RNA–Protein interactions for RNA: ENST00000553256.5

PTCH1-227, Transcript of patched 1, humanhuman

TSL 4

Gene PTCH1, Length 537 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-227ENST00000553256 HOXA10P31260 410 aaPredicted RBP24.94■■□□□ 1.58
PTCH1-227ENST00000553256 TRIM28Q13263 835 aaKnown RBP24.94■■□□□ 1.58
PTCH1-227ENST00000553256 PRPF40BQ6NWY9 871 aaKnown RBP24.94■■□□□ 1.58
PTCH1-227ENST00000553256 RNF123Q5XPI4 1314 aa24.93■■□□□ 1.58
PTCH1-227ENST00000553256 TWISTNBQ3B726 338 aaPredicted RBP24.93■■□□□ 1.58
PTCH1-227ENST00000553256 PPP1R42Q7Z4L9 355 aa24.93■■□□□ 1.58
PTCH1-227ENST00000553256 FER1L6Q2WGJ9 1857 aa24.93■■□□□ 1.58
PTCH1-227ENST00000553256 NPHP1O15259 732 aa24.92■■□□□ 1.58
PTCH1-227ENST00000553256 C21orf2O43822 256 aa24.92■■□□□ 1.58
PTCH1-227ENST00000553256 VAMP4O75379 141 aa24.92■■□□□ 1.58
PTCH1-227ENST00000553256 RASSF7Q02833 373 aa24.92■■□□□ 1.58
PTCH1-227ENST00000553256 CCDC30Q5VVM6 783 aa24.92■■□□□ 1.58
PTCH1-227ENST00000553256 C9orf131Q5VYM1 1079 aa24.92■■□□□ 1.58
PTCH1-227ENST00000553256 SYNE4Q8N205 404 aa24.92■■□□□ 1.58
PTCH1-227ENST00000553256 UTP14AQ9BVJ6 771 aaKnown RBP24.92■■□□□ 1.58
PTCH1-227ENST00000553256 LTBP3Q9NS15 1303 aa24.9■■□□□ 1.58
PTCH1-227ENST00000553256 GTF2E1P29083 439 aaPredicted RBP24.89■■□□□ 1.58
PTCH1-227ENST00000553256 EXOSC9Q06265 439 aaKnown RBP24.88■■□□□ 1.57
PTCH1-227ENST00000553256 CHMP4AQ9BY43 222 aa24.88■■□□□ 1.57
PTCH1-227ENST00000553256 G2E3Q7L622 706 aa24.87■■□□□ 1.57
PTCH1-227ENST00000553256 ATP5J2-PTCD1G3V325 749 aa24.86■■□□□ 1.57
PTCH1-227ENST00000553256 LMNB1P20700 586 aa24.86■■□□□ 1.57
PTCH1-227ENST00000553256 OLFM4Q6UX06 510 aa24.86■■□□□ 1.57
PTCH1-227ENST00000553256 CRAMP1Q96RY5 1269 aa24.86■■□□□ 1.57
PTCH1-227ENST00000553256 SH3TC1Q8TE82 1336 aa24.86■■□□□ 1.57
PTCH1-227ENST00000553256 CACNA1SQ13698 1873 aa24.85■■□□□ 1.57
PTCH1-227ENST00000553256 TCERG1O14776 1098 aaKnown RBP24.85■■□□□ 1.57
PTCH1-227ENST00000553256 ALDH1B1P30837 517 aa24.85■■□□□ 1.57
PTCH1-227ENST00000553256 GOLGA2Q08379 1002 aa24.85■■□□□ 1.57
PTCH1-227ENST00000553256 SLC51AQ86UW1 340 aa24.85■■□□□ 1.57
PTCH1-227ENST00000553256 RNF181Q9P0P0 153 aa24.85■■□□□ 1.57
PTCH1-227ENST00000553256 METTL22Q9BUU2 404 aaPredicted RBP24.84■■□□□ 1.57
PTCH1-227ENST00000553256 ZNF219Q9P2Y4 722 aaPredicted RBP24.84■■□□□ 1.57
PTCH1-227ENST00000553256 TRMT112Q9UI30 125 aaKnown RBP24.84■■□□□ 1.57
PTCH1-227ENST00000553256 LAMB2P55268 1798 aa24.84■■□□□ 1.57
PTCH1-227ENST00000553256 ZC3H4Q9UPT8 1303 aaKnown RBP24.84■■□□□ 1.57
PTCH1-227ENST00000553256 DDX60Q8IY21 1712 aaKnown RBP24.83■■□□□ 1.57
PTCH1-227ENST00000553256 HCLS1P14317 486 aaPredicted RBP24.83■■□□□ 1.57
PTCH1-227ENST00000553256 RIC3Q7Z5B4 369 aa24.83■■□□□ 1.57
PTCH1-227ENST00000553256 NLRP3Q96P20 1036 aa24.83■■□□□ 1.57
PTCH1-227ENST00000553256 SLC4A2P04920 1241 aa24.82■■□□□ 1.56
PTCH1-227ENST00000553256 IGKV5-2P06315 115 aa24.82■■□□□ 1.56
PTCH1-227ENST00000553256 SOGA3Q5TF21 947 aa24.82■■□□□ 1.56
PTCH1-227ENST00000553256 KSR2Q6VAB6 950 aa24.82■■□□□ 1.56
PTCH1-227ENST00000553256 MYH16Q9H6N6 1097 aa24.82■■□□□ 1.56
PTCH1-227ENST00000553256 PI4KAP2A4QPH2 592 aa24.81■■□□□ 1.56
PTCH1-227ENST00000553256 KIF3CO14782 793 aa24.81■■□□□ 1.56
PTCH1-227ENST00000553256 PI4KAP1Q8N8J0 262 aa24.81■■□□□ 1.56
PTCH1-227ENST00000553256 ZNF428Q96B54 188 aa24.81■■□□□ 1.56
PTCH1-227ENST00000553256 FAM89AQ96GI7 184 aa24.81■■□□□ 1.56
PTCH1-227ENST00000553256 CCDC93Q567U6 631 aa24.8■■□□□ 1.56
PTCH1-227ENST00000553256 TRMT2AQ8IZ69 625 aaKnown RBP24.8■■□□□ 1.56
PTCH1-227ENST00000553256 CCDC191Q8NCU4 936 aa24.8■■□□□ 1.56
PTCH1-227ENST00000553256 TAOK3Q9H2K8 898 aa24.8■■□□□ 1.56
PTCH1-227ENST00000553256 GPBP1L1Q9HC44 474 aaPredicted RBP24.8■■□□□ 1.56
PTCH1-227ENST00000553256 MAP3K2Q9Y2U5 619 aa24.8■■□□□ 1.56
PTCH1-227ENST00000553256 COL4A1P02462 1669 aa24.79■■□□□ 1.56
PTCH1-227ENST00000553256 SF3B3Q15393 1217 aaKnown RBP24.79■■□□□ 1.56
PTCH1-227ENST00000553256 MIER1Q8N108 512 aa24.79■■□□□ 1.56
PTCH1-227ENST00000553256 MYD88Q99836 296 aa24.79■■□□□ 1.56
PTCH1-227ENST00000553256 STK31Q9BXU1 1019 aa24.79■■□□□ 1.56
PTCH1-227ENST00000553256 ABCC4O15439 1325 aa24.79■■□□□ 1.56
PTCH1-227ENST00000553256 DDX58O95786 925 aaKnown RBP24.78■■□□□ 1.56
PTCH1-227ENST00000553256 SLFN5Q08AF3 891 aa24.78■■□□□ 1.56
PTCH1-227ENST00000553256 FLIIQ13045 1269 aa24.78■■□□□ 1.56
PTCH1-227ENST00000553256 DIEXFQ68CQ4 756 aaKnown RBP24.78■■□□□ 1.56
PTCH1-227ENST00000553256 ZBTB38Q8NAP3 1195 aaPredicted RBP24.78■■□□□ 1.56
PTCH1-227ENST00000553256 ZNF526Q8TF50 670 aaPredicted RBP24.78■■□□□ 1.56
PTCH1-227ENST00000553256 RPGRQ92834 1020 aaKnown RBP24.78■■□□□ 1.56
PTCH1-227ENST00000553256 RBM17Q96I25 401 aaKnown RBP24.78■■□□□ 1.56
PTCH1-227ENST00000553256 CCDC88AQ3V6T2 1871 aa24.78■■□□□ 1.56
PTCH1-227ENST00000553256 DICER1Q9UPY3 1922 aaKnown RBP24.78■■□□□ 1.56
PTCH1-227ENST00000553256 FKBP4Q02790 459 aaKnown RBP eCLIP24.77■■□□□ 1.56
PTCH1-227ENST00000553256 CACNA1FO60840 1977 aa24.76■■□□□ 1.55
PTCH1-227ENST00000553256 TIAM2Q8IVF5 1701 aa24.76■■□□□ 1.55
PTCH1-227ENST00000553256 RTKN2Q8IZC4 609 aa24.76■■□□□ 1.55
PTCH1-227ENST00000553256 PSMD1Q99460 953 aa24.76■■□□□ 1.55
PTCH1-227ENST00000553256 PCCAP05165 728 aaPredicted RBP24.75■■□□□ 1.55
PTCH1-227ENST00000553256 C1QTNF8P60827 252 aa24.75■■□□□ 1.55
PTCH1-227ENST00000553256 CC2D2BQ6DHV5 1058 aa24.75■■□□□ 1.55
PTCH1-227ENST00000553256 NMRK2Q9NPI5 230 aa24.75■■□□□ 1.55
PTCH1-227ENST00000553256 E9PSI1 815 aa24.74■■□□□ 1.55
PTCH1-227ENST00000553256 IRS4O14654 1257 aaPredicted RBP24.74■■□□□ 1.55
PTCH1-227ENST00000553256 CDCA7LQ96GN5 454 aa24.74■■□□□ 1.55
PTCH1-227ENST00000553256 CWC25Q9NXE8 425 aaPredicted RBP24.74■■□□□ 1.55
PTCH1-227ENST00000553256 ATP6V0A2Q9Y487 856 aa24.74■■□□□ 1.55
PTCH1-227ENST00000553256 COL4A5P29400 1685 aa24.74■■□□□ 1.55
PTCH1-227ENST00000553256 PPEF1O14829 653 aaPredicted RBP24.73■■□□□ 1.55
PTCH1-227ENST00000553256 CDHR2Q9BYE9 1310 aa24.72■■□□□ 1.55
PTCH1-227ENST00000553256 GLTPD2A6NH11 291 aa24.72■■□□□ 1.55
PTCH1-227ENST00000553256 NEURL1BA8MQ27 555 aa24.72■■□□□ 1.55
PTCH1-227ENST00000553256 BBOX1O75936 387 aa24.72■■□□□ 1.55
PTCH1-227ENST00000553256 GRAPQ13588 217 aa24.72■■□□□ 1.55
PTCH1-227ENST00000553256 GRAPLQ8TC17 118 aaPredicted RBP24.72■■□□□ 1.55
PTCH1-227ENST00000553256 POTECB2RU33 542 aa24.71■■□□□ 1.55
PTCH1-227ENST00000553256 CWF19L2Q2TBE0 894 aaKnown RBP24.71■■□□□ 1.55
PTCH1-227ENST00000553256 RTL5Q5HYW3 569 aaPredicted RBP24.71■■□□□ 1.55
PTCH1-227ENST00000553256 ZNF277Q9NRM2 450 aaPredicted RBP24.71■■□□□ 1.55
PTCH1-227ENST00000553256 TAF1P21675 1872 aa24.7■■□□□ 1.55
PTCH1-227ENST00000553256 LRRC37AA6NMS7 1700 aa24.7■■□□□ 1.54
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms