RNA–Protein interactions for RNA: ENST00000550592.1

LIMA1-205, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 567 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-205ENST00000550592 GGNBP2Q9H3C7 697 aa8.27□□□□□ -1.09
LIMA1-205ENST00000550592 SENP2Q9HC62 589 aa8.27□□□□□ -1.09
LIMA1-205ENST00000550592 GJA3Q9Y6H8 435 aa8.27□□□□□ -1.09
LIMA1-205ENST00000550592 UNCXA6NJT0 531 aa8.26□□□□□ -1.09
LIMA1-205ENST00000550592 E9PSI1 815 aa8.26□□□□□ -1.09
LIMA1-205ENST00000550592 P4HBP07237 508 aaKnown RBP8.26□□□□□ -1.09
LIMA1-205ENST00000550592 PTSQ03393 145 aa8.26□□□□□ -1.09
LIMA1-205ENST00000550592 TYRO3Q06418 890 aa8.26□□□□□ -1.09
LIMA1-205ENST00000550592 ZNF326Q5BKZ1 582 aaKnown RBP8.26□□□□□ -1.09
LIMA1-205ENST00000550592 RTCBQ9Y3I0 505 aaKnown RBP8.26□□□□□ -1.09
LIMA1-205ENST00000550592 SOBPA7XYQ1 873 aa8.25□□□□□ -1.09
LIMA1-205ENST00000550592 EFHC2Q5JST6 749 aa8.25□□□□□ -1.09
LIMA1-205ENST00000550592 XKR5Q6UX68 686 aa8.25□□□□□ -1.09
LIMA1-205ENST00000550592 TRIM47Q96LD4 638 aa8.25□□□□□ -1.09
LIMA1-205ENST00000550592 NIF3L1Q9GZT8 377 aa8.25□□□□□ -1.09
LIMA1-205ENST00000550592 C11orf16Q9NQ32 467 aa8.25□□□□□ -1.09
LIMA1-205ENST00000550592 GRNP28799 593 aaKnown RBP8.24□□□□□ -1.09
LIMA1-205ENST00000550592 TAGLNQ01995 201 aaKnown RBP8.24□□□□□ -1.09
LIMA1-205ENST00000550592 TTC16Q8NEE8 873 aa8.24□□□□□ -1.09
LIMA1-205ENST00000550592 CEP63Q96MT8 703 aa8.24□□□□□ -1.09
LIMA1-205ENST00000550592 FNDC3AQ9Y2H6 1198 aaKnown RBP8.24□□□□□ -1.09
LIMA1-205ENST00000550592 KCNMB2Q9Y691 235 aa8.24□□□□□ -1.09
LIMA1-205ENST00000550592 THBS1P07996 1170 aa8.23□□□□□ -1.09
LIMA1-205ENST00000550592 EPB42P16452 691 aa8.23□□□□□ -1.09
LIMA1-205ENST00000550592 C8orf34Q49A92 452 aa8.23□□□□□ -1.09
LIMA1-205ENST00000550592 FIGNL1Q6PIW4 674 aa8.23□□□□□ -1.09
LIMA1-205ENST00000550592 CMTR1Q8N1G2 835 aaKnown RBP8.23□□□□□ -1.09
LIMA1-205ENST00000550592 ZCCHC2Q9C0B9 1178 aaKnown RBP8.23□□□□□ -1.09
LIMA1-205ENST00000550592 USP20Q9Y2K6 914 aa8.23□□□□□ -1.09
LIMA1-205ENST00000550592 H7C1W4 665 aa8.22□□□□□ -1.09
LIMA1-205ENST00000550592 EGFRP00533 1210 aa8.22□□□□□ -1.09
LIMA1-205ENST00000550592 NEFLP07196 543 aa8.22□□□□□ -1.09
LIMA1-205ENST00000550592 KCNQ4P56696 695 aa8.22□□□□□ -1.09
LIMA1-205ENST00000550592 UBAP2LQ14157 1087 aaKnown RBP8.22□□□□□ -1.09
LIMA1-205ENST00000550592 PDE12Q6L8Q7 609 aaKnown RBP8.22□□□□□ -1.09
LIMA1-205ENST00000550592 RIPOR1Q6ZS17 1223 aa8.22□□□□□ -1.09
LIMA1-205ENST00000550592 CCDC155Q8N6L0 562 aa8.22□□□□□ -1.09
LIMA1-205ENST00000550592 BRD7Q9NPI1 651 aa8.22□□□□□ -1.09
LIMA1-205ENST00000550592 PCDHGC4Q9Y5F7 938 aa8.22□□□□□ -1.09
LIMA1-205ENST00000550592 A6NHS1 94 aa8.21□□□□□ -1.1
LIMA1-205ENST00000550592 FAM157BP0CG42 384 aa8.21□□□□□ -1.1
LIMA1-205ENST00000550592 MAPK8P45983 427 aa8.21□□□□□ -1.1
LIMA1-205ENST00000550592 FGD1P98174 961 aa8.21□□□□□ -1.1
LIMA1-205ENST00000550592 TRIP4Q15650 581 aaPredicted RBP8.21□□□□□ -1.1
LIMA1-205ENST00000550592 ENOX2Q16206 610 aaKnown RBP8.21□□□□□ -1.1
LIMA1-205ENST00000550592 DBN1Q16643 649 aa8.21□□□□□ -1.1
LIMA1-205ENST00000550592 TRIM22Q8IYM9 498 aa8.21□□□□□ -1.1
LIMA1-205ENST00000550592 GMCL1Q96IK5 515 aa8.21□□□□□ -1.1
LIMA1-205ENST00000550592 NUCKS1Q9H1E3 243 aaKnown RBP8.21□□□□□ -1.1
LIMA1-205ENST00000550592 KIAA1522Q9P206 1035 aaPredicted RBP8.21□□□□□ -1.1
LIMA1-205ENST00000550592 GMPR2Q9P2T1 348 aaKnown RBP8.21□□□□□ -1.1
LIMA1-205ENST00000550592 UBAP1LF5GYI3 381 aa8.2□□□□□ -1.1
LIMA1-205ENST00000550592 ATXN7O15265 892 aaPredicted RBP8.2□□□□□ -1.1
LIMA1-205ENST00000550592 EFSO43281 561 aa8.2□□□□□ -1.1
LIMA1-205ENST00000550592 MRRFQ96E11 262 aaKnown RBP8.2□□□□□ -1.1
LIMA1-205ENST00000550592 PRPF40AO75400 957 aaKnown RBP8.19□□□□□ -1.1
LIMA1-205ENST00000550592 LDHBP07195 334 aaKnown RBP8.19□□□□□ -1.1
LIMA1-205ENST00000550592 TNP2Q05952 138 aa8.19□□□□□ -1.1
LIMA1-205ENST00000550592 LAMC2Q13753 1193 aa8.19□□□□□ -1.1
LIMA1-205ENST00000550592 CSRNP1Q96S65 589 aa8.19□□□□□ -1.1
LIMA1-205ENST00000550592 DNAJC25Q9H1X3 360 aa8.19□□□□□ -1.1
LIMA1-205ENST00000550592 NDFIP2Q9NV92 336 aa8.19□□□□□ -1.1
LIMA1-205ENST00000550592 CUEDC1Q9NWM3 386 aaPredicted RBP8.19□□□□□ -1.1
LIMA1-205ENST00000550592 KCNH4Q9UQ05 1017 aa8.19□□□□□ -1.1
LIMA1-205ENST00000550592 XYLBO75191 536 aa8.18□□□□□ -1.1
LIMA1-205ENST00000550592 TNFRSF21O75509 655 aa8.18□□□□□ -1.1
LIMA1-205ENST00000550592 SNRPBP14678 240 aaKnown RBP8.18□□□□□ -1.1
LIMA1-205ENST00000550592 VAMP1P23763 118 aa8.18□□□□□ -1.1
LIMA1-205ENST00000550592 ORC1Q13415 861 aa8.18□□□□□ -1.1
LIMA1-205ENST00000550592 ZNF438Q7Z4V0 828 aa8.18□□□□□ -1.1
LIMA1-205ENST00000550592 ELP3Q9H9T3 547 aa8.18□□□□□ -1.1
LIMA1-205ENST00000550592 WWC3Q9ULE0 1092 aa8.18□□□□□ -1.1
LIMA1-205ENST00000550592 EIF1AYO14602 144 aaKnown RBP8.17□□□□□ -1.1
LIMA1-205ENST00000550592 ITGA6P23229 1130 aa8.17□□□□□ -1.1
LIMA1-205ENST00000550592 ATP2B2Q01814 1243 aa8.17□□□□□ -1.1
LIMA1-205ENST00000550592 SFSWAPQ12872 951 aaKnown RBP8.17□□□□□ -1.1
LIMA1-205ENST00000550592 ALG1LQ6GMV1 187 aa8.17□□□□□ -1.1
LIMA1-205ENST00000550592 PNMA6FA0A0J9YX94 578 aa8.16□□□□□ -1.1
LIMA1-205ENST00000550592 KHNYNO15037 678 aaKnown RBP8.16□□□□□ -1.1
LIMA1-205ENST00000550592 BNIP3LO60238 219 aa8.16□□□□□ -1.1
LIMA1-205ENST00000550592 CPNE3O75131 537 aaKnown RBP8.16□□□□□ -1.1
LIMA1-205ENST00000550592 MAPTP10636 758 aaKnown RBP8.16□□□□□ -1.1
LIMA1-205ENST00000550592 NLRP13Q86W25 1043 aa8.16□□□□□ -1.1
LIMA1-205ENST00000550592 SNX29Q8TEQ0 813 aa8.16□□□□□ -1.1
LIMA1-205ENST00000550592 ZNF837Q96EG3 531 aaPredicted RBP8.16□□□□□ -1.1
LIMA1-205ENST00000550592 CFHR5Q9BXR6 569 aa8.16□□□□□ -1.1
LIMA1-205ENST00000550592 GSX2Q9BZM3 304 aa8.16□□□□□ -1.1
LIMA1-205ENST00000550592 ZFYVE28Q9HCC9 887 aa8.16□□□□□ -1.1
LIMA1-205ENST00000550592 TMEM63CQ9P1W3 806 aa8.16□□□□□ -1.1
LIMA1-205ENST00000550592 HCN2Q9UL51 889 aa8.16□□□□□ -1.1
LIMA1-205ENST00000550592 C11orf95C9JLR9 678 aaPredicted RBP8.15□□□□□ -1.1
LIMA1-205ENST00000550592 LCE2BO14633 110 aa8.15□□□□□ -1.1
LIMA1-205ENST00000550592 CCINQ13939 588 aa8.15□□□□□ -1.1
LIMA1-205ENST00000550592 Q6ZNB5 142 aa8.15□□□□□ -1.1
LIMA1-205ENST00000550592 FBF1Q8TES7 1133 aa8.15□□□□□ -1.1
LIMA1-205ENST00000550592 SETDB2Q96T68 719 aa8.15□□□□□ -1.1
LIMA1-205ENST00000550592 DUSP9Q99956 384 aaKnown RBP8.15□□□□□ -1.1
LIMA1-205ENST00000550592 BCL11AQ9H165 835 aa8.15□□□□□ -1.1
LIMA1-205ENST00000550592 PARP2Q9UGN5 583 aa8.15□□□□□ -1.1
LIMA1-205ENST00000550592 FOXD3Q9UJU5 478 aaPredicted RBP8.15□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms