RNA–Protein interactions for RNA: ENST00000554270.5

PTPN21-205, Transcript of protein tyrosine phosphatase, non-receptor type 21, human

TSL 1 (best)

Gene PTPN21, Length 4,008 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN21-205	ENST00000554270	SF3A1	Q15459	793 aa	Known RBP	13.59	□□□□□ -0.23
PTPN21-205	ENST00000554270	DACT1	Q9NYF0	836 aa		13.59	□□□□□ -0.23
PTPN21-205	ENST00000554270	CHST3	Q7LGC8	479 aa		13.58	□□□□□ -0.24
PTPN21-205	ENST00000554270	INTS4	Q96HW7	963 aa	Known RBP	13.58	□□□□□ -0.24
PTPN21-205	ENST00000554270	OVOS2	A0A0J9YW53	1432 aa		13.58	□□□□□ -0.24
PTPN21-205	ENST00000554270	OVOS2	Q6IE36	1432 aa		13.58	□□□□□ -0.24
PTPN21-205	ENST00000554270	CEP170B	Q9Y4F5	1589 aa	Predicted RBP	13.58	□□□□□ -0.24
PTPN21-205	ENST00000554270	ADAMTS13	Q76LX8	1427 aa		13.58	□□□□□ -0.24
PTPN21-205	ENST00000554270	PTPRU	Q92729	1446 aa		13.58	□□□□□ -0.24
PTPN21-205	ENST00000554270	KIF20B	Q96Q89	1820 aa		13.58	□□□□□ -0.24
PTPN21-205	ENST00000554270		A0A087WWV3	80 aa		13.58	□□□□□ -0.24
PTPN21-205	ENST00000554270	SLFNL1	Q499Z3	407 aa		13.58	□□□□□ -0.24
PTPN21-205	ENST00000554270	AKAP4	Q5JQC9	854 aa		13.58	□□□□□ -0.24
PTPN21-205	ENST00000554270	ERCC4	Q92889	916 aa	Predicted RBP	13.58	□□□□□ -0.24
PTPN21-205	ENST00000554270	MAP3K11	Q16584	847 aa		13.57	□□□□□ -0.24
PTPN21-205	ENST00000554270	SEC62	Q99442	399 aa	Known RBP	13.57	□□□□□ -0.24
PTPN21-205	ENST00000554270	LSG1	Q9H089	658 aa	Known RBP	13.57	□□□□□ -0.24
PTPN21-205	ENST00000554270	CDC42BPG	Q6DT37	1551 aa		13.57	□□□□□ -0.24
PTPN21-205	ENST00000554270	AEBP2	Q6ZN18	517 aa	Predicted RBP	13.57	□□□□□ -0.24
PTPN21-205	ENST00000554270	KCNH5	Q8NCM2	988 aa		13.57	□□□□□ -0.24
PTPN21-205	ENST00000554270	SNRK	Q9NRH2	765 aa		13.57	□□□□□ -0.24
PTPN21-205	ENST00000554270	STAP2	Q9UGK3	403 aa		13.57	□□□□□ -0.24
PTPN21-205	ENST00000554270		A0A087WZG4	1122 aa		13.57	□□□□□ -0.24
PTPN21-205	ENST00000554270	PTGS1	P23219	599 aa		13.57	□□□□□ -0.24
PTPN21-205	ENST00000554270	ME3	Q16798	604 aa		13.57	□□□□□ -0.24
PTPN21-205	ENST00000554270	CREB3L3	Q68CJ9	461 aa		13.57	□□□□□ -0.24
PTPN21-205	ENST00000554270	KRT28	Q7Z3Y7	464 aa		13.57	□□□□□ -0.24
PTPN21-205	ENST00000554270	CHMP4A	Q9BY43	222 aa		13.57	□□□□□ -0.24
PTPN21-205	ENST00000554270		A0A0D9SFI3	127 aa		13.56	□□□□□ -0.24
PTPN21-205	ENST00000554270	PSMA5	P28066	241 aa		13.56	□□□□□ -0.24
PTPN21-205	ENST00000554270	TPD52L1	Q16890	204 aa	Predicted RBP	13.56	□□□□□ -0.24
PTPN21-205	ENST00000554270	CDC37L1	Q7L3B6	337 aa		13.56	□□□□□ -0.24
PTPN21-205	ENST00000554270	KIF3A	Q9Y496	699 aa		13.56	□□□□□ -0.24
PTPN21-205	ENST00000554270	GIGYF1	O75420	1035 aa	Predicted RBP	13.56	□□□□□ -0.24
PTPN21-205	ENST00000554270	COL9A3	Q14050	684 aa	Predicted RBP	13.56	□□□□□ -0.24
PTPN21-205	ENST00000554270	CCDC186	Q7Z3E2	898 aa		13.56	□□□□□ -0.24
PTPN21-205	ENST00000554270	ERC1	Q8IUD2	1116 aa		13.56	□□□□□ -0.24
PTPN21-205	ENST00000554270	ZBTB3	Q9H5J0	574 aa		13.56	□□□□□ -0.24
PTPN21-205	ENST00000554270	AXIN2	Q9Y2T1	843 aa		13.56	□□□□□ -0.24
PTPN21-205	ENST00000554270	TNFRSF11A	Q9Y6Q6	616 aa	Predicted RBP	13.56	□□□□□ -0.24
PTPN21-205	ENST00000554270	RICTOR	Q6R327	1708 aa		13.56	□□□□□ -0.24
PTPN21-205	ENST00000554270	CUL4A	Q13619	759 aa		13.56	□□□□□ -0.24
PTPN21-205	ENST00000554270	EVI5L	Q96CN4	794 aa		13.56	□□□□□ -0.24
PTPN21-205	ENST00000554270	HDAC5	Q9UQL6	1122 aa		13.56	□□□□□ -0.24
PTPN21-205	ENST00000554270	DLC1	Q96QB1	1528 aa		13.56	□□□□□ -0.24
PTPN21-205	ENST00000554270	TRMT1	Q9NXH9	659 aa	Known RBP	13.55	□□□□□ -0.24
PTPN21-205	ENST00000554270	FKBP4	Q02790	459 aa	Known RBP eCLIP	13.55	□□□□□ -0.24
PTPN21-205	ENST00000554270	ANO6	Q4KMQ2	910 aa		13.55	□□□□□ -0.24
PTPN21-205	ENST00000554270	HSP90AB3P	Q58FF7	597 aa		13.55	□□□□□ -0.24
PTPN21-205	ENST00000554270	TAF7L	Q5H9L4	462 aa		13.55	□□□□□ -0.24
PTPN21-205	ENST00000554270	USP16	Q9Y5T5	823 aa		13.55	□□□□□ -0.24
PTPN21-205	ENST00000554270	TAF6L	Q9Y6J9	622 aa		13.55	□□□□□ -0.24
PTPN21-205	ENST00000554270	PLEKHG1	Q9ULL1	1385 aa		13.55	□□□□□ -0.24
PTPN21-205	ENST00000554270	TAT	P17735	454 aa	Predicted RBP	13.55	□□□□□ -0.24
PTPN21-205	ENST00000554270	LIG1	P18858	919 aa		13.55	□□□□□ -0.24
PTPN21-205	ENST00000554270	DNAJC25	Q9H1X3	360 aa		13.55	□□□□□ -0.24
PTPN21-205	ENST00000554270	PPP4R3B	Q5MIZ7	849 aa		13.55	□□□□□ -0.24
PTPN21-205	ENST00000554270	LARP1	Q6PKG0	1096 aa	Known RBP	13.55	□□□□□ -0.24
PTPN21-205	ENST00000554270	SDF4	Q9BRK5	362 aa		13.55	□□□□□ -0.24
PTPN21-205	ENST00000554270	NOL12	Q9UGY1	213 aa	Known RBP eCLIP	13.55	□□□□□ -0.24
PTPN21-205	ENST00000554270		V9GYY5	206 aa	Predicted RBP	13.55	□□□□□ -0.24
PTPN21-205	ENST00000554270	JAK2	O60674	1132 aa		13.54	□□□□□ -0.24
PTPN21-205	ENST00000554270	LETM1	O95202	739 aa	Predicted RBP	13.54	□□□□□ -0.24
PTPN21-205	ENST00000554270	GNL2	Q13823	731 aa	Known RBP	13.54	□□□□□ -0.24
PTPN21-205	ENST00000554270	WASHC4	Q2M389	1173 aa		13.54	□□□□□ -0.24
PTPN21-205	ENST00000554270	ISM2	Q6H9L7	571 aa		13.54	□□□□□ -0.24
PTPN21-205	ENST00000554270	CLEC17A	Q6ZS10	378 aa		13.54	□□□□□ -0.24
PTPN21-205	ENST00000554270	TPCN1	Q9ULQ1	816 aa		13.54	□□□□□ -0.24
PTPN21-205	ENST00000554270	CCDC171	Q6TFL3	1326 aa		13.54	□□□□□ -0.24
PTPN21-205	ENST00000554270	GOLIM4	O00461	696 aa		13.54	□□□□□ -0.24
PTPN21-205	ENST00000554270	CABP4	P57796	275 aa		13.54	□□□□□ -0.24
PTPN21-205	ENST00000554270	TFCP2	Q12800	502 aa		13.54	□□□□□ -0.24
PTPN21-205	ENST00000554270	HS1BP3	Q53T59	392 aa		13.54	□□□□□ -0.24
PTPN21-205	ENST00000554270	LINS1	Q8NG48	757 aa		13.54	□□□□□ -0.24
PTPN21-205	ENST00000554270	ZNF496	Q96IT1	587 aa	Predicted RBP	13.54	□□□□□ -0.24
PTPN21-205	ENST00000554270	STRN4	Q9NRL3	753 aa		13.54	□□□□□ -0.24
PTPN21-205	ENST00000554270	EIF2AK3	Q9NZJ5	1116 aa	Known RBP	13.54	□□□□□ -0.24
PTPN21-205	ENST00000554270	ZNF500	O60304	480 aa	Predicted RBP	13.54	□□□□□ -0.24
PTPN21-205	ENST00000554270	ME1	P48163	572 aa		13.54	□□□□□ -0.24
PTPN21-205	ENST00000554270	LRMP	Q12912	555 aa		13.54	□□□□□ -0.24
PTPN21-205	ENST00000554270	AMOT	Q4VCS5	1084 aa		13.54	□□□□□ -0.24
PTPN21-205	ENST00000554270	BRF1	Q92994	677 aa		13.54	□□□□□ -0.24
PTPN21-205	ENST00000554270	HYPK	Q9NX55	129 aa		13.54	□□□□□ -0.24
PTPN21-205	ENST00000554270	TIMM10	P62072	90 aa		13.53	□□□□□ -0.24
PTPN21-205	ENST00000554270	ANKRD13D	Q6ZTN6	518 aa		13.53	□□□□□ -0.24
PTPN21-205	ENST00000554270	RIMS1	Q86UR5	1692 aa	Known RBP	13.53	□□□□□ -0.24
PTPN21-205	ENST00000554270	KAT6B	Q8WYB5	2073 aa		13.53	□□□□□ -0.24
PTPN21-205	ENST00000554270	SASH1	O94885	1247 aa		13.53	□□□□□ -0.24
PTPN21-205	ENST00000554270	PDC	P20941	246 aa		13.53	□□□□□ -0.24
PTPN21-205	ENST00000554270	HAND2	P61296	217 aa		13.53	□□□□□ -0.24
PTPN21-205	ENST00000554270	ZNF589	Q86UQ0	364 aa	Predicted RBP	13.53	□□□□□ -0.24
PTPN21-205	ENST00000554270	ZSCAN31	Q96LW9	406 aa	Predicted RBP	13.53	□□□□□ -0.24
PTPN21-205	ENST00000554270	USP31	Q70CQ4	1352 aa		13.53	□□□□□ -0.24
PTPN21-205	ENST00000554270	ZBTB9	Q96C00	473 aa		13.53	□□□□□ -0.24
PTPN21-205	ENST00000554270	PDLIM2	Q96JY6	352 aa		13.53	□□□□□ -0.24
PTPN21-205	ENST00000554270	DYNC1I1	O14576	645 aa		13.52	□□□□□ -0.24
PTPN21-205	ENST00000554270	ZNF165	P49910	485 aa		13.52	□□□□□ -0.24
PTPN21-205	ENST00000554270	EPHA10	Q5JZY3	1008 aa		13.52	□□□□□ -0.24
PTPN21-205	ENST00000554270	LMBR1L	Q6UX01	489 aa		13.52	□□□□□ -0.24
PTPN21-205	ENST00000554270	MAP7D2	Q96T17	732 aa		13.52	□□□□□ -0.24

Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms