RNA–Protein interactions for RNA: ENST00000550136.1

PTCH1-220, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 2,388 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-220ENST00000550136 EN1Q05925 392 aaPredicted RBP11.09□□□□□ -0.63
PTCH1-220ENST00000550136 TTC19Q6DKK2 380 aaPredicted RBP11.09□□□□□ -0.63
PTCH1-220ENST00000550136 MSL3Q8N5Y2 521 aaKnown RBP11.09□□□□□ -0.63
PTCH1-220ENST00000550136 C22orf23Q9BZE7 217 aa11.09□□□□□ -0.63
PTCH1-220ENST00000550136 IRAK4Q9NWZ3 460 aa11.09□□□□□ -0.63
PTCH1-220ENST00000550136 BRD4O60885 1362 aaPredicted RBP11.09□□□□□ -0.63
PTCH1-220ENST00000550136 KIF7Q2M1P5 1343 aa11.09□□□□□ -0.63
PTCH1-220ENST00000550136 SCP2P22307 547 aa11.09□□□□□ -0.63
PTCH1-220ENST00000550136 NUCB2P80303 420 aa11.09□□□□□ -0.63
PTCH1-220ENST00000550136 GPS2Q13227 327 aa11.09□□□□□ -0.63
PTCH1-220ENST00000550136 KIAA1524Q8TCG1 905 aa11.09□□□□□ -0.63
PTCH1-220ENST00000550136 PLCH1Q4KWH8 1693 aa11.08□□□□□ -0.64
PTCH1-220ENST00000550136 NEXMIFQ5QGS0 1516 aa11.08□□□□□ -0.64
PTCH1-220ENST00000550136 SMC2O95347 1197 aa11.08□□□□□ -0.64
PTCH1-220ENST00000550136 ESCO1Q5FWF5 840 aa11.08□□□□□ -0.64
PTCH1-220ENST00000550136 TPM1P09493 284 aa11.08□□□□□ -0.64
PTCH1-220ENST00000550136 AP1ARQ63HQ0 302 aa11.08□□□□□ -0.64
PTCH1-220ENST00000550136 NAIF1Q69YI7 327 aaPredicted RBP11.08□□□□□ -0.64
PTCH1-220ENST00000550136 TNS1Q9HBL0 1735 aaKnown RBP11.07□□□□□ -0.64
PTCH1-220ENST00000550136 SPATA31A3Q5VYP0 1347 aa11.07□□□□□ -0.64
PTCH1-220ENST00000550136 SF3A1Q15459 793 aaKnown RBP11.07□□□□□ -0.64
PTCH1-220ENST00000550136 TTC12Q9H892 705 aaPredicted RBP11.07□□□□□ -0.64
PTCH1-220ENST00000550136 FOXO3O43524 673 aa11.06□□□□□ -0.64
PTCH1-220ENST00000550136 TPM4P67936 248 aa11.06□□□□□ -0.64
PTCH1-220ENST00000550136 DDX46Q7L014 1031 aaKnown RBP11.06□□□□□ -0.64
PTCH1-220ENST00000550136 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.06□□□□□ -0.64
PTCH1-220ENST00000550136 MIEF2Q96C03 454 aa11.06□□□□□ -0.64
PTCH1-220ENST00000550136 CDCA7LQ96GN5 454 aa11.06□□□□□ -0.64
PTCH1-220ENST00000550136 PTPRCP08575 1304 aa11.06□□□□□ -0.64
PTCH1-220ENST00000550136 CD151P48509 253 aa11.06□□□□□ -0.64
PTCH1-220ENST00000550136 ZRSR2Q15696 482 aaKnown RBP11.06□□□□□ -0.64
PTCH1-220ENST00000550136 V9GYY5 206 aaPredicted RBP11.06□□□□□ -0.64
PTCH1-220ENST00000550136 PARD3Q8TEW0 1356 aa11.06□□□□□ -0.64
PTCH1-220ENST00000550136 ADGRB2O60241 1585 aa11.06□□□□□ -0.64
PTCH1-220ENST00000550136 KINO60870 393 aaKnown RBP11.05□□□□□ -0.64
PTCH1-220ENST00000550136 EIF3JO75822 258 aaKnown RBP11.05□□□□□ -0.64
PTCH1-220ENST00000550136 ABCD1P33897 745 aa11.05□□□□□ -0.64
PTCH1-220ENST00000550136 TRAF1Q13077 416 aa11.05□□□□□ -0.64
PTCH1-220ENST00000550136 FMNL3Q8IVF7 1028 aa11.05□□□□□ -0.64
PTCH1-220ENST00000550136 PLEKHH1Q9ULM0 1364 aa11.05□□□□□ -0.64
PTCH1-220ENST00000550136 FAM163BP0C2L3 166 aa11.05□□□□□ -0.64
PTCH1-220ENST00000550136 SSFA2P28290 1259 aa11.05□□□□□ -0.64
PTCH1-220ENST00000550136 LMBRD1Q9NUN5 540 aa11.05□□□□□ -0.64
PTCH1-220ENST00000550136 WWC2Q6AWC2 1192 aa11.04□□□□□ -0.64
PTCH1-220ENST00000550136 STAG1Q8WVM7 1258 aa11.04□□□□□ -0.64
PTCH1-220ENST00000550136 KIF1AQ12756 1690 aa11.04□□□□□ -0.64
PTCH1-220ENST00000550136 INSRP06213 1382 aa11.04□□□□□ -0.64
PTCH1-220ENST00000550136 MYBPC2Q14324 1141 aa11.04□□□□□ -0.64
PTCH1-220ENST00000550136 FBXO38Q6PIJ6 1188 aa11.04□□□□□ -0.64
PTCH1-220ENST00000550136 EXOC8Q8IYI6 725 aa11.04□□□□□ -0.64
PTCH1-220ENST00000550136 ZNF428Q96B54 188 aa11.04□□□□□ -0.64
PTCH1-220ENST00000550136 NEBLO76041 1014 aa11.03□□□□□ -0.64
PTCH1-220ENST00000550136 CCDC112Q8NEF3 446 aa11.03□□□□□ -0.64
PTCH1-220ENST00000550136 CAMKK2Q96RR4 588 aa11.03□□□□□ -0.64
PTCH1-220ENST00000550136 SH3GL3Q99963 347 aa11.03□□□□□ -0.64
PTCH1-220ENST00000550136 CCP110O43303 1012 aa11.03□□□□□ -0.64
PTCH1-220ENST00000550136 KDM4AO75164 1064 aa11.03□□□□□ -0.64
PTCH1-220ENST00000550136 PPFIA2O75334 1257 aa11.03□□□□□ -0.64
PTCH1-220ENST00000550136 IGHDP01880 384 aa11.03□□□□□ -0.64
PTCH1-220ENST00000550136 IVLP07476 585 aa11.03□□□□□ -0.64
PTCH1-220ENST00000550136 RWDD2BP57060 319 aa11.03□□□□□ -0.64
PTCH1-220ENST00000550136 EZH2Q15910 746 aaKnown RBP11.03□□□□□ -0.64
PTCH1-220ENST00000550136 TRIM74Q86UV6 250 aa11.03□□□□□ -0.64
PTCH1-220ENST00000550136 TRIM73Q86UV7 250 aa11.03□□□□□ -0.64
PTCH1-220ENST00000550136 CCDC26Q8TAB7 109 aa11.03□□□□□ -0.64
PTCH1-220ENST00000550136 SMARCE1Q969G3 411 aa11.03□□□□□ -0.64
PTCH1-220ENST00000550136 FARP1Q9Y4F1 1045 aaPredicted RBP11.03□□□□□ -0.64
PTCH1-220ENST00000550136 NRAPQ86VF7 1730 aa11.02□□□□□ -0.64
PTCH1-220ENST00000550136 A0A0G2JS52 829 aa11.02□□□□□ -0.65
PTCH1-220ENST00000550136 GOLGA6CA6NDK9 693 aa11.02□□□□□ -0.65
PTCH1-220ENST00000550136 GOLGA6BA6NDN3 693 aa11.02□□□□□ -0.65
PTCH1-220ENST00000550136 EIF3CLB5ME19 914 aaKnown RBP11.02□□□□□ -0.65
PTCH1-220ENST00000550136 SGSM2O43147 1006 aa11.02□□□□□ -0.65
PTCH1-220ENST00000550136 GOLGA6DP0CG33 693 aa11.02□□□□□ -0.65
PTCH1-220ENST00000550136 MAGEA8P43361 318 aa11.02□□□□□ -0.65
PTCH1-220ENST00000550136 NAA30Q147X3 362 aaPredicted RBP11.02□□□□□ -0.65
PTCH1-220ENST00000550136 RNF20Q5VTR2 975 aa11.02□□□□□ -0.65
PTCH1-220ENST00000550136 EIF3CQ99613 913 aaKnown RBP11.02□□□□□ -0.65
PTCH1-220ENST00000550136 GOLGA6AQ9NYA3 693 aa11.02□□□□□ -0.65
PTCH1-220ENST00000550136 SYCE3A1L190 88 aa11.02□□□□□ -0.65
PTCH1-220ENST00000550136 HTATSF1O43719 755 aaKnown RBP11.02□□□□□ -0.65
PTCH1-220ENST00000550136 SETSIPP0DME0 302 aa11.02□□□□□ -0.65
PTCH1-220ENST00000550136 SKILP12757 684 aa11.02□□□□□ -0.65
PTCH1-220ENST00000550136 FOXD4L6Q3SYB3 417 aaPredicted RBP11.02□□□□□ -0.65
PTCH1-220ENST00000550136 FOXD4L3Q6VB84 417 aaPredicted RBP11.02□□□□□ -0.65
PTCH1-220ENST00000550136 CCDC186Q7Z3E2 898 aa11.02□□□□□ -0.65
PTCH1-220ENST00000550136 ZSCAN16Q9H4T2 348 aaPredicted RBP11.02□□□□□ -0.65
PTCH1-220ENST00000550136 PSD3Q9NYI0 1048 aa11.02□□□□□ -0.65
PTCH1-220ENST00000550136 CPSF2Q9P2I0 782 aaKnown RBP11.02□□□□□ -0.65
PTCH1-220ENST00000550136 ABCA3Q99758 1704 aa11.02□□□□□ -0.65
PTCH1-220ENST00000550136 RREB1Q92766 1687 aa11.01□□□□□ -0.65
PTCH1-220ENST00000550136 NUP155O75694 1391 aa11.01□□□□□ -0.65
PTCH1-220ENST00000550136 CORO7P57737 925 aa11.01□□□□□ -0.65
PTCH1-220ENST00000550136 TBC1D8BQ0IIM8 1120 aa11.01□□□□□ -0.65
PTCH1-220ENST00000550136 RNF214Q8ND24 703 aa11.01□□□□□ -0.65
PTCH1-220ENST00000550136 DNAAF4Q8WXU2 420 aa11.01□□□□□ -0.65
PTCH1-220ENST00000550136 GTF3C6Q969F1 213 aa11.01□□□□□ -0.65
PTCH1-220ENST00000550136 TSPY26PQ9H489 355 aa11.01□□□□□ -0.65
PTCH1-220ENST00000550136 NUB1Q9Y5A7 615 aa11.01□□□□□ -0.65
PTCH1-220ENST00000550136 FHOD1Q9Y613 1164 aa11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms