RNA–Protein interactions for RNA: ENST00000546534.1

SCAF11-208, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 3

Gene SCAF11, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-208ENST00000546534 PHACTR3Q96KR7 559 aa17.14■□□□□ 0.33
SCAF11-208ENST00000546534 KIF7Q2M1P5 1343 aa17.14■□□□□ 0.33
SCAF11-208ENST00000546534 ALDH1B1P30837 517 aa17.13■□□□□ 0.33
SCAF11-208ENST00000546534 DDX21Q9NR30 783 aaKnown RBP eCLIP17.13■□□□□ 0.33
SCAF11-208ENST00000546534 NBPF26B4DH59 902 aa17.12■□□□□ 0.33
SCAF11-208ENST00000546534 SNRPA1P09661 255 aaKnown RBP17.12■□□□□ 0.33
SCAF11-208ENST00000546534 FMR1Q06787 632 aaKnown RBP eCLIP17.12■□□□□ 0.33
SCAF11-208ENST00000546534 NBPF10Q6P3W6 841 aaKnown RBP17.12■□□□□ 0.33
SCAF11-208ENST00000546534 NBPF15Q8N660 670 aa17.12■□□□□ 0.33
SCAF11-208ENST00000546534 JDP2Q8WYK2 163 aa17.11■□□□□ 0.33
SCAF11-208ENST00000546534 PSMD1Q99460 953 aa17.11■□□□□ 0.33
SCAF11-208ENST00000546534 GJA3Q9Y6H8 435 aa17.11■□□□□ 0.33
SCAF11-208ENST00000546534 RGL2O15211 777 aa17.1■□□□□ 0.33
SCAF11-208ENST00000546534 PRKAR2BP31323 418 aa17.1■□□□□ 0.33
SCAF11-208ENST00000546534 CNGB1Q14028 1251 aaPredicted RBP17.1■□□□□ 0.33
SCAF11-208ENST00000546534 HLFQ16534 295 aa17.1■□□□□ 0.33
SCAF11-208ENST00000546534 CAPNS2Q96L46 248 aa17.1■□□□□ 0.33
SCAF11-208ENST00000546534 SNED1Q8TER0 1413 aa17.1■□□□□ 0.33
SCAF11-208ENST00000546534 GTF2E1P29083 439 aaPredicted RBP17.09■□□□□ 0.33
SCAF11-208ENST00000546534 EPS15P42566 896 aa17.09■□□□□ 0.33
SCAF11-208ENST00000546534 EIF6P56537 245 aaKnown RBP17.09■□□□□ 0.33
SCAF11-208ENST00000546534 COL4A5P29400 1685 aa17.09■□□□□ 0.33
SCAF11-208ENST00000546534 CCDC85CA6NKD9 419 aa17.08■□□□□ 0.32
SCAF11-208ENST00000546534 LMOD1P29536 600 aaPredicted RBP17.08■□□□□ 0.32
SCAF11-208ENST00000546534 GRM1Q13255 1194 aa17.08■□□□□ 0.32
SCAF11-208ENST00000546534 CRY2Q49AN0 593 aa17.08■□□□□ 0.32
SCAF11-208ENST00000546534 CYP4F22Q6NT55 531 aa17.08■□□□□ 0.32
SCAF11-208ENST00000546534 PAXIP1Q6ZW49 1069 aaPredicted RBP17.08■□□□□ 0.32
SCAF11-208ENST00000546534 MCM10Q7L590 875 aa17.08■□□□□ 0.32
SCAF11-208ENST00000546534 GPR101Q96P66 508 aaPredicted RBP17.08■□□□□ 0.32
SCAF11-208ENST00000546534 RSPH6AQ9H0K4 717 aa17.08■□□□□ 0.32
SCAF11-208ENST00000546534 LTBP1Q14766 1721 aa17.07■□□□□ 0.32
SCAF11-208ENST00000546534 ECE1P42892 770 aa17.07■□□□□ 0.32
SCAF11-208ENST00000546534 SCNN1DP51172 638 aa17.07■□□□□ 0.32
SCAF11-208ENST00000546534 CST9Q5W186 159 aa17.07■□□□□ 0.32
SCAF11-208ENST00000546534 BEGAINQ9BUH8 593 aa17.07■□□□□ 0.32
SCAF11-208ENST00000546534 ABCC12Q96J65 1359 aa17.06■□□□□ 0.32
SCAF11-208ENST00000546534 TRAF5O00463 557 aa17.06■□□□□ 0.32
SCAF11-208ENST00000546534 MLLT1Q03111 559 aaPredicted RBP17.06■□□□□ 0.32
SCAF11-208ENST00000546534 CC2D2BQ6DHV5 1058 aa17.06■□□□□ 0.32
SCAF11-208ENST00000546534 NUTM1Q86Y26 1132 aa17.06■□□□□ 0.32
SCAF11-208ENST00000546534 RTF1Q92541 710 aaKnown RBP17.06■□□□□ 0.32
SCAF11-208ENST00000546534 THSD7BQ9C0I4 1608 aa17.06■□□□□ 0.32
SCAF11-208ENST00000546534 NPC1L1Q9UHC9 1359 aa17.05■□□□□ 0.32
SCAF11-208ENST00000546534 RGS19P49795 217 aa17.05■□□□□ 0.32
SCAF11-208ENST00000546534 SLC51AQ86UW1 340 aa17.05■□□□□ 0.32
SCAF11-208ENST00000546534 LARGE2Q8N3Y3 721 aa17.05■□□□□ 0.32
SCAF11-208ENST00000546534 TSKSQ9UJT2 592 aa17.05■□□□□ 0.32
SCAF11-208ENST00000546534 DCTN1Q14203 1278 aa17.04■□□□□ 0.32
SCAF11-208ENST00000546534 USP50Q70EL3 339 aaPredicted RBP17.04■□□□□ 0.32
SCAF11-208ENST00000546534 NYXQ9GZU5 481 aa17.04■□□□□ 0.32
SCAF11-208ENST00000546534 TLL2Q9Y6L7 1015 aa17.04■□□□□ 0.32
SCAF11-208ENST00000546534 AOC2O75106 756 aa17.03■□□□□ 0.32
SCAF11-208ENST00000546534 HOXA10P31260 410 aaPredicted RBP17.03■□□□□ 0.32
SCAF11-208ENST00000546534 NGEFQ8N5V2 710 aa17.03■□□□□ 0.32
SCAF11-208ENST00000546534 TCERG1O14776 1098 aaKnown RBP17.02■□□□□ 0.32
SCAF11-208ENST00000546534 GRIPAP1Q4V328 841 aa17.02■□□□□ 0.32
SCAF11-208ENST00000546534 RPGRQ92834 1020 aaKnown RBP17.02■□□□□ 0.32
SCAF11-208ENST00000546534 ERVV-1B6SEH8 477 aa17.01■□□□□ 0.31
SCAF11-208ENST00000546534 MAP2K2P36507 400 aa17.01■□□□□ 0.31
SCAF11-208ENST00000546534 CFAP53Q96M91 514 aa17.01■□□□□ 0.31
SCAF11-208ENST00000546534 MIS18AQ9NYP9 233 aa17.01■□□□□ 0.31
SCAF11-208ENST00000546534 U2AF1L5P0DN76 240 aaPredicted RBP17■□□□□ 0.31
SCAF11-208ENST00000546534 U2AF1Q01081 240 aaKnown RBP eCLIP17■□□□□ 0.31
SCAF11-208ENST00000546534 TAF7Q15545 349 aaPredicted RBP17■□□□□ 0.31
SCAF11-208ENST00000546534 NIM1KQ8IY84 436 aa17■□□□□ 0.31
SCAF11-208ENST00000546534 RBM17Q96I25 401 aaKnown RBP17■□□□□ 0.31
SCAF11-208ENST00000546534 CRAMP1Q96RY5 1269 aa17■□□□□ 0.31
SCAF11-208ENST00000546534 MAP3K15Q6ZN16 1313 aa16.99■□□□□ 0.31
SCAF11-208ENST00000546534 RIC1Q4ADV7 1423 aa16.99■□□□□ 0.31
SCAF11-208ENST00000546534 PPEF1O14829 653 aaPredicted RBP16.99■□□□□ 0.31
SCAF11-208ENST00000546534 HTATSF1O43719 755 aaKnown RBP16.99■□□□□ 0.31
SCAF11-208ENST00000546534 GPTP24298 496 aa16.99■□□□□ 0.31
SCAF11-208ENST00000546534 AOC3Q16853 763 aa16.99■□□□□ 0.31
SCAF11-208ENST00000546534 SUSD4Q5VX71 490 aa16.99■□□□□ 0.31
SCAF11-208ENST00000546534 TTLL7Q6ZT98 887 aa16.99■□□□□ 0.31
SCAF11-208ENST00000546534 SAPCD2Q86UD0 394 aa16.99■□□□□ 0.31
SCAF11-208ENST00000546534 MCOLN1Q9GZU1 580 aa16.99■□□□□ 0.31
SCAF11-208ENST00000546534 GPRC5DQ9NZD1 345 aa16.99■□□□□ 0.31
SCAF11-208ENST00000546534 NUDCQ9Y266 331 aa16.99■□□□□ 0.31
SCAF11-208ENST00000546534 UBN2Q6ZU65 1347 aa16.98■□□□□ 0.31
SCAF11-208ENST00000546534 PPIP5K2O43314 1243 aa16.98■□□□□ 0.31
SCAF11-208ENST00000546534 C3orf67Q6ZVT6 689 aa16.98■□□□□ 0.31
SCAF11-208ENST00000546534 ADARB2Q9NS39 739 aaKnown RBP16.98■□□□□ 0.31
SCAF11-208ENST00000546534 RRP7AQ9Y3A4 280 aaKnown RBP16.98■□□□□ 0.31
SCAF11-208ENST00000546534 TRPM7Q96QT4 1865 aa16.97■□□□□ 0.31
SCAF11-208ENST00000546534 CELF2O95319 508 aaKnown RBP16.97■□□□□ 0.31
SCAF11-208ENST00000546534 CFAP44Q96MT7 982 aa16.97■□□□□ 0.31
SCAF11-208ENST00000546534 GLIS2Q9BZE0 524 aaPredicted RBP16.97■□□□□ 0.31
SCAF11-208ENST00000546534 ZBTB3Q9H5J0 574 aa16.97■□□□□ 0.31
SCAF11-208ENST00000546534 IBTKQ9P2D0 1353 aaPredicted RBP16.97■□□□□ 0.31
SCAF11-208ENST00000546534 CA12O43570 354 aa16.96■□□□□ 0.31
SCAF11-208ENST00000546534 NTSR2O95665 410 aa16.96■□□□□ 0.31
SCAF11-208ENST00000546534 CXCL9Q07325 125 aa16.96■□□□□ 0.31
SCAF11-208ENST00000546534 KIF6Q6ZMV9 814 aa16.96■□□□□ 0.31
SCAF11-208ENST00000546534 FBXO3Q9UK99 471 aa16.96■□□□□ 0.31
SCAF11-208ENST00000546534 MYL6BP14649 208 aa16.95■□□□□ 0.3
SCAF11-208ENST00000546534 GMPSP49915 693 aaPredicted RBP16.95■□□□□ 0.3
SCAF11-208ENST00000546534 BRPF1P55201 1214 aaPredicted RBP16.95■□□□□ 0.3
SCAF11-208ENST00000546534 ZNF34Q8IZ26 560 aa16.95■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms