RNA–Protein interactions for RNA: ENST00000549547.1

PRPF40B-210, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 5

Gene PRPF40B, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-210ENST00000549547 MASTLQ96GX5 879 aa16.65■□□□□ 0.26
PRPF40B-210ENST00000549547 KLRG2A4D1S0 409 aaPredicted RBP16.64■□□□□ 0.25
PRPF40B-210ENST00000549547 SRGNP10124 158 aa16.64■□□□□ 0.25
PRPF40B-210ENST00000549547 YY1P25490 414 aa16.64■□□□□ 0.25
PRPF40B-210ENST00000549547 TRIM28Q13263 835 aaKnown RBP16.64■□□□□ 0.25
PRPF40B-210ENST00000549547 ERFEQ4G0M1 354 aa16.64■□□□□ 0.25
PRPF40B-210ENST00000549547 NUTM1Q86Y26 1132 aa16.64■□□□□ 0.25
PRPF40B-210ENST00000549547 ISCA1Q9BUE6 129 aa16.64■□□□□ 0.25
PRPF40B-210ENST00000549547 TNRC6CQ9HCJ0 1690 aaKnown RBP16.64■□□□□ 0.25
PRPF40B-210ENST00000549547 ABCC12Q96J65 1359 aa16.64■□□□□ 0.25
PRPF40B-210ENST00000549547 NPR1P16066 1061 aa16.63■□□□□ 0.25
PRPF40B-210ENST00000549547 KSR2Q6VAB6 950 aa16.63■□□□□ 0.25
PRPF40B-210ENST00000549547 TRMT112Q9UI30 125 aaKnown RBP16.63■□□□□ 0.25
PRPF40B-210ENST00000549547 TCERG1O14776 1098 aaKnown RBP16.62■□□□□ 0.25
PRPF40B-210ENST00000549547 NEXNQ0ZGT2 675 aa16.62■□□□□ 0.25
PRPF40B-210ENST00000549547 FLIIQ13045 1269 aa16.62■□□□□ 0.25
PRPF40B-210ENST00000549547 ZNF428Q96B54 188 aa16.62■□□□□ 0.25
PRPF40B-210ENST00000549547 SH3TC1Q8TE82 1336 aa16.62■□□□□ 0.25
PRPF40B-210ENST00000549547 HSP90B1P14625 803 aaKnown RBP16.61■□□□□ 0.25
PRPF40B-210ENST00000549547 ALDH1B1P30837 517 aa16.61■□□□□ 0.25
PRPF40B-210ENST00000549547 CRY2Q49AN0 593 aa16.61■□□□□ 0.25
PRPF40B-210ENST00000549547 SLC10A5Q5PT55 438 aa16.61■□□□□ 0.25
PRPF40B-210ENST00000549547 SOGA3Q5TF21 947 aa16.61■□□□□ 0.25
PRPF40B-210ENST00000549547 ARHGAP27Q6ZUM4 889 aa16.61■□□□□ 0.25
PRPF40B-210ENST00000549547 NLRP3Q96P20 1036 aa16.61■□□□□ 0.25
PRPF40B-210ENST00000549547 METTL22Q9BUU2 404 aaPredicted RBP16.61■□□□□ 0.25
PRPF40B-210ENST00000549547 MAP3K2Q9Y2U5 619 aa16.61■□□□□ 0.25
PRPF40B-210ENST00000549547 LAMB2P55268 1798 aa16.61■□□□□ 0.25
PRPF40B-210ENST00000549547 PI4KAP2A4QPH2 592 aa16.6■□□□□ 0.25
PRPF40B-210ENST00000549547 ATP5J2-PTCD1G3V325 749 aa16.6■□□□□ 0.25
PRPF40B-210ENST00000549547 HNRNPUQ00839 825 aaKnown RBP eCLIP16.6■□□□□ 0.25
PRPF40B-210ENST00000549547 FKBP5Q13451 457 aaPredicted RBP16.6■□□□□ 0.25
PRPF40B-210ENST00000549547 PI4KAP1Q8N8J0 262 aa16.6■□□□□ 0.25
PRPF40B-210ENST00000549547 CCDC191Q8NCU4 936 aa16.6■□□□□ 0.25
PRPF40B-210ENST00000549547 RPGRQ92834 1020 aaKnown RBP16.6■□□□□ 0.25
PRPF40B-210ENST00000549547 MYD88Q99836 296 aa16.6■□□□□ 0.25
PRPF40B-210ENST00000549547 SLX4Q8IY92 1834 aa16.59■□□□□ 0.25
PRPF40B-210ENST00000549547 CT47B1P0C2W7 299 aaPredicted RBP16.59■□□□□ 0.25
PRPF40B-210ENST00000549547 G2E3Q7L622 706 aa16.59■□□□□ 0.25
PRPF40B-210ENST00000549547 TRMT2AQ8IZ69 625 aaKnown RBP16.59■□□□□ 0.25
PRPF40B-210ENST00000549547 CDCA7LQ96GN5 454 aa16.59■□□□□ 0.25
PRPF40B-210ENST00000549547 CWC25Q9NXE8 425 aaPredicted RBP16.59■□□□□ 0.25
PRPF40B-210ENST00000549547 ADCY9O60503 1353 aa16.59■□□□□ 0.25
PRPF40B-210ENST00000549547 DDX60Q8IY21 1712 aaKnown RBP16.59■□□□□ 0.25
PRPF40B-210ENST00000549547 HOXA10P31260 410 aaPredicted RBP16.58■□□□□ 0.24
PRPF40B-210ENST00000549547 PRPF40BQ6NWY9 871 aaKnown RBP16.58■□□□□ 0.24
PRPF40B-210ENST00000549547 RBM17Q96I25 401 aaKnown RBP16.58■□□□□ 0.24
PRPF40B-210ENST00000549547 FER1L6Q2WGJ9 1857 aa16.56■□□□□ 0.24
PRPF40B-210ENST00000549547 ZBTB38Q8NAP3 1195 aaPredicted RBP16.56■□□□□ 0.24
PRPF40B-210ENST00000549547 DNAAF4Q8WXU2 420 aa16.56■□□□□ 0.24
PRPF40B-210ENST00000549547 FAM89AQ96GI7 184 aa16.56■□□□□ 0.24
PRPF40B-210ENST00000549547 CRAMP1Q96RY5 1269 aa16.56■□□□□ 0.24
PRPF40B-210ENST00000549547 SBF1O95248 1867 aa16.56■□□□□ 0.24
PRPF40B-210ENST00000549547 C21orf2O43822 256 aa16.55■□□□□ 0.24
PRPF40B-210ENST00000549547 PCCAP05165 728 aaPredicted RBP16.55■□□□□ 0.24
PRPF40B-210ENST00000549547 HCLS1P14317 486 aaPredicted RBP16.55■□□□□ 0.24
PRPF40B-210ENST00000549547 ALDH1L2Q3SY69 923 aa16.55■□□□□ 0.24
PRPF40B-210ENST00000549547 IRS4O14654 1257 aaPredicted RBP16.54■□□□□ 0.24
PRPF40B-210ENST00000549547 CCDC93Q567U6 631 aa16.54■□□□□ 0.24
PRPF40B-210ENST00000549547 CC2D2BQ6DHV5 1058 aa16.54■□□□□ 0.24
PRPF40B-210ENST00000549547 DDX46Q7L014 1031 aaKnown RBP16.54■□□□□ 0.24
PRPF40B-210ENST00000549547 MYH3P11055 1940 aa16.53■□□□□ 0.24
PRPF40B-210ENST00000549547 ZBED9Q6R2W3 1325 aa16.53■□□□□ 0.24
PRPF40B-210ENST00000549547 CCDC88AQ3V6T2 1871 aa16.53■□□□□ 0.24
PRPF40B-210ENST00000549547 NEURL1BA8MQ27 555 aa16.53■□□□□ 0.24
PRPF40B-210ENST00000549547 IGKV5-2P06315 115 aa16.53■□□□□ 0.24
PRPF40B-210ENST00000549547 GRIPAP1Q4V328 841 aa16.53■□□□□ 0.24
PRPF40B-210ENST00000549547 LINS1Q8NG48 757 aa16.53■□□□□ 0.24
PRPF40B-210ENST00000549547 TMX4Q9H1E5 349 aaPredicted RBP16.53■□□□□ 0.24
PRPF40B-210ENST00000549547 ZNF219Q9P2Y4 722 aaPredicted RBP16.53■□□□□ 0.24
PRPF40B-210ENST00000549547 PTPRCP08575 1304 aa16.52■□□□□ 0.24
PRPF40B-210ENST00000549547 CDHR2Q9BYE9 1310 aa16.52■□□□□ 0.24
PRPF40B-210ENST00000549547 LTBP3Q9NS15 1303 aa16.52■□□□□ 0.24
PRPF40B-210ENST00000549547 LMNB1P20700 586 aa16.52■□□□□ 0.24
PRPF40B-210ENST00000549547 SF3B3Q15393 1217 aaKnown RBP16.52■□□□□ 0.24
PRPF40B-210ENST00000549547 RTL5Q5HYW3 569 aaPredicted RBP16.52■□□□□ 0.24
PRPF40B-210ENST00000549547 C3orf67Q6ZVT6 689 aa16.52■□□□□ 0.24
PRPF40B-210ENST00000549547 RTKN2Q8IZC4 609 aa16.52■□□□□ 0.24
PRPF40B-210ENST00000549547 SYNE4Q8N205 404 aa16.52■□□□□ 0.24
PRPF40B-210ENST00000549547 MRPL50Q8N5N7 158 aaKnown RBP16.52■□□□□ 0.24
PRPF40B-210ENST00000549547 SSH1Q8WYL5 1049 aa16.52■□□□□ 0.24
PRPF40B-210ENST00000549547 TAOK3Q9H2K8 898 aa16.52■□□□□ 0.24
PRPF40B-210ENST00000549547 DICER1Q9UPY3 1922 aaKnown RBP16.51■□□□□ 0.23
PRPF40B-210ENST00000549547 CWF19L2Q2TBE0 894 aaKnown RBP16.51■□□□□ 0.23
PRPF40B-210ENST00000549547 C9orf131Q5VYM1 1079 aa16.51■□□□□ 0.23
PRPF40B-210ENST00000549547 C7orf43Q8WVR3 580 aa16.51■□□□□ 0.23
PRPF40B-210ENST00000549547 SMC4Q9NTJ3 1288 aa16.51■□□□□ 0.23
PRPF40B-210ENST00000549547 ABCC4O15439 1325 aa16.5■□□□□ 0.23
PRPF40B-210ENST00000549547 ZC3H4Q9UPT8 1303 aaKnown RBP16.5■□□□□ 0.23
PRPF40B-210ENST00000549547 NFKBIEO00221 500 aa16.5■□□□□ 0.23
PRPF40B-210ENST00000549547 PPEF1O14829 653 aaPredicted RBP16.5■□□□□ 0.23
PRPF40B-210ENST00000549547 PDE8AO60658 829 aa16.5■□□□□ 0.23
PRPF40B-210ENST00000549547 BBOX1O75936 387 aa16.5■□□□□ 0.23
PRPF40B-210ENST00000549547 TMC4Q7Z404 712 aa16.5■□□□□ 0.23
PRPF40B-210ENST00000549547 RNF181Q9P0P0 153 aa16.5■□□□□ 0.23
PRPF40B-210ENST00000549547 TIAM2Q8IVF5 1701 aa16.5■□□□□ 0.23
PRPF40B-210ENST00000549547 F6X3S4 739 aa16.49■□□□□ 0.23
PRPF40B-210ENST00000549547 RASSF7Q02833 373 aa16.49■□□□□ 0.23
PRPF40B-210ENST00000549547 GRAPQ13588 217 aa16.49■□□□□ 0.23
PRPF40B-210ENST00000549547 GCKRQ14397 625 aa16.49■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms