RNA–Protein interactions for RNA: ENST00000553308.1

SYNE2-209, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 4

Gene SYNE2, Length 557 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-209ENST00000553308 GJA3Q9Y6H8 435 aa12.11□□□□□ -0.47
SYNE2-209ENST00000553308 NUP98P52948 1817 aa12.11□□□□□ -0.47
SYNE2-209ENST00000553308 WDR33Q9C0J8 1336 aaKnown RBP12.11□□□□□ -0.47
SYNE2-209ENST00000553308 PPP2R1AP30153 589 aa12.1□□□□□ -0.47
SYNE2-209ENST00000553308 TAF7Q15545 349 aaPredicted RBP12.1□□□□□ -0.47
SYNE2-209ENST00000553308 RPGRQ92834 1020 aaKnown RBP12.1□□□□□ -0.47
SYNE2-209ENST00000553308 NYXQ9GZU5 481 aa12.1□□□□□ -0.47
SYNE2-209ENST00000553308 DDX21Q9NR30 783 aaKnown RBP eCLIP12.1□□□□□ -0.47
SYNE2-209ENST00000553308 RIC1Q4ADV7 1423 aa12.1□□□□□ -0.47
SYNE2-209ENST00000553308 MAP3K15Q6ZN16 1313 aa12.1□□□□□ -0.47
SYNE2-209ENST00000553308 UBN2Q6ZU65 1347 aa12.1□□□□□ -0.47
SYNE2-209ENST00000553308 HTATSF1O43719 755 aaKnown RBP12.09□□□□□ -0.47
SYNE2-209ENST00000553308 GPTP24298 496 aa12.09□□□□□ -0.47
SYNE2-209ENST00000553308 LMOD1P29536 600 aaPredicted RBP12.09□□□□□ -0.47
SYNE2-209ENST00000553308 EPS15P42566 896 aa12.09□□□□□ -0.47
SYNE2-209ENST00000553308 SCNN1DP51172 638 aa12.09□□□□□ -0.47
SYNE2-209ENST00000553308 EIF6P56537 245 aaKnown RBP12.09□□□□□ -0.47
SYNE2-209ENST00000553308 TTLL7Q6ZT98 887 aa12.09□□□□□ -0.47
SYNE2-209ENST00000553308 DLG5Q8TDM6 1919 aa12.09□□□□□ -0.47
SYNE2-209ENST00000553308 IBTKQ9P2D0 1353 aaPredicted RBP12.08□□□□□ -0.48
SYNE2-209ENST00000553308 ERVV-1B6SEH8 477 aa12.08□□□□□ -0.48
SYNE2-209ENST00000553308 TCERG1O14776 1098 aaKnown RBP12.08□□□□□ -0.48
SYNE2-209ENST00000553308 HOXA10P31260 410 aaPredicted RBP12.08□□□□□ -0.48
SYNE2-209ENST00000553308 MAP2K1Q02750 393 aaPredicted RBP12.08□□□□□ -0.48
SYNE2-209ENST00000553308 CC2D2BQ6DHV5 1058 aa12.08□□□□□ -0.48
SYNE2-209ENST00000553308 LARGE2Q8N3Y3 721 aa12.08□□□□□ -0.48
SYNE2-209ENST00000553308 ABHD8Q96I13 439 aa12.08□□□□□ -0.48
SYNE2-209ENST00000553308 ZBTB3Q9H5J0 574 aa12.08□□□□□ -0.48
SYNE2-209ENST00000553308 RRP7AQ9Y3A4 280 aaKnown RBP12.08□□□□□ -0.48
SYNE2-209ENST00000553308 TRAF5O00463 557 aa12.07□□□□□ -0.48
SYNE2-209ENST00000553308 PPEF1O14829 653 aaPredicted RBP12.07□□□□□ -0.48
SYNE2-209ENST00000553308 MYL6BP14649 208 aa12.07□□□□□ -0.48
SYNE2-209ENST00000553308 GRM1Q13255 1194 aa12.07□□□□□ -0.48
SYNE2-209ENST00000553308 SUSD4Q5VX71 490 aa12.07□□□□□ -0.48
SYNE2-209ENST00000553308 KIF6Q6ZMV9 814 aa12.07□□□□□ -0.48
SYNE2-209ENST00000553308 C3orf67Q6ZVT6 689 aa12.07□□□□□ -0.48
SYNE2-209ENST00000553308 PAXIP1Q6ZW49 1069 aaPredicted RBP12.07□□□□□ -0.48
SYNE2-209ENST00000553308 CAPNS2Q96L46 248 aa12.07□□□□□ -0.48
SYNE2-209ENST00000553308 NTSR2O95665 410 aa12.06□□□□□ -0.48
SYNE2-209ENST00000553308 EIF4A1P60842 406 aaKnown RBP12.06□□□□□ -0.48
SYNE2-209ENST00000553308 CYP4F22Q6NT55 531 aa12.06□□□□□ -0.48
SYNE2-209ENST00000553308 NIM1KQ8IY84 436 aa12.06□□□□□ -0.48
SYNE2-209ENST00000553308 THUMPD2Q9BTF0 503 aaKnown RBP12.06□□□□□ -0.48
SYNE2-209ENST00000553308 TRPM7Q96QT4 1865 aa12.06□□□□□ -0.48
SYNE2-209ENST00000553308 PPIP5K2O43314 1243 aa12.05□□□□□ -0.48
SYNE2-209ENST00000553308 AOC3Q16853 763 aa12.05□□□□□ -0.48
SYNE2-209ENST00000553308 FAM161AQ3B820 660 aa12.05□□□□□ -0.48
SYNE2-209ENST00000553308 CST9Q5W186 159 aa12.05□□□□□ -0.48
SYNE2-209ENST00000553308 USP50Q70EL3 339 aaPredicted RBP12.05□□□□□ -0.48
SYNE2-209ENST00000553308 ZNF34Q8IZ26 560 aa12.05□□□□□ -0.48
SYNE2-209ENST00000553308 PNISRQ8TF01 805 aaKnown RBP12.05□□□□□ -0.48
SYNE2-209ENST00000553308 RBM17Q96I25 401 aaKnown RBP12.05□□□□□ -0.48
SYNE2-209ENST00000553308 CRAMP1Q96RY5 1269 aa12.05□□□□□ -0.48
SYNE2-209ENST00000553308 ECE1P42892 770 aa12.04□□□□□ -0.48
SYNE2-209ENST00000553308 GRIPAP1Q4V328 841 aa12.04□□□□□ -0.48
SYNE2-209ENST00000553308 GIGYF2Q6Y7W6 1299 aaKnown RBP12.04□□□□□ -0.48
SYNE2-209ENST00000553308 GPR101Q96P66 508 aaPredicted RBP12.04□□□□□ -0.48
SYNE2-209ENST00000553308 TSKSQ9UJT2 592 aa12.04□□□□□ -0.48
SYNE2-209ENST00000553308 TLL2Q9Y6L7 1015 aa12.04□□□□□ -0.48
SYNE2-209ENST00000553308 BEGAINQ9BUH8 593 aa12.03□□□□□ -0.48
SYNE2-209ENST00000553308 GPRC5DQ9NZD1 345 aa12.03□□□□□ -0.48
SYNE2-209ENST00000553308 LAMB2P55268 1798 aa12.02□□□□□ -0.48
SYNE2-209ENST00000553308 AOC2O75106 756 aa12.02□□□□□ -0.49
SYNE2-209ENST00000553308 NEFMP07197 916 aa12.02□□□□□ -0.49
SYNE2-209ENST00000553308 CXCL9Q07325 125 aa12.02□□□□□ -0.49
SYNE2-209ENST00000553308 PPP1R42Q7Z4L9 355 aa12.02□□□□□ -0.49
SYNE2-209ENST00000553308 PLEKHF1Q96S99 279 aa12.02□□□□□ -0.49
SYNE2-209ENST00000553308 ADARB2Q9NS39 739 aaKnown RBP12.02□□□□□ -0.49
SYNE2-209ENST00000553308 ATP6V0A2Q9Y487 856 aa12.02□□□□□ -0.49
SYNE2-209ENST00000553308 ABCC4O15439 1325 aa12.02□□□□□ -0.49
SYNE2-209ENST00000553308 CELF2O95319 508 aaKnown RBP12.01□□□□□ -0.49
SYNE2-209ENST00000553308 GMPSP49915 693 aaPredicted RBP12.01□□□□□ -0.49
SYNE2-209ENST00000553308 NFE2L2Q16236 605 aa12.01□□□□□ -0.49
SYNE2-209ENST00000553308 PARP10Q53GL7 1025 aa12.01□□□□□ -0.49
SYNE2-209ENST00000553308 LRP10Q7Z4F1 713 aa12.01□□□□□ -0.49
SYNE2-209ENST00000553308 NLRP3Q96P20 1036 aa12.01□□□□□ -0.49
SYNE2-209ENST00000553308 GLIS2Q9BZE0 524 aaPredicted RBP12.01□□□□□ -0.49
SYNE2-209ENST00000553308 ZNRF3Q9ULT6 936 aa12.01□□□□□ -0.49
SYNE2-209ENST00000553308 ERBB4Q15303 1308 aa12.01□□□□□ -0.49
SYNE2-209ENST00000553308 CCDC85CA6NKD9 419 aa12□□□□□ -0.49
SYNE2-209ENST00000553308 SLC34A2O95436 690 aa12□□□□□ -0.49
SYNE2-209ENST00000553308 ANXA1P04083 346 aa12□□□□□ -0.49
SYNE2-209ENST00000553308 PROSER3Q2NL68 480 aa12□□□□□ -0.49
SYNE2-209ENST00000553308 SAPCD2Q86UD0 394 aa12□□□□□ -0.49
SYNE2-209ENST00000553308 UTP14AQ9BVJ6 771 aaKnown RBP12□□□□□ -0.49
SYNE2-209ENST00000553308 RTFDC1Q9BY42 306 aaPredicted RBP12□□□□□ -0.49
SYNE2-209ENST00000553308 TMX4Q9H1E5 349 aaPredicted RBP12□□□□□ -0.49
SYNE2-209ENST00000553308 ANKRD36CQ5JPF3 1778 aa12□□□□□ -0.49
SYNE2-209ENST00000553308 MAP2K2P36507 400 aa11.99□□□□□ -0.49
SYNE2-209ENST00000553308 PDIA6Q15084 440 aa11.99□□□□□ -0.49
SYNE2-209ENST00000553308 SLC10A5Q5PT55 438 aa11.99□□□□□ -0.49
SYNE2-209ENST00000553308 DPP8Q6V1X1 898 aaPredicted RBP11.99□□□□□ -0.49
SYNE2-209ENST00000553308 SUPT20HQ8NEM7 779 aa11.99□□□□□ -0.49
SYNE2-209ENST00000553308 VPS33BQ9H267 617 aa11.99□□□□□ -0.49
SYNE2-209ENST00000553308 ZNF408Q9H9D4 720 aa11.99□□□□□ -0.49
SYNE2-209ENST00000553308 TSPYL4Q9UJ04 414 aa11.99□□□□□ -0.49
SYNE2-209ENST00000553308 DUOX1Q9NRD9 1551 aa11.99□□□□□ -0.49
SYNE2-209ENST00000553308 SHTN1A0MZ66 631 aa11.98□□□□□ -0.49
SYNE2-209ENST00000553308 RAD17O75943 681 aa11.98□□□□□ -0.49
SYNE2-209ENST00000553308 HCLS1P14317 486 aaPredicted RBP11.98□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms