000554997 TGFB2P61812 414 aa12.76□□□□□ -0.37
SYNE2-215ENST00000554997 MTX1Q13505 466 aa12.76□□□□□ -0.37
SYNE2-215ENST00000554997 CRY2Q49AN0 593 aa12.76□□□□□ -0.37
SYNE2-215ENST00000554997 RIC1Q4ADV7 1423 aa12.76□□□□□ -0.37
SYNE2-215ENST00000554997 H0YIN7 160 aa12.75□□□□□ -0.37
SYNE2-215ENST00000554997 SRGNP10124 158 aa12.75□□□□□ -0.37
SYNE2-215ENST00000554997 HOXA10P31260 410 aaPredicted RBP12.75□□□□□ -0.37
SYNE2-215ENST00000554997 CCDC152Q4G0S7 254 aa12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms