RNA–Protein interactions for RNA: ENST00000550331.1

NEK3-201, Transcript of NIMA related kinase 3, humanhuman

TSL 2

Gene NEK3, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-201ENST00000550331 POLRMTO00411 1230 aaKnown RBP10.28□□□□□ -0.76
NEK3-201ENST00000550331 TM4SF1P30408 202 aa10.28□□□□□ -0.76
NEK3-201ENST00000550331 COL15A1P39059 1388 aa10.27□□□□□ -0.76
NEK3-201ENST00000550331 ZPR1O75312 459 aa10.27□□□□□ -0.77
NEK3-201ENST00000550331 SLC39A6Q13433 755 aa10.27□□□□□ -0.77
NEK3-201ENST00000550331 NARFQ9UHQ1 456 aa10.27□□□□□ -0.77
NEK3-201ENST00000550331 VPS9D1Q9Y2B5 631 aa10.27□□□□□ -0.77
NEK3-201ENST00000550331 USPL1Q5W0Q7 1092 aa10.26□□□□□ -0.77
NEK3-201ENST00000550331 FBXO22Q8NEZ5 403 aa10.26□□□□□ -0.77
NEK3-201ENST00000550331 GAS2L2Q8NHY3 880 aa10.26□□□□□ -0.77
NEK3-201ENST00000550331 ZBTB1Q9Y2K1 713 aa10.26□□□□□ -0.77
NEK3-201ENST00000550331 TIAM2Q8IVF5 1701 aa10.26□□□□□ -0.77
NEK3-201ENST00000550331 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.25□□□□□ -0.77
NEK3-201ENST00000550331 U2SURPO15042 1029 aaKnown RBP10.25□□□□□ -0.77
NEK3-201ENST00000550331 CHRNA5P30532 468 aa10.25□□□□□ -0.77
NEK3-201ENST00000550331 NFIXQ14938 502 aa10.25□□□□□ -0.77
NEK3-201ENST00000550331 TTC5Q8N0Z6 440 aa10.25□□□□□ -0.77
NEK3-201ENST00000550331 ZFP91Q96JP5 570 aaPredicted RBP10.25□□□□□ -0.77
NEK3-201ENST00000550331 AFDNP55196 1824 aaKnown RBP10.24□□□□□ -0.77
NEK3-201ENST00000550331 GNAT3A8MTJ3 354 aa10.24□□□□□ -0.77
NEK3-201ENST00000550331 STARD3NLO95772 234 aa10.24□□□□□ -0.77
NEK3-201ENST00000550331 VEGFAP15692 232 aaPredicted RBP10.24□□□□□ -0.77
NEK3-201ENST00000550331 RASSF7Q02833 373 aa10.24□□□□□ -0.77
NEK3-201ENST00000550331 TEFQ10587 303 aa10.24□□□□□ -0.77
NEK3-201ENST00000550331 TRAF7Q6Q0C0 670 aa10.24□□□□□ -0.77
NEK3-201ENST00000550331 IL17REQ8NFR9 667 aa10.24□□□□□ -0.77
NEK3-201ENST00000550331 BCL2L12Q9HB09 334 aa10.24□□□□□ -0.77
NEK3-201ENST00000550331 ZC3H4Q9UPT8 1303 aaKnown RBP10.24□□□□□ -0.77
NEK3-201ENST00000550331 UBR2Q8IWV8 1755 aa10.24□□□□□ -0.77
NEK3-201ENST00000550331 LCE2BO14633 110 aa10.23□□□□□ -0.77
NEK3-201ENST00000550331 RIOK3O14730 519 aaKnown RBP10.23□□□□□ -0.77
NEK3-201ENST00000550331 EIF5P55010 431 aaKnown RBP10.23□□□□□ -0.77
NEK3-201ENST00000550331 ZNF790Q6PG37 636 aa10.23□□□□□ -0.77
NEK3-201ENST00000550331 ZNF496Q96IT1 587 aaPredicted RBP10.23□□□□□ -0.77
NEK3-201ENST00000550331 CFAP53Q96M91 514 aa10.23□□□□□ -0.77
NEK3-201ENST00000550331 KCNK17Q96T54 332 aa10.23□□□□□ -0.77
NEK3-201ENST00000550331 TEX13AQ9BXU3 409 aaPredicted RBP10.23□□□□□ -0.77
NEK3-201ENST00000550331 DLEC1Q9Y238 1755 aa10.23□□□□□ -0.77
NEK3-201ENST00000550331 CEMIPQ8WUJ3 1361 aa10.23□□□□□ -0.77
NEK3-201ENST00000550331 HEG1Q9ULI3 1381 aa10.23□□□□□ -0.77
NEK3-201ENST00000550331 NRXN2Q9P2S2 1712 aa10.22□□□□□ -0.77
NEK3-201ENST00000550331 A0A087WZG4 1122 aa10.22□□□□□ -0.77
NEK3-201ENST00000550331 GLTPD2A6NH11 291 aa10.22□□□□□ -0.77
NEK3-201ENST00000550331 SERPINB2P05120 415 aa10.22□□□□□ -0.77
NEK3-201ENST00000550331 LMNB1P20700 586 aa10.22□□□□□ -0.77
NEK3-201ENST00000550331 CANXP27824 592 aaKnown RBP10.22□□□□□ -0.77
NEK3-201ENST00000550331 TMC2Q8TDI7 906 aa10.22□□□□□ -0.77
NEK3-201ENST00000550331 IL6STP40189 918 aaPredicted RBP10.21□□□□□ -0.77
NEK3-201ENST00000550331 FMNL2Q96PY5 1086 aa10.21□□□□□ -0.77
NEK3-201ENST00000550331 SLC4A5Q9BY07 1137 aa10.21□□□□□ -0.77
NEK3-201ENST00000550331 RSPH6AQ9H0K4 717 aa10.21□□□□□ -0.77
NEK3-201ENST00000550331 DICER1Q9UPY3 1922 aaKnown RBP10.21□□□□□ -0.78
NEK3-201ENST00000550331 ITGBL1O95965 494 aaPredicted RBP10.2□□□□□ -0.78
NEK3-201ENST00000550331 PRKAR2BP31323 418 aa10.2□□□□□ -0.78
NEK3-201ENST00000550331 CNGB1Q14028 1251 aaPredicted RBP10.2□□□□□ -0.78
NEK3-201ENST00000550331 IFNLR1Q8IU57 520 aaPredicted RBP10.2□□□□□ -0.78
NEK3-201ENST00000550331 PTCD2Q8WV60 388 aaKnown RBP10.2□□□□□ -0.78
NEK3-201ENST00000550331 PDZRN3Q9UPQ7 1066 aa10.2□□□□□ -0.78
NEK3-201ENST00000550331 NUDCQ9Y266 331 aa10.2□□□□□ -0.78
NEK3-201ENST00000550331 SCN7AQ01118 1682 aa10.19□□□□□ -0.78
NEK3-201ENST00000550331 CARMIL3Q8ND23 1372 aa10.19□□□□□ -0.78
NEK3-201ENST00000550331 GOLGA8CPA6NN73 597 aa10.19□□□□□ -0.78
NEK3-201ENST00000550331 BTBD11A6QL63 1104 aa10.19□□□□□ -0.78
NEK3-201ENST00000550331 H0YIN7 160 aa10.19□□□□□ -0.78
NEK3-201ENST00000550331 C2CD5Q86YS7 1000 aa10.19□□□□□ -0.78
NEK3-201ENST00000550331 TTLL6Q8N841 843 aa10.19□□□□□ -0.78
NEK3-201ENST00000550331 WNT2BQ93097 391 aa10.19□□□□□ -0.78
NEK3-201ENST00000550331 PHACTR3Q96KR7 559 aa10.19□□□□□ -0.78
NEK3-201ENST00000550331 MKRN1Q9UHC7 482 aaKnown RBP10.19□□□□□ -0.78
NEK3-201ENST00000550331 SIPA1L3O60292 1781 aaPredicted RBP10.19□□□□□ -0.78
NEK3-201ENST00000550331 BHMG1C9JSJ3 638 aaPredicted RBP10.18□□□□□ -0.78
NEK3-201ENST00000550331 PPP2R1AP30153 589 aa10.18□□□□□ -0.78
NEK3-201ENST00000550331 TBC1D9BQ66K14 1250 aa10.18□□□□□ -0.78
NEK3-201ENST00000550331 BICDL1Q6ZP65 573 aa10.18□□□□□ -0.78
NEK3-201ENST00000550331 NPM2Q86SE8 214 aaKnown RBP10.18□□□□□ -0.78
NEK3-201ENST00000550331 BRIP1Q9BX63 1249 aa10.18□□□□□ -0.78
NEK3-201ENST00000550331 U2AF1L5P0DN76 240 aaPredicted RBP10.17□□□□□ -0.78
NEK3-201ENST00000550331 PDE6BP35913 854 aa10.17□□□□□ -0.78
NEK3-201ENST00000550331 U2AF1Q01081 240 aaKnown RBP eCLIP10.17□□□□□ -0.78
NEK3-201ENST00000550331 RTF1Q92541 710 aaKnown RBP10.17□□□□□ -0.78
NEK3-201ENST00000550331 TBC1D2BQ9UPU7 963 aa10.17□□□□□ -0.78
NEK3-201ENST00000550331 ZNF330Q9Y3S2 320 aaPredicted RBP10.17□□□□□ -0.78
NEK3-201ENST00000550331 CACNA1SQ13698 1873 aa10.17□□□□□ -0.78
NEK3-201ENST00000550331 FER1L6Q2WGJ9 1857 aa10.17□□□□□ -0.78
NEK3-201ENST00000550331 VIRMAQ69YN4 1812 aaKnown RBP10.17□□□□□ -0.78
NEK3-201ENST00000550331 POTECB2RU33 542 aa10.16□□□□□ -0.78
NEK3-201ENST00000550331 NFKBIEO00221 500 aa10.16□□□□□ -0.78
NEK3-201ENST00000550331 FOXN1O15353 648 aa10.16□□□□□ -0.78
NEK3-201ENST00000550331 HTATSF1O43719 755 aaKnown RBP10.16□□□□□ -0.78
NEK3-201ENST00000550331 CAMTA2O94983 1202 aa10.16□□□□□ -0.78
NEK3-201ENST00000550331 A1BGP04217 495 aa10.16□□□□□ -0.78
NEK3-201ENST00000550331 PRR5LQ6MZQ0 368 aa10.16□□□□□ -0.78
NEK3-201ENST00000550331 CNBD1Q8NA66 436 aa10.16□□□□□ -0.78
NEK3-201ENST00000550331 SETDB2Q96T68 719 aa10.16□□□□□ -0.78
NEK3-201ENST00000550331 RGL2O15211 777 aa10.15□□□□□ -0.78
NEK3-201ENST00000550331 KCNQ3O43525 872 aa10.15□□□□□ -0.78
NEK3-201ENST00000550331 SNRPA1P09661 255 aaKnown RBP10.15□□□□□ -0.78
NEK3-201ENST00000550331 DZIP3Q86Y13 1208 aaKnown RBP10.15□□□□□ -0.78
NEK3-201ENST00000550331 AIDAQ96BJ3 306 aa10.15□□□□□ -0.78
NEK3-201ENST00000550331 PRDM10Q9NQV6 1147 aa10.15□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms