RNA–Protein interactions for RNA: ENST00000552890.5

TRAFD1-208, Transcript of TRAF-type zinc finger domain containing 1, humanhuman

TSL 2

Gene TRAFD1, Length 1,043 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAFD1-208ENST00000552890 ISCA1Q9BUE6 129 aa13.04□□□□□ -0.32
TRAFD1-208ENST00000552890 MAP3K2Q9Y2U5 619 aa13.04□□□□□ -0.32
TRAFD1-208ENST00000552890 NRXN2Q9P2S2 1712 aa13.04□□□□□ -0.32
TRAFD1-208ENST00000552890 NUP98P52948 1817 aa13.04□□□□□ -0.32
TRAFD1-208ENST00000552890 SENP3-EIF4A1A0A087X0R7 540 aa13.03□□□□□ -0.32
TRAFD1-208ENST00000552890 CC2D2BQ6DHV5 1058 aa13.03□□□□□ -0.32
TRAFD1-208ENST00000552890 C2CD5Q86YS7 1000 aa13.03□□□□□ -0.32
TRAFD1-208ENST00000552890 ZBTB38Q8NAP3 1195 aaPredicted RBP13.03□□□□□ -0.32
TRAFD1-208ENST00000552890 ARHGAP45Q92619 1136 aa13.03□□□□□ -0.32
TRAFD1-208ENST00000552890 RPGRQ92834 1020 aaKnown RBP13.03□□□□□ -0.32
TRAFD1-208ENST00000552890 PHAXQ9H814 394 aaKnown RBP13.03□□□□□ -0.32
TRAFD1-208ENST00000552890 SMC4Q9NTJ3 1288 aa13.03□□□□□ -0.32
TRAFD1-208ENST00000552890 KIF13BQ9NQT8 1826 aa13.03□□□□□ -0.32
TRAFD1-208ENST00000552890 ALDH1L1O75891 902 aa13.02□□□□□ -0.33
TRAFD1-208ENST00000552890 MS4A1P11836 297 aa13.02□□□□□ -0.33
TRAFD1-208ENST00000552890 RBM17Q96I25 401 aaKnown RBP13.02□□□□□ -0.33
TRAFD1-208ENST00000552890 API5Q9BZZ5 524 aaKnown RBP13.02□□□□□ -0.33
TRAFD1-208ENST00000552890 NTSR2O95665 410 aa13.01□□□□□ -0.33
TRAFD1-208ENST00000552890 PCCAP05165 728 aaPredicted RBP13.01□□□□□ -0.33
TRAFD1-208ENST00000552890 SUSD4Q5VX71 490 aa13.01□□□□□ -0.33
TRAFD1-208ENST00000552890 CDCA7LQ96GN5 454 aa13.01□□□□□ -0.33
TRAFD1-208ENST00000552890 MYD88Q99836 296 aa13.01□□□□□ -0.33
TRAFD1-208ENST00000552890 PXDNLA1KZ92 1463 aa13□□□□□ -0.33
TRAFD1-208ENST00000552890 A0A0G2JLW4 131 aa13□□□□□ -0.33
TRAFD1-208ENST00000552890 SRGNP10124 158 aa13□□□□□ -0.33
TRAFD1-208ENST00000552890 DPEP1P16444 411 aa13□□□□□ -0.33
TRAFD1-208ENST00000552890 CRY2Q49AN0 593 aa13□□□□□ -0.33
TRAFD1-208ENST00000552890 PELP1Q8IZL8 1130 aaKnown RBP13□□□□□ -0.33
TRAFD1-208ENST00000552890 ZNF622Q969S3 477 aaKnown RBP eCLIP13□□□□□ -0.332e-7■■□□□ 11.8
TRAFD1-208ENST00000552890 UBN2Q6ZU65 1347 aa12.99□□□□□ -0.33
TRAFD1-208ENST00000552890 FAM177BA6PVY3 158 aa12.99□□□□□ -0.33
TRAFD1-208ENST00000552890 BBOX1O75936 387 aa12.99□□□□□ -0.33
TRAFD1-208ENST00000552890 HOXA10P31260 410 aaPredicted RBP12.99□□□□□ -0.33
TRAFD1-208ENST00000552890 CCT4P50991 539 aaKnown RBP12.99□□□□□ -0.33
TRAFD1-208ENST00000552890 CCDC152Q4G0S7 254 aa12.99□□□□□ -0.33
TRAFD1-208ENST00000552890 DDX46Q7L014 1031 aaKnown RBP12.99□□□□□ -0.33
TRAFD1-208ENST00000552890 MRPL50Q8N5N7 158 aaKnown RBP12.99□□□□□ -0.33
TRAFD1-208ENST00000552890 NLGN2Q8NFZ4 835 aa12.99□□□□□ -0.33
TRAFD1-208ENST00000552890 SSH1Q8WYL5 1049 aa12.99□□□□□ -0.33
TRAFD1-208ENST00000552890 CRAMP1Q96RY5 1269 aa12.99□□□□□ -0.33
TRAFD1-208ENST00000552890 SRCIN1Q9C0H9 1055 aa12.99□□□□□ -0.33
TRAFD1-208ENST00000552890 BCS1LQ9Y276 419 aa12.99□□□□□ -0.33
TRAFD1-208ENST00000552890 AFDNP55196 1824 aaKnown RBP12.99□□□□□ -0.33
TRAFD1-208ENST00000552890 CDHR2Q9BYE9 1310 aa12.98□□□□□ -0.33
TRAFD1-208ENST00000552890 ATP5J2-PTCD1G3V325 749 aa12.98□□□□□ -0.33
TRAFD1-208ENST00000552890 RARSP54136 660 aaKnown RBP12.98□□□□□ -0.33
TRAFD1-208ENST00000552890 ERFEQ4G0M1 354 aa12.98□□□□□ -0.33
TRAFD1-208ENST00000552890 RTKN2Q8IZC4 609 aa12.98□□□□□ -0.33
TRAFD1-208ENST00000552890 CHMP4BQ9H444 224 aaKnown RBP12.98□□□□□ -0.33
TRAFD1-208ENST00000552890 ANKRD36CQ5JPF3 1778 aa12.98□□□□□ -0.33
TRAFD1-208ENST00000552890 NEURL1BA8MQ27 555 aa12.97□□□□□ -0.33
TRAFD1-208ENST00000552890 IRS4O14654 1257 aaPredicted RBP12.97□□□□□ -0.33
TRAFD1-208ENST00000552890 PDE8AO60658 829 aa12.97□□□□□ -0.33
TRAFD1-208ENST00000552890 SF3B3Q15393 1217 aaKnown RBP12.97□□□□□ -0.33
TRAFD1-208ENST00000552890 NUTM1Q86Y26 1132 aa12.97□□□□□ -0.33
TRAFD1-208ENST00000552890 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.97□□□□□ -0.33
TRAFD1-208ENST00000552890 C9orf78Q9NZ63 289 aaPredicted RBP12.97□□□□□ -0.33
TRAFD1-208ENST00000552890 ADCY9O60503 1353 aa12.96□□□□□ -0.33
TRAFD1-208ENST00000552890 TCERG1O14776 1098 aaKnown RBP12.96□□□□□ -0.33
TRAFD1-208ENST00000552890 KCNA3P22001 575 aa12.96□□□□□ -0.33
TRAFD1-208ENST00000552890 GCKRQ14397 625 aa12.96□□□□□ -0.33
TRAFD1-208ENST00000552890 G2E3Q7L622 706 aa12.96□□□□□ -0.33
TRAFD1-208ENST00000552890 ARFGEF2Q9Y6D5 1785 aa12.96□□□□□ -0.34
TRAFD1-208ENST00000552890 ZC3H4Q9UPT8 1303 aaKnown RBP12.95□□□□□ -0.34
TRAFD1-208ENST00000552890 CHRNA5P30532 468 aa12.95□□□□□ -0.34
TRAFD1-208ENST00000552890 BEND3Q5T5X7 828 aa12.95□□□□□ -0.34
TRAFD1-208ENST00000552890 SLC4A10Q6U841 1118 aa12.95□□□□□ -0.34
TRAFD1-208ENST00000552890 FAM89AQ96GI7 184 aa12.95□□□□□ -0.34
TRAFD1-208ENST00000552890 CDC5LQ99459 802 aaKnown RBP12.95□□□□□ -0.34
TRAFD1-208ENST00000552890 PLA2G12BQ9BX93 195 aa12.95□□□□□ -0.34
TRAFD1-208ENST00000552890 VPS33BQ9H267 617 aa12.95□□□□□ -0.34
TRAFD1-208ENST00000552890 H7C1W4 665 aa12.94□□□□□ -0.34
TRAFD1-208ENST00000552890 GRM8O00222 908 aa12.94□□□□□ -0.34
TRAFD1-208ENST00000552890 IGKV5-2P06315 115 aa12.94□□□□□ -0.34
TRAFD1-208ENST00000552890 CCDC93Q567U6 631 aa12.94□□□□□ -0.34
TRAFD1-208ENST00000552890 ZKSCAN2Q63HK3 967 aa12.94□□□□□ -0.34
TRAFD1-208ENST00000552890 PRPF40BQ6NWY9 871 aaKnown RBP12.94□□□□□ -0.34
TRAFD1-208ENST00000552890 SUPT20HQ8NEM7 779 aa12.94□□□□□ -0.34
TRAFD1-208ENST00000552890 LTBP3Q9NS15 1303 aa12.93□□□□□ -0.34
TRAFD1-208ENST00000552890 HCLS1P14317 486 aaPredicted RBP12.93□□□□□ -0.34
TRAFD1-208ENST00000552890 ATF7IPQ6VMQ6 1270 aa12.93□□□□□ -0.34
TRAFD1-208ENST00000552890 ARHGAP27Q6ZUM4 889 aa12.93□□□□□ -0.34
TRAFD1-208ENST00000552890 NOB1Q9ULX3 412 aaKnown RBP12.93□□□□□ -0.34
TRAFD1-208ENST00000552890 RTL9Q8NET4 1388 aa12.93□□□□□ -0.34
TRAFD1-208ENST00000552890 GNAI3P08754 354 aa12.92□□□□□ -0.34
TRAFD1-208ENST00000552890 GRAPQ13588 217 aa12.92□□□□□ -0.34
TRAFD1-208ENST00000552890 CWF19L2Q2TBE0 894 aaKnown RBP12.92□□□□□ -0.34
TRAFD1-208ENST00000552890 UBE3BQ7Z3V4 1068 aa12.92□□□□□ -0.34
TRAFD1-208ENST00000552890 FTSJ3Q8IY81 847 aaKnown RBP12.92□□□□□ -0.34
TRAFD1-208ENST00000552890 GRAPLQ8TC17 118 aaPredicted RBP12.92□□□□□ -0.34
TRAFD1-208ENST00000552890 ARFGEF1Q9Y6D6 1849 aa12.92□□□□□ -0.34
TRAFD1-208ENST00000552890 DLEC1Q9Y238 1755 aa12.92□□□□□ -0.34
TRAFD1-208ENST00000552890 YBX3P16989 372 aaKnown RBP eCLIP12.91□□□□□ -0.342e-6■■■■□ 20.1
TRAFD1-208ENST00000552890 LMNB1P20700 586 aa12.91□□□□□ -0.34
TRAFD1-208ENST00000552890 CTSWP56202 376 aa12.91□□□□□ -0.34
TRAFD1-208ENST00000552890 RPS8P62241 208 aaKnown RBP12.91□□□□□ -0.34
TRAFD1-208ENST00000552890 SP8Q8IXZ3 490 aa12.91□□□□□ -0.34
TRAFD1-208ENST00000552890 ABCC12Q96J65 1359 aa12.91□□□□□ -0.34
TRAFD1-208ENST00000552890 UTYO14607 1347 aa12.9□□□□□ -0.34
TRAFD1-208ENST00000552890 N4BP2Q86UW6 1770 aaPredicted RBP12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms