RNA–Protein interactions for RNA: ENST00000554437.5

SCFD1-211, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 688 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-211ENST00000554437 SFSWAPQ12872 951 aaKnown RBP9.27□□□□□ -0.93
SCFD1-211ENST00000554437 LAMC2Q13753 1193 aa9.27□□□□□ -0.93
SCFD1-211ENST00000554437 GAS6Q14393 721 aa9.27□□□□□ -0.93
SCFD1-211ENST00000554437 GLYCTKQ8IVS8 523 aa9.27□□□□□ -0.93
SCFD1-211ENST00000554437 TUT1Q9H6E5 874 aaKnown RBP9.27□□□□□ -0.93
SCFD1-211ENST00000554437 MARK1Q9P0L2 795 aa9.27□□□□□ -0.93
SCFD1-211ENST00000554437 OPLAHO14841 1288 aa9.26□□□□□ -0.93
SCFD1-211ENST00000554437 FAM13AO94988 1023 aa9.26□□□□□ -0.93
SCFD1-211ENST00000554437 EPB42P16452 691 aa9.26□□□□□ -0.93
SCFD1-211ENST00000554437 CD33P20138 364 aa9.26□□□□□ -0.93
SCFD1-211ENST00000554437 MX2P20592 715 aa9.26□□□□□ -0.93
SCFD1-211ENST00000554437 INPP5BP32019 993 aa9.26□□□□□ -0.93
SCFD1-211ENST00000554437 ZAP70P43403 619 aa9.26□□□□□ -0.93
SCFD1-211ENST00000554437 AAMPQ13685 434 aa9.26□□□□□ -0.93
SCFD1-211ENST00000554437 NOM1Q5C9Z4 860 aaKnown RBP9.26□□□□□ -0.93
SCFD1-211ENST00000554437 RNFT1Q5M7Z0 435 aa9.26□□□□□ -0.93
SCFD1-211ENST00000554437 STRN4Q9NRL3 753 aa9.26□□□□□ -0.93
SCFD1-211ENST00000554437 KCNH4Q9UQ05 1017 aa9.26□□□□□ -0.93
SCFD1-211ENST00000554437 EIF1AXP47813 144 aaKnown RBP9.25□□□□□ -0.93
SCFD1-211ENST00000554437 CTBSQ01459 385 aa9.25□□□□□ -0.93
SCFD1-211ENST00000554437 RGL4Q8IZJ4 473 aa9.25□□□□□ -0.93
SCFD1-211ENST00000554437 CNTNAP3BQ96NU0 1288 aa9.25□□□□□ -0.93
SCFD1-211ENST00000554437 CNTNAP3Q9BZ76 1288 aa9.25□□□□□ -0.93
SCFD1-211ENST00000554437 HCN2Q9UL51 889 aa9.25□□□□□ -0.93
SCFD1-211ENST00000554437 SOWAHDA6NJG2 315 aa9.24□□□□□ -0.93
SCFD1-211ENST00000554437 NPR3P17342 541 aa9.24□□□□□ -0.93
SCFD1-211ENST00000554437 GSK3AP49840 483 aa9.24□□□□□ -0.93
SCFD1-211ENST00000554437 ALKBH2Q6NS38 261 aa9.24□□□□□ -0.93
SCFD1-211ENST00000554437 ATCAYQ86WG3 371 aa9.24□□□□□ -0.93
SCFD1-211ENST00000554437 MBIPQ9NS73 344 aa9.24□□□□□ -0.93
SCFD1-211ENST00000554437 FAM13BQ9NYF5 915 aa9.24□□□□□ -0.93
SCFD1-211ENST00000554437 NSFL1CQ9UNZ2 370 aaKnown RBP9.24□□□□□ -0.93
SCFD1-211ENST00000554437 USP20Q9Y2K6 914 aa9.24□□□□□ -0.93
SCFD1-211ENST00000554437 RTCBQ9Y3I0 505 aaKnown RBP9.24□□□□□ -0.93
SCFD1-211ENST00000554437 BMP4P12644 408 aa9.23□□□□□ -0.93
SCFD1-211ENST00000554437 KCNQ4P56696 695 aa9.23□□□□□ -0.93
SCFD1-211ENST00000554437 KRT76Q01546 638 aa9.23□□□□□ -0.93
SCFD1-211ENST00000554437 CMTR1Q8N1G2 835 aaKnown RBP9.23□□□□□ -0.93
SCFD1-211ENST00000554437 GPR152Q8TDT2 470 aa9.23□□□□□ -0.93
SCFD1-211ENST00000554437 KCNMA1Q12791 1236 aa9.22□□□□□ -0.93
SCFD1-211ENST00000554437 GRIN2CQ14957 1233 aa9.22□□□□□ -0.93
SCFD1-211ENST00000554437 FAM182BQ5T319 152 aa9.22□□□□□ -0.93
SCFD1-211ENST00000554437 PIK3R5Q8WYR1 880 aa9.22□□□□□ -0.93
SCFD1-211ENST00000554437 BIN2Q9UBW5 565 aaPredicted RBP9.22□□□□□ -0.93
SCFD1-211ENST00000554437 DNM1Q05193 864 aaKnown RBP9.21□□□□□ -0.94
SCFD1-211ENST00000554437 PRR12Q9ULL5 1215 aa9.21□□□□□ -0.94
SCFD1-211ENST00000554437 C2CD2LO14523 706 aa9.2□□□□□ -0.94
SCFD1-211ENST00000554437 GRNP28799 593 aaKnown RBP9.2□□□□□ -0.94
SCFD1-211ENST00000554437 MAP2K3P46734 347 aa9.2□□□□□ -0.94
SCFD1-211ENST00000554437 SPEM2Q0P670 501 aa9.2□□□□□ -0.94
SCFD1-211ENST00000554437 EDEM1Q92611 657 aa9.2□□□□□ -0.94
SCFD1-211ENST00000554437 SLC30A3Q99726 388 aa9.2□□□□□ -0.94
SCFD1-211ENST00000554437 IGF1RP08069 1367 aa9.2□□□□□ -0.94
SCFD1-211ENST00000554437 SRSF11Q05519 484 aaKnown RBP9.19□□□□□ -0.94
SCFD1-211ENST00000554437 ECM1Q16610 540 aa9.19□□□□□ -0.94
SCFD1-211ENST00000554437 ZBTB7CA1YPR0 619 aa9.18□□□□□ -0.94
SCFD1-211ENST00000554437 PCSK2P16519 638 aa9.18□□□□□ -0.94
SCFD1-211ENST00000554437 MZF1P28698 734 aaPredicted RBP9.18□□□□□ -0.94
SCFD1-211ENST00000554437 ARHGAP4P98171 946 aa9.18□□□□□ -0.94
SCFD1-211ENST00000554437 CCINQ13939 588 aa9.18□□□□□ -0.94
SCFD1-211ENST00000554437 RAB44Q7Z6P3 723 aaPredicted RBP9.18□□□□□ -0.94
SCFD1-211ENST00000554437 NUDT16Q96DE0 195 aaKnown RBP9.18□□□□□ -0.94
SCFD1-211ENST00000554437 PNMA5Q96PV4 448 aa9.18□□□□□ -0.94
SCFD1-211ENST00000554437 XYLBO75191 536 aa9.17□□□□□ -0.94
SCFD1-211ENST00000554437 ADAMTS2O95450 1211 aa9.17□□□□□ -0.94
SCFD1-211ENST00000554437 NEUROD1Q13562 356 aa9.17□□□□□ -0.94
SCFD1-211ENST00000554437 TTC16Q8NEE8 873 aa9.17□□□□□ -0.94
SCFD1-211ENST00000554437 BHMTQ93088 406 aa9.17□□□□□ -0.94
SCFD1-211ENST00000554437 GSX2Q9BZM3 304 aa9.17□□□□□ -0.94
SCFD1-211ENST00000554437 C11orf16Q9NQ32 467 aa9.17□□□□□ -0.94
SCFD1-211ENST00000554437 CCDC87Q9NVE4 849 aa9.17□□□□□ -0.94
SCFD1-211ENST00000554437 BRPF3Q9ULD4 1205 aa9.17□□□□□ -0.94
SCFD1-211ENST00000554437 POLIQ9UNA4 740 aa9.17□□□□□ -0.94
SCFD1-211ENST00000554437 FNDC3AQ9Y2H6 1198 aaKnown RBP9.17□□□□□ -0.94
SCFD1-211ENST00000554437 KCNMB2Q9Y691 235 aa9.17□□□□□ -0.94
SCFD1-211ENST00000554437 UBAP1LF5GYI3 381 aa9.16□□□□□ -0.94
SCFD1-211ENST00000554437 FZD6O60353 706 aa9.16□□□□□ -0.94
SCFD1-211ENST00000554437 PDGFAP04085 211 aa9.16□□□□□ -0.94
SCFD1-211ENST00000554437 KRT25Q7Z3Z0 450 aa9.16□□□□□ -0.94
SCFD1-211ENST00000554437 GZF1Q9H116 711 aaPredicted RBP9.16□□□□□ -0.94
SCFD1-211ENST00000554437 SASH3O75995 380 aa9.15□□□□□ -0.94
SCFD1-211ENST00000554437 RPLP1P05386 114 aaKnown RBP9.15□□□□□ -0.94
SCFD1-211ENST00000554437 PCBP4P57723 403 aaKnown RBP9.15□□□□□ -0.94
SCFD1-211ENST00000554437 TRIP4Q15650 581 aaPredicted RBP9.15□□□□□ -0.94
SCFD1-211ENST00000554437 C8orf34Q49A92 452 aa9.15□□□□□ -0.94
SCFD1-211ENST00000554437 SYT9Q86SS6 491 aa9.15□□□□□ -0.94
SCFD1-211ENST00000554437 GTF3C5Q9Y5Q8 519 aaPredicted RBP9.15□□□□□ -0.94
SCFD1-211ENST00000554437 NDUFB5O43674 189 aa9.14□□□□□ -0.95
SCFD1-211ENST00000554437 EGFRP00533 1210 aa9.14□□□□□ -0.95
SCFD1-211ENST00000554437 ARAFP10398 606 aa9.14□□□□□ -0.95
SCFD1-211ENST00000554437 NFKB1P19838 968 aa9.14□□□□□ -0.95
SCFD1-211ENST00000554437 TARSP26639 723 aaKnown RBP9.14□□□□□ -0.95
SCFD1-211ENST00000554437 USP5P45974 858 aa9.14□□□□□ -0.95
SCFD1-211ENST00000554437 ZNF468Q5VIY5 522 aaPredicted RBP9.14□□□□□ -0.95
SCFD1-211ENST00000554437 OXCT2Q9BYC2 517 aaPredicted RBP9.14□□□□□ -0.95
SCFD1-211ENST00000554437 EFCC1Q9HA90 598 aa9.14□□□□□ -0.95
SCFD1-211ENST00000554437 SLURP2P0DP57 97 aa9.13□□□□□ -0.95
SCFD1-211ENST00000554437 SND1Q7KZF4 910 aaKnown RBP eCLIP9.13□□□□□ -0.95
SCFD1-211ENST00000554437 GGNBP2Q9H3C7 697 aa9.13□□□□□ -0.95
SCFD1-211ENST00000554437 AVENQ9NQS1 362 aaPredicted RBP9.13□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 67.3 ms